Wall clock time and date at job start Tue Mar 31 2020 20:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47324 * 312.23944 * 3 2 1 5 5 C 1.36931 * 120.00096 * 270.95859 * 4 3 2 6 6 H 1.08000 * 120.00233 * 140.65833 * 5 4 3 7 7 C 1.38817 * 119.99857 * 320.64963 * 5 4 3 8 8 N 1.31611 * 120.00044 * 343.87921 * 7 5 4 9 9 Si 1.86800 * 119.99710 * 163.87545 * 7 5 4 10 10 H 1.48500 * 109.47255 * 60.00329 * 9 7 5 11 11 H 1.48500 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47341 * 300.00151 * 9 7 5 13 13 C 1.46494 * 119.99820 * 90.95135 * 4 3 2 14 14 C 1.50705 * 109.47084 * 82.78440 * 13 4 3 15 15 C 1.38268 * 119.98816 * 262.23426 * 14 13 4 16 16 C 1.38194 * 120.00691 * 180.27509 * 15 14 13 17 17 C 1.38350 * 119.99181 * 359.46513 * 16 15 14 18 18 Br 1.89094 * 120.01152 * 180.30023 * 17 16 15 19 19 C 1.38309 * 119.97865 * 0.53301 * 17 16 15 20 20 C 1.38208 * 119.98980 * 82.24951 * 14 13 4 21 21 N 1.48006 * 119.99691 * 359.97438 * 20 14 13 22 22 O 1.21801 * 120.00411 * 187.86404 * 21 20 14 23 23 O 1.21803 * 119.99703 * 7.86098 * 21 20 14 24 24 H 4.40649 * 5.51386 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46542 * 192.24322 * 3 2 1 26 26 H 1.08996 * 109.47360 * 72.24479 * 3 2 1 27 27 H 0.96996 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47551 * 322.78521 * 13 4 3 29 29 H 1.09002 * 109.47752 * 202.78373 * 13 4 3 30 30 H 1.07995 * 119.99550 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.00395 * 179.72600 * 16 15 14 32 32 H 1.07996 * 120.00600 * 179.76895 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9276 1.0226 5 6 3.3442 -0.4881 2.3024 6 1 3.0827 -1.1185 3.1395 7 6 3.8927 0.7677 2.5240 8 7 4.4994 1.4030 1.5440 9 14 3.7694 1.5559 4.2131 10 1 4.4418 0.6891 5.2141 11 1 4.4294 2.8859 4.1881 12 1 2.3398 1.7189 4.5802 13 6 3.3995 -2.3261 0.6759 14 6 4.7687 -2.4397 0.0566 15 6 4.9044 -2.4741 -1.3189 16 6 6.1594 -2.5840 -1.8871 17 6 7.2809 -2.6484 -1.0795 18 35 8.9990 -2.7902 -1.8565 19 6 7.1447 -2.6139 0.2964 20 6 5.8884 -2.5097 0.8639 21 7 5.7425 -2.4726 2.3363 22 8 6.7301 -2.3897 3.0443 23 8 4.6347 -2.5249 2.8400 24 1 -1.0499 0.0000 0.0003 25 1 3.0088 1.0051 0.2179 26 1 3.0095 -0.3125 -0.9787 27 1 4.8824 2.2807 1.6987 28 1 2.6494 -2.6725 -0.0351 29 1 3.3563 -2.9383 1.5767 30 1 4.0292 -2.4200 -1.9493 31 1 6.2650 -2.6153 -2.9614 32 1 8.0196 -2.6679 0.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491801426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:45 Heat of formation + Delta-G solvation = 114.548007 kcal Electronic energy + Delta-G solvation = -21476.330561 eV Core-core repulsion = 18068.596056 eV Total energy + Delta-G solvation = -3407.734505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.39994 -39.13247 -36.45197 -35.47573 -33.01065 -32.21737 -31.58831 -31.14631 -29.49130 -26.81121 -26.16053 -25.21082 -22.54264 -22.02457 -21.01556 -18.30279 -17.85232 -17.73780 -16.69446 -16.54174 -16.03372 -15.38322 -14.91974 -14.42507 -14.17573 -13.63617 -13.56763 -13.17733 -12.83778 -12.16517 -11.91560 -11.78184 -11.36311 -11.17506 -10.93215 -10.78945 -10.72509 -10.51051 -10.38135 -10.22518 -10.00411 -9.72149 -9.41450 -9.29174 -9.23389 -8.69180 -8.57664 -6.92330 -6.02917 -3.59537 0.46142 1.03240 1.43993 1.97135 2.29345 3.36239 3.39343 3.40932 3.49098 3.69250 3.74328 4.40780 4.66518 4.82317 4.92889 5.12001 5.15607 5.30736 5.45120 5.51988 5.62375 5.85048 5.90076 6.12312 6.38755 6.41745 6.49757 6.57488 6.88018 7.28714 7.30863 7.75853 8.26079 8.53419 8.59167 8.95683 9.50206 10.05043 10.98277 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.004621 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.097110 B = 6058.268439 C = 6863.658256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.149 4.149 3 C 0.226 3.774 4 N -0.555 5.555 5 C -0.242 4.242 6 H 0.086 0.914 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.905 3.095 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.144 3.856 14 C -0.002 4.002 15 C -0.121 4.121 16 C -0.047 4.047 17 C -0.116 4.116 18 Br -0.044 7.044 19 C -0.031 4.031 20 C -0.016 4.016 21 N 0.035 4.965 22 O -0.222 6.222 23 O -0.084 6.084 24 H 0.201 0.799 25 H 0.125 0.875 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -8.812 -9.832 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.152 4.152 3 C 0.102 3.898 4 N -0.270 5.270 5 C -0.371 4.371 6 H 0.104 0.896 7 C -0.191 4.191 8 N -0.531 5.531 9 Si 0.733 3.267 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.204 1.204 13 C 0.018 3.982 14 C -0.009 4.009 15 C -0.141 4.141 16 C -0.067 4.067 17 C -0.197 4.197 18 Br 0.041 6.959 19 C -0.051 4.051 20 C -0.100 4.100 21 N 0.552 4.448 22 O -0.419 6.419 23 O -0.316 6.316 24 H 0.218 0.782 25 H 0.142 0.858 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.771 -8.681 -10.747 14.972 hybrid contribution -0.426 0.827 1.198 1.516 sum 5.346 -7.855 -9.549 13.471 Atomic orbital electron populations 1.24612 0.95674 1.05042 1.04401 1.25283 0.96169 0.96851 0.96865 1.18354 0.80744 0.99898 0.90848 1.43910 1.70738 1.04542 1.07853 1.19446 1.34657 0.99939 0.83080 0.89631 1.25391 0.96161 0.99606 0.97909 1.69812 1.36106 1.15115 1.32074 0.86292 0.78224 0.78361 0.83827 1.19724 1.21576 1.20431 1.20928 0.87133 0.90286 0.99892 1.21365 0.98822 0.87453 0.93245 1.21048 0.97416 1.02207 0.93438 1.21348 0.91168 0.93974 1.00178 1.21301 0.92014 1.12561 0.93800 1.96685 1.19423 1.97368 1.82409 1.20752 0.96712 0.93901 0.93782 1.20651 0.95230 1.13274 0.80888 1.43202 1.00282 0.98640 1.02648 1.94455 1.30243 1.57056 1.60141 1.94467 1.11865 1.48569 1.76711 0.78167 0.85801 0.93055 0.92981 0.92856 0.87772 0.83802 0.84223 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.15 -3.11 13.68 -37.12 -0.51 -3.62 16 3 C 0.23 4.96 5.78 -6.83 -0.04 4.92 16 4 N -0.55 -12.56 2.37 -177.95 -0.42 -12.98 16 5 C -0.24 -6.15 7.29 -15.06 -0.11 -6.26 16 6 H 0.09 2.23 6.61 -52.49 -0.35 1.89 16 7 C 0.01 0.27 5.08 -17.43 -0.09 0.18 16 8 N -0.89 -24.19 11.25 55.49 0.62 -23.56 16 9 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.14 2.74 5.33 -5.19 -0.03 2.71 16 14 C 0.00 -0.04 5.44 -104.62 -0.57 -0.61 16 15 C -0.12 -1.73 9.65 -39.59 -0.38 -2.12 16 16 C -0.05 -0.61 9.79 -39.56 -0.39 -1.00 16 17 C -0.12 -1.67 6.22 -39.51 -0.25 -1.91 16 18 Br -0.04 -0.53 33.70 -68.01 -2.29 -2.83 16 19 C -0.03 -0.51 9.30 -39.55 -0.37 -0.88 16 20 C -0.02 -0.30 6.82 -79.96 -0.55 -0.85 16 21 N 0.03 0.76 4.45 33.96 0.15 0.91 16 22 O -0.22 -5.02 18.47 -29.46 -0.54 -5.57 16 23 O -0.08 -1.90 11.56 -29.46 -0.34 -2.24 16 24 H 0.20 2.89 7.80 -54.10 -0.42 2.47 16 25 H 0.13 3.11 5.42 -51.93 -0.28 2.82 16 26 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 29 H 0.10 2.04 5.42 -51.93 -0.28 1.76 16 30 H 0.14 1.71 8.05 -52.49 -0.42 1.28 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.15 2.41 7.63 -52.49 -0.40 2.01 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -28.62 309.70 -8.43 -37.05 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -2.55 Total: 1.93 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.70 Total: -14.04 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.35 Total: -35.63 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.88 Total: -7.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.62 -8.43 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491801426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.598 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds