Wall clock time and date at job start Tue Mar 31 2020 20:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47324 * 312.23944 * 3 2 1 5 5 C 1.36931 * 120.00096 * 270.95859 * 4 3 2 6 6 H 1.08000 * 120.00233 * 140.65833 * 5 4 3 7 7 C 1.38817 * 119.99857 * 320.64963 * 5 4 3 8 8 N 1.31611 * 120.00044 * 343.87921 * 7 5 4 9 9 Si 1.86800 * 119.99710 * 163.87545 * 7 5 4 10 10 H 1.48500 * 109.47255 * 60.00329 * 9 7 5 11 11 H 1.48500 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47341 * 300.00151 * 9 7 5 13 13 C 1.46494 * 119.99820 * 90.95135 * 4 3 2 14 14 C 1.50705 * 109.47084 * 82.78440 * 13 4 3 15 15 C 1.38268 * 119.98816 * 262.23426 * 14 13 4 16 16 C 1.38194 * 120.00691 * 180.27509 * 15 14 13 17 17 C 1.38350 * 119.99181 * 359.46513 * 16 15 14 18 18 Br 1.89094 * 120.01152 * 180.30023 * 17 16 15 19 19 C 1.38309 * 119.97865 * 0.53301 * 17 16 15 20 20 C 1.38208 * 119.98980 * 82.24951 * 14 13 4 21 21 N 1.48006 * 119.99691 * 359.97438 * 20 14 13 22 22 O 1.21801 * 120.00411 * 187.86404 * 21 20 14 23 23 O 1.21803 * 119.99703 * 7.86098 * 21 20 14 24 24 H 4.40649 * 5.51386 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46542 * 192.24322 * 3 2 1 26 26 H 1.08996 * 109.47360 * 72.24479 * 3 2 1 27 27 H 0.96996 * 120.00144 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47551 * 322.78521 * 13 4 3 29 29 H 1.09002 * 109.47752 * 202.78373 * 13 4 3 30 30 H 1.07995 * 119.99550 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.00395 * 179.72600 * 16 15 14 32 32 H 1.07996 * 120.00600 * 179.76895 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9276 1.0226 5 6 3.3442 -0.4881 2.3024 6 1 3.0827 -1.1185 3.1395 7 6 3.8927 0.7677 2.5240 8 7 4.4994 1.4030 1.5440 9 14 3.7694 1.5559 4.2131 10 1 4.4418 0.6891 5.2141 11 1 4.4294 2.8859 4.1881 12 1 2.3398 1.7189 4.5802 13 6 3.3995 -2.3261 0.6759 14 6 4.7687 -2.4397 0.0566 15 6 4.9044 -2.4741 -1.3189 16 6 6.1594 -2.5840 -1.8871 17 6 7.2809 -2.6484 -1.0795 18 35 8.9990 -2.7902 -1.8565 19 6 7.1447 -2.6139 0.2964 20 6 5.8884 -2.5097 0.8639 21 7 5.7425 -2.4726 2.3363 22 8 6.7301 -2.3897 3.0443 23 8 4.6347 -2.5249 2.8400 24 1 -1.0499 0.0000 0.0003 25 1 3.0088 1.0051 0.2179 26 1 3.0095 -0.3125 -0.9787 27 1 4.8824 2.2807 1.6987 28 1 2.6494 -2.6725 -0.0351 29 1 3.3563 -2.9383 1.5767 30 1 4.0292 -2.4200 -1.9493 31 1 6.2650 -2.6153 -2.9614 32 1 8.0196 -2.6679 0.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491801426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:44 Heat of formation + Delta-G solvation = 100.724751 kcal Electronic energy + Delta-G solvation = -21476.929983 eV Core-core repulsion = 18068.596056 eV Total energy + Delta-G solvation = -3408.333926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00542 -40.48050 -38.07742 -37.16583 -34.40852 -33.89646 -32.93747 -32.60229 -30.83830 -28.35661 -27.84285 -26.76589 -23.97335 -23.57491 -22.49875 -19.81572 -19.53933 -19.31305 -18.32523 -18.16340 -17.31751 -16.76239 -16.66869 -15.82709 -15.68174 -15.39806 -15.05587 -14.45644 -14.20043 -13.60176 -13.47472 -13.32084 -12.98215 -12.77750 -12.73071 -12.49526 -12.20314 -12.18634 -11.96427 -11.76229 -11.46652 -11.31310 -10.97399 -10.90071 -10.52585 -10.44633 -9.90574 -8.72130 -7.93836 -5.53546 -1.00166 -0.21563 0.25131 0.46048 0.82410 1.42324 1.44899 1.49328 2.04832 2.22100 2.27488 2.50631 3.22112 3.42175 3.59056 3.72409 3.78965 3.91800 3.98206 4.07790 4.40980 4.48210 4.72712 4.80291 4.87619 4.96231 5.13166 5.28730 5.43080 5.54379 5.67135 5.80510 6.42887 6.85437 7.02014 7.10033 7.69967 8.20747 9.03440 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.004621 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.097110 B = 6058.268439 C = 6863.658256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.203 4.203 3 C 0.232 3.768 4 N -0.570 5.570 5 C -0.231 4.231 6 H 0.070 0.930 7 C -0.033 4.033 8 N -0.913 5.913 9 Si 0.939 3.061 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.274 1.274 13 C 0.146 3.854 14 C -0.016 4.016 15 C -0.108 4.108 16 C -0.028 4.028 17 C -0.110 4.110 18 Br -0.015 7.015 19 C -0.042 4.042 20 C -0.040 4.040 21 N 0.035 4.965 22 O -0.251 6.251 23 O -0.106 6.106 24 H 0.241 0.759 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.251 0.749 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -9.882 -12.877 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.205 4.205 3 C 0.107 3.893 4 N -0.287 5.287 5 C -0.362 4.362 6 H 0.088 0.912 7 C -0.230 4.230 8 N -0.558 5.558 9 Si 0.768 3.232 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.200 1.200 13 C 0.021 3.979 14 C -0.021 4.021 15 C -0.128 4.128 16 C -0.048 4.048 17 C -0.191 4.191 18 Br 0.070 6.930 19 C -0.063 4.063 20 C -0.125 4.125 21 N 0.547 4.453 22 O -0.444 6.444 23 O -0.335 6.335 24 H 0.257 0.743 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.196 0.804 31 H 0.201 0.799 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.306 -9.784 -13.777 17.712 hybrid contribution -0.234 0.955 1.927 2.163 sum 5.072 -8.830 -11.850 15.625 Atomic orbital electron populations 1.25496 0.96525 1.02335 1.01862 1.25311 0.96665 0.99296 0.99255 1.18072 0.81708 0.98153 0.91329 1.43870 1.72053 1.05559 1.07247 1.19341 1.33091 0.99488 0.84285 0.91214 1.25763 0.97265 1.00528 0.99432 1.69918 1.38167 1.14963 1.32738 0.85753 0.78052 0.77420 0.81963 1.20791 1.21938 1.20006 1.20835 0.88703 0.88088 1.00298 1.21375 0.97390 0.88640 0.94711 1.21471 0.99422 1.00004 0.91929 1.21874 0.89861 0.90853 1.02180 1.21631 0.94116 1.10391 0.92963 1.96738 1.17589 1.97171 1.81461 1.20890 0.95807 0.94490 0.95141 1.20922 0.96987 1.15706 0.78847 1.43649 0.99795 0.97810 1.04082 1.94419 1.30370 1.58122 1.61465 1.94451 1.12009 1.49277 1.77799 0.74259 0.89234 0.91191 0.93981 0.90032 0.89079 0.80377 0.79853 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.34 19.25 74.32 1.43 -6.91 16 2 C -0.20 -8.19 13.68 31.13 0.43 -7.77 16 3 C 0.23 10.08 5.78 84.57 0.49 10.57 16 4 N -0.57 -25.87 2.37 -716.91 -1.70 -27.57 16 5 C -0.23 -12.10 7.29 84.04 0.61 -11.48 16 6 H 0.07 3.80 6.61 -2.91 -0.02 3.78 16 7 C -0.03 -1.78 5.08 84.86 0.43 -1.35 16 8 N -0.91 -51.27 11.25 21.65 0.24 -51.02 16 9 Si 0.94 45.97 29.58 68.60 2.03 48.00 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.15 5.45 5.33 85.64 0.46 5.91 16 14 C -0.02 -0.54 5.44 -19.86 -0.11 -0.64 16 15 C -0.11 -2.69 9.65 22.27 0.21 -2.47 16 16 C -0.03 -0.60 9.79 22.29 0.22 -0.39 16 17 C -0.11 -2.84 6.22 22.31 0.14 -2.70 16 18 Br -0.01 -0.31 33.70 -20.37 -0.69 -1.00 16 19 C -0.04 -1.38 9.30 22.29 0.21 -1.17 16 20 C -0.04 -1.53 6.82 36.37 0.25 -1.28 16 21 N 0.03 1.58 4.45 -46.48 -0.21 1.37 16 22 O -0.25 -11.88 18.47 18.88 0.35 -11.53 16 23 O -0.11 -4.98 11.56 18.88 0.22 -4.76 16 24 H 0.24 5.83 7.80 -4.42 -0.03 5.80 16 25 H 0.09 4.59 5.42 -2.39 -0.01 4.58 16 26 H 0.07 2.64 8.04 -2.39 -0.02 2.62 16 27 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.08 2.52 8.01 -2.39 -0.02 2.50 16 29 H 0.09 3.62 5.42 -2.39 -0.01 3.61 16 30 H 0.18 3.23 8.05 -2.91 -0.02 3.21 16 31 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.15 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -65.17 309.70 6.18 -59.00 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.16 Total: 7.21 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.76 Total: -19.69 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.66 Total: -77.22 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.57 Total: -16.29 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Total: -65.17 6.18 -59.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491801426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.721 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds