Wall clock time and date at job start Tue Mar 31 2020 20:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99676 * 2 1 4 4 C 1.50695 * 109.47217 * 274.99936 * 3 2 1 5 5 O 1.21291 * 119.99914 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99832 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99992 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00051 * 359.97438 * 7 6 4 9 9 C 1.38955 * 119.99920 * 180.02562 * 7 6 4 10 10 N 1.31406 * 120.00018 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99589 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47514 * 89.99930 * 11 9 7 13 13 H 1.48507 * 109.46497 * 209.99662 * 11 9 7 14 14 H 1.48500 * 109.47390 * 329.99324 * 11 9 7 15 15 S 1.65603 * 119.99768 * 180.02562 * 2 1 3 16 16 O 1.42102 * 106.39816 * 156.45890 * 15 2 1 17 17 O 1.42091 * 106.40305 * 23.53846 * 15 2 1 18 18 C 1.76201 * 107.21735 * 269.99574 * 15 2 1 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 2 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 2 24 24 H 1.09004 * 109.47066 * 269.99762 * 1 2 3 25 25 H 1.09003 * 109.47210 * 29.99619 * 1 2 3 26 26 H 1.09002 * 109.47365 * 149.99627 * 1 2 3 27 27 H 1.08997 * 109.47339 * 35.00422 * 3 2 1 28 28 H 1.09004 * 109.46503 * 154.99824 * 3 2 1 29 29 H 0.97000 * 120.00374 * 359.97438 * 6 4 3 30 30 H 0.97000 * 119.99694 * 180.02562 * 10 9 7 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 8 1.8773 1.1235 -2.3337 6 7 2.9857 2.9238 -1.6607 7 6 3.1162 3.3762 -2.9483 8 1 2.7030 2.8044 -3.7660 9 6 3.7810 4.5699 -3.2012 10 7 4.2842 5.2654 -2.2063 11 14 3.9594 5.1859 -4.9557 12 1 2.7994 6.0474 -5.2983 13 1 5.2133 5.9719 -5.0792 14 1 4.0075 4.0281 -5.8844 15 16 2.2930 -1.4342 -0.0006 16 8 3.5759 -1.1565 -0.5450 17 8 1.4113 -2.4062 -0.5454 18 6 2.5538 -1.8866 1.6822 19 6 1.7237 -2.6287 2.4159 20 6 2.1387 -2.8549 3.7175 21 6 3.3069 -2.2947 4.0400 22 17 4.0752 -2.4056 5.5927 23 16 3.9486 -1.4281 2.6505 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4344 29 1 3.3565 3.4376 -0.9262 30 1 4.7479 6.0988 -2.3829 31 1 0.7979 -3.0236 2.0246 32 1 1.5592 -3.4359 4.4197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522888117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:40 Heat of formation + Delta-G solvation = -68.233138 kcal Electronic energy + Delta-G solvation = -22308.772183 eV Core-core repulsion = 18549.903106 eV Total energy + Delta-G solvation = -3758.869077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -38.47673 -38.39719 -37.19782 -36.98904 -35.74515 -35.53578 -33.82635 -31.27297 -30.02115 -28.49003 -25.55523 -24.77008 -24.03466 -20.75143 -19.78758 -19.37241 -18.34868 -17.82211 -17.35743 -16.63392 -16.17438 -15.80944 -15.37375 -14.57735 -14.42768 -14.32413 -13.90129 -13.86167 -13.64161 -13.47890 -13.24353 -12.60984 -12.37639 -12.21977 -12.13675 -12.04308 -11.93727 -11.58526 -11.43133 -11.34289 -11.22369 -11.16396 -10.99982 -10.38627 -10.22617 -9.53294 -9.52388 -9.39832 -8.99695 -8.22789 -7.98660 -6.42574 -3.83104 -0.08517 0.33575 0.63591 1.24544 1.67781 1.95073 3.02400 3.18027 3.27514 3.34253 3.80819 3.84006 4.17911 4.43415 4.68145 4.85354 4.90450 4.98552 5.24871 5.29462 5.30871 5.52441 5.59043 5.68360 5.73015 5.98402 6.06485 6.28220 6.59978 7.55375 8.03597 8.58228 9.16361 9.50707 10.01123 10.74805 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.003120 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.480335 B = 8970.965127 C = 9836.726852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.970 5.970 3 C 0.111 3.889 4 C 0.424 3.576 5 O -0.584 6.584 6 N -0.557 5.557 7 C -0.299 4.299 8 H 0.104 0.896 9 C 0.024 3.976 10 N -0.900 5.900 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.269 1.269 15 S 2.716 3.284 16 O -0.934 6.934 17 O -0.945 6.945 18 C -0.788 4.788 19 C 0.008 3.992 20 C -0.148 4.148 21 C -0.123 4.123 22 Cl -0.003 7.003 23 S 0.277 5.723 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.393 0.607 30 H 0.272 0.728 31 H 0.164 0.836 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -12.504 17.520 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.809 5.809 3 C -0.018 4.018 4 C 0.208 3.792 5 O -0.469 6.469 6 N -0.194 5.194 7 C -0.429 4.429 8 H 0.122 0.878 9 C -0.178 4.178 10 N -0.541 5.541 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.193 1.193 15 S 2.799 3.201 16 O -0.924 6.924 17 O -0.935 6.935 18 C -0.987 4.987 19 C -0.027 4.027 20 C -0.181 4.181 21 C -0.269 4.269 22 Cl 0.025 6.975 23 S 0.542 5.458 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.181 0.819 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.633 -12.359 16.103 20.469 hybrid contribution -0.862 -0.028 0.920 1.261 sum -3.495 -12.387 17.022 21.340 Atomic orbital electron populations 1.21572 0.77706 1.05140 1.01062 1.56770 1.15432 1.20094 1.88577 1.21110 0.97109 0.85751 0.97856 1.20185 0.84960 0.83856 0.90218 1.90527 1.52922 1.57988 1.45450 1.41832 1.48744 1.19345 1.09448 1.19725 1.33662 1.04715 0.84752 0.87817 1.25266 0.96589 0.96307 0.99659 1.69604 1.37331 1.15753 1.31416 0.85852 0.77601 0.78845 0.81970 1.20421 1.20892 1.19348 1.01655 0.73729 0.72619 0.72061 1.93639 1.40091 1.84103 1.74547 1.93553 1.66130 1.59106 1.74713 1.36566 1.09151 1.21007 1.31987 1.19839 0.98881 0.92385 0.91560 1.20415 0.96045 1.03892 0.97706 1.26042 0.99821 1.07168 0.93881 1.98398 1.79762 1.96825 1.22470 1.84562 1.17287 1.47277 0.96630 0.93013 0.89815 0.90016 0.88246 0.88734 0.77335 0.91814 0.81891 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 10.67 59.85 0.64 1.79 16 2 N -0.97 -15.13 2.68 -123.05 -0.33 -15.46 16 3 C 0.11 1.85 5.80 -5.20 -0.03 1.82 16 4 C 0.42 9.88 7.85 -10.99 -0.09 9.80 16 5 O -0.58 -15.80 15.99 5.55 0.09 -15.72 16 6 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 10 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 11 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 S 2.72 44.10 5.79 -107.50 -0.62 43.48 16 16 O -0.93 -18.54 16.88 -57.17 -0.97 -19.50 16 17 O -0.94 -16.61 16.40 -57.17 -0.94 -17.55 16 18 C -0.79 -9.69 6.57 29.02 0.19 -9.50 16 19 C 0.01 0.08 9.84 -41.20 -0.41 -0.33 16 20 C -0.15 -1.27 10.13 -41.15 -0.42 -1.69 16 21 C -0.12 -1.18 7.10 29.08 0.21 -0.97 16 22 Cl 0.00 -0.03 29.29 -51.86 -1.52 -1.55 16 23 S 0.28 3.14 23.22 -107.50 -2.50 0.64 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 26 H 0.08 1.04 7.02 -51.93 -0.36 0.68 16 27 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 28 H 0.09 1.41 7.61 -51.93 -0.40 1.02 16 29 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.16 1.26 8.05 -52.49 -0.42 0.84 16 32 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -34.68 331.02 -8.99 -43.68 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.70 Total: 5.40 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.14 Total: -7.00 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.34 Total: -52.88 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -1.81 Total: -52.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 47.24 SS G_CDS: -3.12 Total: 44.12 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.52 Total: -1.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.68 -8.99 -43.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522888117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.557 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds