Wall clock time and date at job start Tue Mar 31 2020 20:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47063 * 239.96701 * 3 2 1 5 5 C 1.36905 * 119.99943 * 89.25896 * 4 3 2 6 6 H 1.08005 * 119.99826 * 163.64871 * 5 4 3 7 7 C 1.39020 * 120.00284 * 343.65043 * 5 4 3 8 8 N 1.31382 * 119.99843 * 330.00909 * 7 5 4 9 9 Si 1.86796 * 120.00205 * 150.00682 * 7 5 4 10 10 H 1.48497 * 109.47114 * 60.00326 * 9 7 5 11 11 H 1.48500 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47245 * 300.00020 * 9 7 5 13 13 C 1.34780 * 120.00176 * 269.26301 * 4 3 2 14 14 O 1.21618 * 120.00041 * 184.14771 * 13 4 3 15 15 C 1.47512 * 120.00026 * 4.14998 * 13 4 3 16 16 C 1.39622 * 120.49858 * 299.92962 * 15 13 4 17 17 N 1.31643 * 120.63006 * 179.97438 * 16 15 13 18 18 C 1.32415 * 121.81890 * 359.97438 * 17 16 15 19 19 O 1.35526 * 119.52129 * 180.02562 * 18 17 16 20 20 C 1.42894 * 116.99910 * 0.02562 * 19 18 17 21 21 C 1.39220 * 120.95283 * 0.02562 * 18 17 16 22 22 Br 1.89097 * 120.36984 * 180.02562 * 21 18 17 23 23 C 1.38043 * 119.25393 * 359.74107 * 21 18 17 24 24 H 4.40644 * 5.51331 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.47481 * 359.96750 * 3 2 1 26 26 H 1.08996 * 109.46907 * 119.97015 * 3 2 1 27 27 H 0.96999 * 120.00247 * 179.97438 * 8 7 5 28 28 H 1.07997 * 119.68498 * 359.97438 * 16 15 13 29 29 H 1.08997 * 109.47518 * 300.00035 * 20 19 18 30 30 H 1.09005 * 109.47292 * 60.00526 * 20 19 18 31 31 H 1.09005 * 109.47051 * 179.97438 * 20 19 18 32 32 H 1.08002 * 120.83182 * 180.27785 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6922 1.1958 5 6 3.3480 -0.0085 2.3523 6 1 3.9449 0.4227 3.1423 7 6 2.7971 -1.2752 2.5097 8 7 1.6660 -1.5782 1.9140 9 14 3.6650 -2.5463 3.5681 10 1 3.7882 -2.0336 4.9564 11 1 2.8784 -3.8058 3.5741 12 1 5.0180 -2.8097 3.0158 13 6 3.3722 2.0182 1.1574 14 8 3.8484 2.5788 2.1259 15 6 3.0553 2.7896 -0.0594 16 6 3.6652 2.4766 -1.2757 17 7 3.3840 3.1629 -2.3633 18 6 2.5209 4.1671 -2.3514 19 8 2.2657 4.8419 -3.4987 20 6 2.9610 4.4139 -4.6714 21 6 1.8719 4.5396 -1.1774 22 35 0.6419 5.9759 -1.1794 23 6 2.1321 3.8450 -0.0132 24 1 -1.0501 0.0000 -0.0003 25 1 3.0098 -1.0268 0.0006 26 1 3.0091 0.5142 -0.8902 27 1 1.2817 -2.4620 2.0235 28 1 4.3745 1.6636 -1.3248 29 1 4.0351 4.5053 -4.5107 30 1 2.7123 3.3737 -4.8820 31 1 2.6654 5.0359 -5.5164 32 1 1.6396 4.1095 0.9109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491626208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:01 Heat of formation + Delta-G solvation = 30.917387 kcal Electronic energy + Delta-G solvation = -20884.029829 eV Core-core repulsion = 17472.668828 eV Total energy + Delta-G solvation = -3411.361001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02898 -40.48144 -38.75822 -37.15415 -34.43826 -34.11008 -33.12928 -32.51295 -30.66350 -28.63546 -28.08530 -26.93283 -24.74597 -24.43669 -21.40499 -19.79389 -19.64309 -18.72177 -18.56171 -17.87781 -17.20111 -16.86169 -16.23464 -15.83422 -15.69611 -15.31437 -15.16487 -14.71715 -14.50624 -14.20120 -14.06396 -13.70103 -13.60268 -12.84381 -12.79637 -12.49851 -12.43181 -12.21424 -12.12894 -11.47931 -11.29014 -11.14257 -11.02244 -10.78695 -10.65815 -10.40034 -9.94572 -9.53980 -8.36097 -5.92507 -0.39388 -0.14985 0.38280 1.36098 1.46813 1.55571 1.76691 1.86199 2.06147 2.32250 2.39538 2.42203 2.96431 3.00838 3.08858 3.60424 3.64733 3.85825 3.93261 4.06463 4.34679 4.47567 4.48444 4.54276 4.76115 4.76787 4.84798 4.98910 5.38037 5.46729 5.94024 5.99375 6.35820 6.42105 7.05653 7.18670 7.30883 7.87034 8.56979 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.003861 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.509087 B = 7250.004213 C = 7531.822376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.153 4.153 3 C 0.228 3.772 4 N -0.426 5.426 5 C -0.365 4.365 6 H 0.082 0.918 7 C 0.016 3.984 8 N -0.846 5.846 9 Si 0.978 3.022 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.264 1.264 13 C 0.481 3.519 14 O -0.621 6.621 15 C -0.186 4.186 16 C 0.179 3.821 17 N -0.521 5.521 18 C 0.349 3.651 19 O -0.297 6.297 20 C 0.031 3.969 21 C -0.171 4.171 22 Br -0.007 7.007 23 C 0.018 3.982 24 H 0.227 0.773 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.276 0.724 28 H 0.192 0.808 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 8.541 -13.999 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.155 4.155 3 C 0.106 3.894 4 N -0.141 5.141 5 C -0.491 4.491 6 H 0.100 0.900 7 C -0.191 4.191 8 N -0.480 5.480 9 Si 0.802 3.198 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.188 1.188 13 C 0.271 3.729 14 O -0.509 6.509 15 C -0.193 4.193 16 C 0.022 3.978 17 N -0.245 5.245 18 C 0.168 3.832 19 O -0.203 6.203 20 C -0.063 4.063 21 C -0.253 4.253 22 Br 0.077 6.923 23 C -0.010 4.010 24 H 0.244 0.756 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.209 0.791 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.090 9.159 -14.431 17.219 hybrid contribution -0.016 -0.991 1.629 1.907 sum -2.106 8.168 -12.802 15.331 Atomic orbital electron populations 1.24991 0.96249 1.02525 1.02076 1.23189 0.94846 0.98799 0.98619 1.18487 0.85065 0.98626 0.87197 1.43828 1.54257 1.05369 1.10678 1.19494 1.33053 0.99210 0.97359 0.90047 1.25978 0.94426 0.99639 0.99096 1.70284 1.13208 1.21882 1.42578 0.85240 0.79028 0.77159 0.78412 1.20390 1.19917 1.18850 1.18004 0.85509 0.81861 0.87549 1.90609 1.51096 1.69953 1.39253 1.20800 1.02479 1.00063 0.95968 1.22998 0.94570 0.95388 0.84867 1.67527 1.17624 1.08435 1.30957 1.19618 0.88922 0.88102 0.86561 1.86294 1.64183 1.54014 1.15814 1.23250 0.97299 1.02134 0.83659 1.21562 1.06309 1.03195 0.94218 1.96665 1.55874 1.40616 1.99114 1.21347 0.92228 0.90269 0.97134 0.75619 0.89110 0.88235 0.91401 0.79127 0.91807 0.91860 0.85243 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.62 19.06 74.32 1.42 -8.21 16 2 C -0.15 -6.63 11.04 31.12 0.34 -6.29 16 3 C 0.23 9.56 4.97 84.57 0.42 9.98 16 4 N -0.43 -20.87 2.58 -649.07 -1.67 -22.54 16 5 C -0.36 -19.61 9.28 84.09 0.78 -18.83 16 6 H 0.08 4.75 7.41 -2.91 -0.02 4.73 16 7 C 0.02 0.78 4.66 84.95 0.40 1.18 16 8 N -0.85 -42.04 9.52 21.68 0.21 -41.83 16 9 Si 0.98 39.66 29.65 68.60 2.03 41.69 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 C 0.48 23.30 7.10 86.69 0.62 23.91 16 14 O -0.62 -35.12 16.74 -4.09 -0.07 -35.19 16 15 C -0.19 -7.18 4.97 -20.00 -0.10 -7.27 16 16 C 0.18 5.69 8.83 85.06 0.75 6.44 16 17 N -0.52 -15.32 9.18 -307.67 -2.82 -18.14 16 18 C 0.35 10.27 7.49 84.84 0.64 10.91 16 19 O -0.30 -7.37 9.80 -88.29 -0.87 -8.24 16 20 C 0.03 0.52 10.37 113.37 1.18 1.70 16 21 C -0.17 -5.31 6.25 22.46 0.14 -5.17 16 22 Br -0.01 -0.18 33.18 -20.37 -0.68 -0.86 16 23 C 0.02 0.64 9.69 22.73 0.22 0.86 16 24 H 0.23 7.27 7.80 -4.41 -0.03 7.23 16 25 H 0.09 3.88 7.05 -2.39 -0.02 3.86 16 26 H 0.10 3.44 4.39 -2.39 -0.01 3.43 16 27 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 28 H 0.19 5.16 7.27 -2.91 -0.02 5.14 16 29 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 31 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.15 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -65.15 310.30 4.09 -61.06 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.16 Total: 14.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.80 Total: 9.19 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -4.29 Total: -82.51 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.93 Total: -43.43 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.68 Total: -0.86 kcal Total: -65.15 4.09 -61.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491626208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.972 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds