Wall clock time and date at job start Tue Mar 31 2020 21:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46960 * 300.00315 * 3 2 1 6 6 H 1.48505 * 109.46722 * 60.00003 * 3 2 1 7 7 C 1.37881 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00022 * 179.97438 * 10 9 7 12 12 O 1.21893 * 119.99909 * 0.02562 * 11 10 9 13 13 N 1.33591 * 120.00156 * 180.02562 * 11 10 9 14 14 C 1.33141 * 120.00060 * 180.02562 * 13 11 10 15 15 N 1.34249 * 125.18633 * 179.97438 * 14 13 11 16 16 H 0.97002 * 122.84562 * 0.02562 * 15 14 13 17 17 N 1.37955 * 114.31582 * 179.74198 * 15 14 13 18 18 C 1.28869 * 114.95666 * 0.49263 * 17 15 14 19 19 C 1.47976 * 125.04300 * 179.79615 * 18 17 15 20 20 C 1.39525 * 120.12966 * 359.70008 * 19 18 17 21 21 C 1.37959 * 119.89042 * 180.02562 * 20 19 18 22 22 C 1.38346 * 120.15058 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.26329 * 0.04430 * 22 21 20 24 24 Cl 1.73606 * 119.94585 * 179.97438 * 23 22 21 25 25 C 1.38123 * 120.11155 * 359.95997 * 23 22 21 26 26 S 1.70834 * 125.18653 * 359.97438 * 14 13 11 27 27 H 0.97004 * 119.99669 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47028 * 60.00209 * 9 7 2 29 29 H 1.08994 * 109.47183 * 300.00524 * 9 7 2 30 30 H 0.97000 * 119.99638 * 0.02562 * 10 9 7 31 31 H 1.08009 * 120.05508 * 359.74067 * 20 19 18 32 32 H 1.08000 * 119.92931 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.87092 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.07771 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5551 -5.1061 -0.0006 13 7 2.6216 -5.8989 -0.0021 14 6 2.1777 -7.1541 -0.0023 15 7 2.9542 -8.2492 -0.0034 16 1 3.9233 -8.2070 -0.0038 17 7 2.2573 -9.4398 0.0023 18 6 0.9743 -9.3188 -0.0023 19 6 0.0147 -10.4452 -0.0022 20 6 0.4791 -11.7609 -0.0030 21 6 -0.4200 -12.8073 -0.0034 22 6 -1.7802 -12.5548 -0.0024 23 6 -2.2479 -11.2518 -0.0019 24 17 -3.9565 -10.9443 -0.0013 25 6 -1.3574 -10.1959 -0.0016 26 16 0.5332 -7.6167 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 3.1565 -3.4355 -0.0021 31 1 1.5407 -11.9599 -0.0081 32 1 -0.0612 -13.8260 -0.0045 33 1 -2.4800 -13.3773 -0.0023 34 1 -1.7229 -9.1796 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488643789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:27 Heat of formation + Delta-G solvation = 68.309344 kcal Electronic energy + Delta-G solvation = -22286.632655 eV Core-core repulsion = 18566.366399 eV Total energy + Delta-G solvation = -3720.266256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57041 -39.74070 -39.11784 -36.88268 -34.97707 -34.02279 -32.70979 -32.27740 -31.39525 -30.16077 -27.44575 -25.66720 -24.05213 -23.30370 -22.68072 -20.83671 -20.67009 -18.96844 -17.70228 -17.43365 -17.10486 -16.17066 -16.04638 -16.00192 -15.50164 -15.25072 -14.64656 -14.59443 -14.56518 -14.15565 -13.95629 -13.19239 -12.67961 -12.43331 -12.27627 -12.05962 -12.00889 -11.98099 -11.41983 -11.35220 -11.16366 -10.91554 -10.82119 -10.28786 -10.16354 -10.12917 -9.38035 -9.37287 -9.14101 -9.07658 -8.77682 -8.38496 -7.68244 -6.16738 -4.23161 0.05142 0.67666 0.71896 1.04415 1.36151 1.60610 1.65977 2.00781 3.15845 3.24752 3.31630 3.35389 3.64896 4.07049 4.11335 4.29653 4.36210 4.52264 4.55470 4.67487 4.85444 5.12064 5.19759 5.27957 5.60503 5.65470 5.76394 5.81433 6.16024 6.53291 6.74756 7.23988 7.34993 7.49825 7.51297 7.68113 7.95932 8.62712 8.78958 9.21066 9.44116 10.93618 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.002241 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.644991 B =12489.682879 C =13917.182903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.259 3.741 10 N -0.682 5.682 11 C 0.654 3.346 12 O -0.594 6.594 13 N -0.605 5.605 14 C 0.351 3.649 15 N -0.489 5.489 16 H 0.451 0.549 17 N -0.217 5.217 18 C 0.030 3.970 19 C -0.005 4.005 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.093 4.093 23 C -0.033 4.033 24 Cl -0.058 7.058 25 C -0.080 4.080 26 S 0.234 5.766 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.398 0.602 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -29.139 -0.015 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.138 3.862 10 N -0.329 5.329 11 C 0.350 3.650 12 O -0.478 6.478 13 N -0.363 5.363 14 C -0.032 4.032 15 N -0.219 5.219 16 H 0.299 0.701 17 N -0.034 5.034 18 C -0.265 4.265 19 C -0.009 4.009 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.060 4.060 24 Cl -0.029 7.029 25 C -0.101 4.101 26 S 0.466 5.534 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.232 0.768 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.725 -28.520 -0.011 28.572 hybrid contribution 1.452 1.021 0.001 1.775 sum -0.274 -27.499 -0.010 27.500 Atomic orbital electron populations 1.69987 1.06092 1.27240 1.48974 1.24946 0.94942 0.99458 0.94668 0.86327 0.79864 0.82795 0.77742 1.19591 1.20764 1.20770 1.21252 0.93454 0.90221 1.53131 0.91681 1.19167 0.87919 0.81172 0.97930 1.45484 1.11712 1.03440 1.72268 1.16895 0.84370 0.84483 0.79222 1.90710 1.17158 1.82258 1.57652 1.68246 1.36674 0.94736 1.36620 1.24724 0.94585 0.91974 0.91872 1.45879 1.10641 0.97974 1.67409 0.70150 1.74620 1.06533 1.04615 1.17598 1.26863 0.93529 1.03607 1.02486 1.17366 0.89800 0.89905 1.03821 1.21424 1.01135 0.90713 0.96175 1.21103 0.92037 0.99719 0.99767 1.21273 0.96415 0.95134 0.98413 1.20707 0.85641 0.94356 1.05303 1.98407 1.11486 1.96163 1.96853 1.21123 0.90971 0.99704 0.98286 1.87058 1.01715 0.89278 1.75338 0.92468 0.95281 0.95275 0.76832 0.84125 0.84181 0.84316 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -15.08 9.28 -34.44 -0.32 -15.39 16 8 H 0.07 1.71 7.60 -52.49 -0.40 1.32 16 9 C 0.26 7.08 5.43 -5.20 -0.03 7.05 16 10 N -0.68 -15.87 5.55 -66.67 -0.37 -16.24 16 11 C 0.65 14.68 8.47 -87.97 -0.74 13.93 16 12 O -0.59 -14.33 13.62 5.02 0.07 -14.27 16 13 N -0.61 -11.32 10.59 -18.15 -0.19 -11.51 16 14 C 0.35 5.48 8.17 -88.84 -0.73 4.75 16 15 N -0.49 -5.80 6.86 29.49 0.20 -5.59 16 16 H 0.45 4.16 8.96 -184.19 -1.65 2.51 16 17 N -0.22 -2.41 11.64 32.70 0.38 -2.03 16 18 C 0.03 0.34 7.34 -14.81 -0.11 0.23 16 19 C 0.00 -0.05 5.87 -104.97 -0.62 -0.66 16 20 C -0.07 -0.51 9.67 -39.20 -0.38 -0.89 16 21 C -0.11 -0.57 10.03 -39.64 -0.40 -0.97 16 22 C -0.09 -0.55 9.82 -39.47 -0.39 -0.94 16 23 C -0.03 -0.26 6.31 -39.55 -0.25 -0.51 16 24 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 25 C -0.08 -0.72 9.37 -39.17 -0.37 -1.08 16 26 S 0.23 3.40 18.83 -107.50 -2.02 1.37 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.40 8.40 8.42 -40.82 -0.34 8.05 16 31 H 0.14 0.85 7.80 -52.48 -0.41 0.44 16 32 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 1.33 7.27 -52.49 -0.38 0.94 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -33.07 336.17 -11.09 -44.16 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.01 Total: 3.22 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -4.42 Total: 7.19 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.76 Total: -60.90 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.02 Total: 1.37 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.07 -11.09 -44.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488643789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.467 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds