Wall clock time and date at job start Tue Mar 31 2020 21:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46960 * 300.00315 * 3 2 1 6 6 H 1.48505 * 109.46722 * 60.00003 * 3 2 1 7 7 C 1.37881 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00022 * 179.97438 * 10 9 7 12 12 O 1.21893 * 119.99909 * 0.02562 * 11 10 9 13 13 N 1.33591 * 120.00156 * 180.02562 * 11 10 9 14 14 C 1.33141 * 120.00060 * 180.02562 * 13 11 10 15 15 N 1.34249 * 125.18633 * 179.97438 * 14 13 11 16 16 H 0.97002 * 122.84562 * 0.02562 * 15 14 13 17 17 N 1.37955 * 114.31582 * 179.74198 * 15 14 13 18 18 C 1.28869 * 114.95666 * 0.49263 * 17 15 14 19 19 C 1.47976 * 125.04300 * 179.79615 * 18 17 15 20 20 C 1.39525 * 120.12966 * 359.70008 * 19 18 17 21 21 C 1.37959 * 119.89042 * 180.02562 * 20 19 18 22 22 C 1.38346 * 120.15058 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.26329 * 0.04430 * 22 21 20 24 24 Cl 1.73606 * 119.94585 * 179.97438 * 23 22 21 25 25 C 1.38123 * 120.11155 * 359.95997 * 23 22 21 26 26 S 1.70834 * 125.18653 * 359.97438 * 14 13 11 27 27 H 0.97004 * 119.99669 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47028 * 60.00209 * 9 7 2 29 29 H 1.08994 * 109.47183 * 300.00524 * 9 7 2 30 30 H 0.97000 * 119.99638 * 0.02562 * 10 9 7 31 31 H 1.08009 * 120.05508 * 359.74067 * 20 19 18 32 32 H 1.08000 * 119.92931 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.87092 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.07771 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5551 -5.1061 -0.0006 13 7 2.6216 -5.8989 -0.0021 14 6 2.1777 -7.1541 -0.0023 15 7 2.9542 -8.2492 -0.0034 16 1 3.9233 -8.2070 -0.0038 17 7 2.2573 -9.4398 0.0023 18 6 0.9743 -9.3188 -0.0023 19 6 0.0147 -10.4452 -0.0022 20 6 0.4791 -11.7609 -0.0030 21 6 -0.4200 -12.8073 -0.0034 22 6 -1.7802 -12.5548 -0.0024 23 6 -2.2479 -11.2518 -0.0019 24 17 -3.9565 -10.9443 -0.0013 25 6 -1.3574 -10.1959 -0.0016 26 16 0.5332 -7.6167 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 3.1565 -3.4355 -0.0021 31 1 1.5407 -11.9599 -0.0081 32 1 -0.0612 -13.8260 -0.0045 33 1 -2.4800 -13.3773 -0.0023 34 1 -1.7229 -9.1796 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488643789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:26 Heat of formation + Delta-G solvation = 44.715535 kcal Electronic energy + Delta-G solvation = -22287.655760 eV Core-core repulsion = 18566.366399 eV Total energy + Delta-G solvation = -3721.289360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69462 -40.96353 -40.15524 -37.52409 -36.60247 -35.59899 -34.41732 -33.66373 -32.01388 -31.05437 -29.41377 -26.95450 -25.10714 -24.52304 -23.85630 -22.28347 -21.69695 -20.47272 -19.12228 -18.42620 -18.11863 -17.92855 -17.28429 -17.06318 -16.78054 -16.55122 -16.11702 -16.10981 -15.31589 -15.05872 -14.70593 -14.69429 -14.16517 -14.11287 -13.82530 -13.18593 -12.99234 -12.84572 -12.76335 -12.64030 -12.39657 -12.35511 -12.14466 -11.96235 -11.47963 -11.45573 -11.26230 -10.84740 -10.64055 -10.22367 -9.98570 -9.78197 -9.23884 -8.31175 -6.47537 -0.78594 -0.49708 -0.22720 0.10205 0.20353 0.76975 0.87003 1.10470 1.42438 1.43859 1.57687 2.22183 2.41033 2.43009 2.56664 2.97752 3.03745 3.57585 3.76693 4.01332 4.07291 4.13292 4.29221 4.52457 4.74184 5.02927 5.06748 5.20282 5.20420 5.26659 5.37354 5.51043 5.54297 5.65092 5.65828 5.81276 6.14373 6.61750 6.83790 7.21763 7.55354 8.81401 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.002241 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.644991 B =12489.682879 C =13917.182903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.281 3.719 10 N -0.686 5.686 11 C 0.653 3.347 12 O -0.627 6.627 13 N -0.623 5.623 14 C 0.350 3.650 15 N -0.466 5.466 16 H 0.464 0.536 17 N -0.209 5.209 18 C 0.057 3.943 19 C -0.029 4.029 20 C -0.066 4.066 21 C -0.096 4.096 22 C -0.081 4.081 23 C -0.045 4.045 24 Cl -0.066 7.066 25 C -0.092 4.092 26 S 0.208 5.792 27 H 0.270 0.730 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.408 0.592 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.165 0.835 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -31.865 -0.017 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.098 0.902 9 C 0.158 3.842 10 N -0.336 5.336 11 C 0.349 3.651 12 O -0.512 6.512 13 N -0.384 5.384 14 C -0.031 4.031 15 N -0.196 5.196 16 H 0.315 0.685 17 N -0.025 5.025 18 C -0.238 4.238 19 C -0.033 4.033 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.072 4.072 24 Cl -0.037 7.037 25 C -0.113 4.113 26 S 0.442 5.558 27 H 0.079 0.921 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.243 0.757 31 H 0.172 0.828 32 H 0.196 0.804 33 H 0.182 0.818 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.176 -31.354 -0.013 31.354 hybrid contribution 0.847 1.422 0.001 1.655 sum 0.671 -29.932 -0.012 29.939 Atomic orbital electron populations 1.70135 1.08138 1.28631 1.49722 1.26048 0.95855 1.03772 0.93704 0.85077 0.78899 0.77148 0.77879 1.17999 1.20153 1.20164 1.21595 0.94249 0.90475 1.53263 0.90176 1.18585 0.88042 0.83043 0.94517 1.45118 1.11426 1.03223 1.73792 1.17136 0.84433 0.84970 0.78532 1.90702 1.18543 1.83263 1.58726 1.68202 1.35336 0.94909 1.39962 1.24863 0.95412 0.92032 0.90763 1.46026 1.11356 0.97136 1.65072 0.68483 1.74699 1.06100 1.03224 1.18460 1.27037 0.93701 1.02066 1.01014 1.17407 0.89233 0.90117 1.06554 1.21660 1.02293 0.89854 0.94935 1.21517 0.91221 1.00953 0.97644 1.21661 0.97431 0.94775 0.96141 1.20837 0.85120 0.95050 1.06150 1.98406 1.12087 1.96303 1.96937 1.21093 0.91387 0.99678 0.99168 1.87244 1.01496 0.92246 1.74769 0.92079 0.98910 0.98902 0.75662 0.82757 0.80403 0.81772 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.01 0.34 5.46 84.66 0.46 0.81 16 3 Si 0.99 43.50 29.54 68.60 2.03 45.53 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.56 -31.78 9.28 25.60 0.24 -31.55 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.27 5.43 85.63 0.46 16.73 16 10 N -0.69 -33.51 5.55 -482.97 -2.68 -36.19 16 11 C 0.65 30.70 8.47 179.42 1.52 32.22 16 12 O -0.63 -32.08 13.62 -4.97 -0.07 -32.15 16 13 N -0.62 -23.85 10.59 -330.12 -3.50 -27.35 16 14 C 0.35 10.98 8.17 179.73 1.47 12.45 16 15 N -0.47 -10.43 6.86 -60.62 -0.42 -10.85 16 16 H 0.46 7.74 8.96 -214.67 -1.92 5.81 16 17 N -0.21 -4.23 11.64 -50.46 -0.59 -4.81 16 18 C 0.06 1.21 7.34 87.71 0.64 1.86 16 19 C -0.03 -0.48 5.87 -20.09 -0.12 -0.60 16 20 C -0.07 -0.70 9.67 22.51 0.22 -0.49 16 21 C -0.10 -0.59 10.03 22.23 0.22 -0.37 16 22 C -0.08 -0.68 9.82 22.34 0.22 -0.46 16 23 C -0.04 -0.64 6.31 22.29 0.14 -0.50 16 24 Cl -0.07 -1.04 28.95 -2.72 -0.08 -1.12 16 25 C -0.09 -1.60 9.37 22.54 0.21 -1.39 16 26 S 0.21 6.20 18.83 -56.49 -1.06 5.13 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.41 17.77 8.42 -92.71 -0.78 16.99 16 31 H 0.15 1.24 7.80 -2.91 -0.02 1.22 16 32 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 33 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.13 2.54 7.27 -2.91 -0.02 2.52 16 Total: -1.00 -75.10 336.17 -1.90 -77.00 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -1.51 Total: 12.53 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 5.69 Total: 28.71 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -6.90 Total: -135.63 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.07 Total: -32.15 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.06 Total: 5.13 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -75.10 -1.90 -77.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488643789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.715 kcal (2) G-P(sol) polarization free energy of solvation -75.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds