Wall clock time and date at job start Tue Mar 31 2020 20:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46659 * 227.51428 * 3 2 1 5 5 C 1.36909 * 119.99500 * 263.87851 * 4 3 2 6 6 H 1.08001 * 119.99449 * 206.85900 * 5 4 3 7 7 C 1.39017 * 120.00108 * 26.85798 * 5 4 3 8 8 N 1.31384 * 120.00160 * 11.03472 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 191.03348 * 7 5 4 10 10 H 1.48503 * 109.47295 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47137 * 119.99900 * 9 7 5 12 12 H 1.48504 * 109.47354 * 239.99844 * 9 7 5 13 13 C 1.34772 * 120.00144 * 83.88152 * 4 3 2 14 14 O 1.21629 * 120.00101 * 4.51259 * 13 4 3 15 15 C 1.47426 * 119.99723 * 184.50989 * 13 4 3 16 16 C 1.40043 * 120.59679 * 37.54165 * 15 13 4 17 17 C 1.38397 * 118.33310 * 180.02562 * 16 15 13 18 18 Br 1.89097 * 120.27939 * 179.97438 * 17 16 15 19 19 C 1.38457 * 119.44420 * 0.02562 * 17 16 15 20 20 C 1.50699 * 119.40569 * 179.97438 * 19 17 16 21 21 N 1.31895 * 121.18148 * 359.72402 * 19 17 16 22 22 C 1.32209 * 121.81836 * 0.56672 * 21 19 17 23 23 O 1.35443 * 119.79255 * 179.71243 * 22 21 19 24 24 H 4.40636 * 5.51434 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46987 * 107.51558 * 3 2 1 26 26 H 1.08998 * 109.47156 * 347.51385 * 3 2 1 27 27 H 0.97007 * 119.99789 * 180.02562 * 8 7 5 28 28 H 1.07997 * 120.83525 * 0.04322 * 16 15 13 29 29 H 1.09007 * 109.46929 * 90.00020 * 20 19 17 30 30 H 1.08999 * 109.47038 * 210.00140 * 20 19 17 31 31 H 1.09001 * 109.47238 * 330.00271 * 20 19 17 32 32 H 0.96700 * 114.00177 * 269.72640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9338 1.0186 5 6 3.4806 2.2108 0.6671 6 1 4.2124 2.7511 1.2493 7 6 2.8908 2.8117 -0.4390 8 7 1.8531 2.2498 -1.0167 9 14 3.5735 4.4183 -1.1040 10 1 4.7354 4.8407 -0.2812 11 1 4.0064 4.2273 -2.5116 12 1 2.5211 5.4646 -1.0474 13 6 3.2413 0.5352 2.3015 14 8 3.0121 -0.6214 2.6003 15 6 3.6368 1.5010 3.3428 16 6 3.1818 2.8247 3.2970 17 6 3.5825 3.6920 4.2983 18 35 3.0015 5.4915 4.2900 19 6 4.4132 3.2312 5.3057 20 6 4.8494 4.1765 6.3953 21 7 4.8255 1.9787 5.3314 22 6 4.4771 1.1108 4.3968 23 8 4.9292 -0.1644 4.4604 24 1 -1.0501 0.0000 -0.0003 25 1 3.0092 0.3101 -0.9800 26 1 3.0098 -1.0025 0.2222 27 1 1.4418 2.6690 -1.7887 28 1 2.5344 3.1603 2.5004 29 1 4.1323 4.1411 7.2156 30 1 5.8333 3.8815 6.7598 31 1 4.8979 5.1906 5.9987 32 1 5.7672 -0.3080 3.9998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:16 Heat of formation + Delta-G solvation = 17.552668 kcal Electronic energy + Delta-G solvation = -21232.871941 eV Core-core repulsion = 17820.931403 eV Total energy + Delta-G solvation = -3411.940539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95912 -40.15307 -38.41528 -36.98836 -34.53673 -33.78822 -33.69254 -32.99403 -30.87186 -29.12410 -28.08114 -26.58317 -24.25715 -23.85375 -21.46043 -20.08013 -19.61887 -18.72787 -18.16087 -17.91902 -16.88680 -16.38914 -16.24053 -15.80895 -15.55291 -15.26266 -14.83032 -14.38022 -14.14986 -13.93832 -13.79857 -13.47523 -13.22714 -13.14296 -12.85121 -12.71904 -12.64815 -12.21219 -12.11411 -11.32208 -11.26363 -11.22107 -10.94428 -10.73234 -10.56546 -10.30558 -9.88591 -9.70273 -8.29696 -6.05170 -0.50776 -0.10856 0.42098 1.39003 1.47394 1.57751 1.79015 2.01610 2.29145 2.30032 2.43030 2.60192 2.99434 3.06519 3.45725 3.64353 3.78788 3.94176 4.08783 4.32567 4.60868 4.66916 4.73421 4.74732 4.87973 4.97133 5.03467 5.31343 5.36129 5.39320 5.69484 6.29895 6.46341 6.67214 7.01753 7.15665 7.38664 7.81082 8.66051 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.006483 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.945206 B = 4317.975247 C = 5917.763617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.141 4.141 3 C 0.246 3.754 4 N -0.432 5.432 5 C -0.358 4.358 6 H 0.102 0.898 7 C 0.012 3.988 8 N -0.867 5.867 9 Si 0.972 3.028 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.497 3.503 14 O -0.612 6.612 15 C -0.185 4.185 16 C 0.019 3.981 17 C -0.177 4.177 18 Br -0.008 7.008 19 C 0.192 3.808 20 C -0.110 4.110 21 N -0.509 5.509 22 C 0.360 3.640 23 O -0.473 6.473 24 H 0.232 0.768 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.274 0.726 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 9.473 7.844 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.143 4.143 3 C 0.124 3.876 4 N -0.148 5.148 5 C -0.485 4.485 6 H 0.120 0.880 7 C -0.194 4.194 8 N -0.502 5.502 9 Si 0.795 3.205 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.499 6.499 15 C -0.193 4.193 16 C -0.008 4.008 17 C -0.259 4.259 18 Br 0.077 6.923 19 C 0.051 3.949 20 C -0.167 4.167 21 N -0.230 5.230 22 C 0.180 3.820 23 O -0.282 6.282 24 H 0.248 0.752 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.367 9.146 8.715 13.367 hybrid contribution -0.218 0.250 -1.784 1.814 sum 4.149 9.396 6.931 12.391 Atomic orbital electron populations 1.25048 0.96309 1.04190 1.01975 1.23342 0.94993 0.97042 0.98923 1.17962 0.84693 0.91929 0.93045 1.43673 1.54677 1.11985 1.04484 1.19829 1.23512 0.90343 1.14817 0.88046 1.26069 0.94475 1.01723 0.97116 1.70105 1.18696 1.40227 1.21196 0.85165 0.78863 0.77912 0.78529 1.18016 1.20236 1.20259 1.18026 0.83344 0.87386 0.82646 1.90662 1.57403 1.20004 1.81863 1.20992 1.04985 0.95291 0.98003 1.22010 0.93446 0.90267 0.95071 1.22755 1.07335 0.94721 1.01086 1.96638 1.88713 1.08218 1.98769 1.21686 0.89295 0.90021 0.93914 1.21093 1.04000 0.96663 0.94947 1.67275 1.26652 1.02721 1.26380 1.19250 0.90801 0.84555 0.87372 1.84698 1.44713 1.20515 1.78286 0.75170 0.88419 0.91381 0.91604 0.82794 0.87765 0.88580 0.88217 0.72198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.28 19.25 74.32 1.43 -9.85 16 2 C -0.14 -6.86 11.19 31.13 0.35 -6.51 16 3 C 0.25 11.76 5.10 84.57 0.43 12.19 16 4 N -0.43 -21.04 2.58 -649.15 -1.68 -22.72 16 5 C -0.36 -16.70 6.91 84.09 0.58 -16.12 16 6 H 0.10 4.57 6.11 -2.91 -0.02 4.56 16 7 C 0.01 0.55 5.06 84.95 0.43 0.98 16 8 N -0.87 -42.03 9.24 21.68 0.20 -41.83 16 9 Si 0.97 36.56 29.57 68.60 2.03 38.58 16 10 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 12 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 13 C 0.50 24.38 7.10 86.66 0.62 24.99 16 14 O -0.61 -33.20 15.72 11.78 0.19 -33.01 16 15 C -0.19 -7.89 5.25 -19.91 -0.10 -8.00 16 16 C 0.02 0.75 7.58 22.75 0.17 0.92 16 17 C -0.18 -5.63 6.23 22.36 0.14 -5.49 16 18 Br -0.01 -0.20 31.77 -20.37 -0.65 -0.85 16 19 C 0.19 5.66 6.78 42.60 0.29 5.95 16 20 C -0.11 -2.15 9.70 71.24 0.69 -1.46 16 21 N -0.51 -17.40 10.28 -295.94 -3.04 -20.44 16 22 C 0.36 13.92 7.74 85.15 0.66 14.58 16 23 O -0.47 -17.51 12.28 -71.49 -0.88 -18.39 16 24 H 0.23 7.99 7.80 -4.41 -0.03 7.95 16 25 H 0.10 4.66 6.80 -2.39 -0.02 4.64 16 26 H 0.07 3.17 7.55 -2.39 -0.02 3.16 16 27 H 0.27 12.69 8.31 -92.70 -0.77 11.92 16 28 H 0.15 6.46 6.41 -2.91 -0.02 6.44 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 1.68 6.60 -2.39 -0.02 1.66 16 32 H 0.42 11.19 9.06 -74.06 -0.67 10.52 16 Total: -1.00 -62.56 305.58 2.37 -60.19 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.52 Total: 26.29 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.68 Total: 12.17 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -4.52 Total: -84.99 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.69 Total: -51.40 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.65 Total: -0.85 kcal Total: -62.56 2.37 -60.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.744 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds