Wall clock time and date at job start Tue Mar 31 2020 20:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47171 * 41.17503 * 3 2 1 5 5 C 1.36944 * 120.00088 * 276.44697 * 4 3 2 6 6 H 1.07994 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.38815 * 119.99572 * 359.95075 * 5 4 3 8 8 N 1.31611 * 120.00086 * 27.77003 * 7 5 4 9 9 Si 1.86801 * 119.99866 * 207.77201 * 7 5 4 10 10 H 1.48504 * 109.47052 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47192 * 119.99847 * 9 7 5 12 12 H 1.48499 * 109.47266 * 240.00514 * 9 7 5 13 13 C 1.46496 * 120.00196 * 96.45166 * 4 3 2 14 14 C 1.50700 * 109.47189 * 269.99745 * 13 4 3 15 15 C 1.38238 * 120.00277 * 259.99984 * 14 13 4 16 16 C 1.38219 * 120.00625 * 180.02562 * 15 14 13 17 17 C 1.38255 * 120.02218 * 359.95090 * 16 15 14 18 18 C 1.38196 * 120.01024 * 0.02781 * 17 16 15 19 19 N 1.48010 * 120.00329 * 179.97438 * 18 17 16 20 20 O 1.21792 * 120.00322 * 359.97438 * 19 18 17 21 21 O 1.21806 * 119.99423 * 179.72016 * 19 18 17 22 22 C 1.38306 * 120.00570 * 80.25477 * 14 13 4 23 23 Br 1.89103 * 120.00914 * 359.97075 * 22 14 13 24 24 H 4.40634 * 5.51419 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46959 * 281.16866 * 3 2 1 26 26 H 1.08999 * 109.46778 * 161.17899 * 3 2 1 27 27 H 0.97002 * 120.00003 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47447 * 149.99590 * 13 4 3 29 29 H 1.09001 * 109.46918 * 30.00233 * 13 4 3 30 30 H 1.08002 * 119.99967 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.99052 * 179.97438 * 16 15 14 32 32 H 1.07999 * 119.99601 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0387 -0.9093 5 6 3.2382 -2.3339 -0.4765 6 1 3.5981 -3.1001 -1.1470 7 6 2.8806 -2.6615 0.8242 8 7 1.9758 -1.9462 1.4580 9 14 3.6839 -4.1177 1.6749 10 1 4.6603 -4.7524 0.7534 11 1 4.3869 -3.6510 2.8969 12 1 2.6427 -5.1078 2.0504 13 6 3.5133 -0.6927 -2.2816 14 6 2.3121 -0.8238 -3.1822 15 6 2.1552 -1.9521 -3.9652 16 6 1.0538 -2.0722 -4.7916 17 6 0.1082 -1.0645 -4.8348 18 6 0.2641 0.0636 -4.0520 19 7 -0.7481 1.1426 -4.0987 20 8 -1.7181 1.0364 -4.8274 21 8 -0.6131 2.1346 -3.4049 22 6 1.3694 0.1871 -3.2293 23 35 1.5869 1.7337 -2.1631 24 1 -1.0497 -0.0002 -0.0004 25 1 3.0095 -0.1982 1.0082 26 1 3.0089 0.9735 -0.3315 27 1 1.7257 -2.1755 2.3667 28 1 4.2988 -1.3670 -2.6230 29 1 3.8784 0.3340 -2.3098 30 1 2.8932 -2.7399 -3.9313 31 1 0.9316 -2.9537 -5.4036 32 1 -0.7525 -1.1590 -5.4803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491805213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:24 Heat of formation + Delta-G solvation = 128.360425 kcal Electronic energy + Delta-G solvation = -21521.916642 eV Core-core repulsion = 18114.781088 eV Total energy + Delta-G solvation = -3407.135554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23159 -40.63032 -37.94863 -37.64692 -34.29193 -33.82848 -33.18920 -32.22128 -30.69760 -28.08310 -27.56110 -27.46131 -24.14936 -23.45268 -22.28608 -19.89341 -19.72383 -19.38967 -18.63217 -18.15643 -17.36598 -17.04878 -16.72311 -15.74661 -15.58917 -15.24027 -15.00679 -14.32717 -14.09083 -13.80979 -13.43586 -13.20306 -13.05482 -12.82175 -12.68770 -12.57225 -12.31057 -12.23783 -12.17098 -11.89424 -11.72529 -10.80084 -10.69242 -10.49418 -10.27137 -9.98193 -9.71174 -9.12642 -7.84388 -5.16417 -1.22693 -0.13788 0.21940 0.33530 0.59627 1.48637 1.54781 1.61729 2.20034 2.43788 2.59796 2.71972 3.20647 3.33236 3.63814 3.83070 3.89087 3.95398 4.01364 4.16861 4.43733 4.52470 4.73201 4.88686 4.92186 4.99622 5.16206 5.24796 5.44086 5.50549 5.62284 5.73889 6.19726 6.56580 7.05728 7.46480 7.79170 8.19054 9.15097 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.006037 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.189080 B = 4636.616226 C = 5246.089081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.079 4.079 3 C 0.264 3.736 4 N -0.584 5.584 5 C -0.264 4.264 6 H 0.095 0.905 7 C -0.043 4.043 8 N -0.907 5.907 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.297 1.297 12 H -0.308 1.308 13 C 0.170 3.830 14 C -0.081 4.081 15 C -0.050 4.050 16 C -0.093 4.093 17 C -0.064 4.064 18 C -0.051 4.051 19 N 0.030 4.970 20 O -0.178 6.178 21 O -0.169 6.169 22 C -0.046 4.046 23 Br 0.005 6.995 24 H 0.194 0.806 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.245 0.755 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.172 0.828 31 H 0.193 0.807 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 1.875 -13.244 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.346 4.346 2 C -0.082 4.082 3 C 0.138 3.862 4 N -0.302 5.302 5 C -0.393 4.393 6 H 0.113 0.887 7 C -0.239 4.239 8 N -0.552 5.552 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.224 1.224 12 H -0.236 1.236 13 C 0.043 3.957 14 C -0.088 4.088 15 C -0.070 4.070 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.137 4.137 19 N 0.544 4.456 20 O -0.390 6.390 21 O -0.383 6.383 22 C -0.129 4.129 23 Br 0.092 6.908 24 H 0.211 0.789 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.210 0.790 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.022 1.954 -12.624 13.126 hybrid contribution -1.005 -0.648 0.860 1.473 sum 2.017 1.306 -11.763 12.006 Atomic orbital electron populations 1.24397 0.95888 1.07384 1.06906 1.24088 0.95404 0.94107 0.94631 1.18298 0.82688 0.90050 0.95118 1.44633 1.73358 1.05377 1.06854 1.19619 1.37475 0.86594 0.95638 0.88720 1.25432 0.98465 1.00983 0.99022 1.70391 1.29262 1.43102 1.12425 0.85433 0.78248 0.79204 0.78794 1.18479 1.22413 1.23589 1.20400 0.91622 1.01862 0.81782 1.21406 0.99084 0.92258 0.96032 1.21939 0.98159 0.95769 0.91087 1.21764 0.91730 0.98926 0.98763 1.21359 1.01255 0.89715 0.96080 1.21069 0.92271 0.92362 1.08017 1.43790 1.01258 1.01969 0.98607 1.94434 1.21443 1.85655 1.37467 1.94687 1.82575 1.21204 1.39790 1.21764 0.96196 0.97424 0.97473 1.96755 1.96401 1.31498 1.66110 0.78926 0.91415 0.91648 0.94506 0.88294 0.90642 0.81015 0.78979 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -15.61 18.66 74.32 1.39 -14.23 16 2 C -0.08 -3.79 8.09 31.13 0.25 -3.54 16 3 C 0.26 11.91 4.81 84.58 0.41 12.31 16 4 N -0.58 -24.88 2.49 -716.92 -1.79 -26.67 16 5 C -0.26 -12.38 9.65 84.03 0.81 -11.57 16 6 H 0.10 4.10 7.97 -2.91 -0.02 4.08 16 7 C -0.04 -2.15 4.97 84.86 0.42 -1.73 16 8 N -0.91 -49.60 8.92 21.65 0.19 -49.41 16 9 Si 0.95 41.40 29.63 68.60 2.03 43.43 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.31 -13.97 7.11 99.48 0.71 -13.26 16 13 C 0.17 5.53 5.38 85.63 0.46 5.99 16 14 C -0.08 -2.54 5.47 -19.85 -0.11 -2.65 16 15 C -0.05 -1.18 9.67 22.27 0.22 -0.97 16 16 C -0.09 -1.82 10.05 22.27 0.22 -1.59 16 17 C -0.06 -1.57 9.55 22.26 0.21 -1.36 16 18 C -0.05 -1.69 6.85 36.39 0.25 -1.44 16 19 N 0.03 1.09 4.45 -46.43 -0.21 0.88 16 20 O -0.18 -6.17 18.45 18.90 0.35 -5.82 16 21 O -0.17 -6.58 15.52 18.88 0.29 -6.28 16 22 C -0.05 -1.58 5.85 22.31 0.13 -1.45 16 23 Br 0.00 0.17 22.09 -20.37 -0.45 -0.28 16 24 H 0.19 8.44 7.80 -4.43 -0.03 8.41 16 25 H 0.07 3.47 6.25 -2.39 -0.01 3.45 16 26 H 0.07 2.63 5.93 -2.39 -0.01 2.61 16 27 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 28 H 0.10 2.72 7.90 -2.38 -0.02 2.70 16 29 H 0.08 2.31 6.84 -2.39 -0.02 2.29 16 30 H 0.17 3.11 8.04 -2.91 -0.02 3.08 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.17 3.40 7.61 -2.91 -0.02 3.37 16 Total: -1.00 -63.57 296.60 6.24 -57.32 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.16 Total: 9.05 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.66 Total: -22.21 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.80 Total: -75.20 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.64 Total: -12.10 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 35 Polarization: 0.17 SS G_CDS: -0.45 Total: -0.28 kcal Total: -63.57 6.24 -57.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491805213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.684 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds