Wall clock time and date at job start Tue Mar 31 2020 20:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99676 * 2 1 4 4 C 1.50695 * 109.47217 * 274.99936 * 3 2 1 5 5 O 1.21291 * 119.99914 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99832 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99992 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00051 * 359.97438 * 7 6 4 9 9 C 1.38955 * 119.99920 * 180.02562 * 7 6 4 10 10 N 1.31406 * 120.00018 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99589 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47514 * 89.99930 * 11 9 7 13 13 H 1.48507 * 109.46497 * 209.99662 * 11 9 7 14 14 H 1.48500 * 109.47390 * 329.99324 * 11 9 7 15 15 S 1.65603 * 119.99768 * 180.02562 * 2 1 3 16 16 O 1.42102 * 106.39816 * 156.45890 * 15 2 1 17 17 O 1.42091 * 106.40305 * 23.53846 * 15 2 1 18 18 C 1.76201 * 107.21735 * 269.99574 * 15 2 1 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 2 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 2 24 24 H 1.09004 * 109.47066 * 269.99762 * 1 2 3 25 25 H 1.09003 * 109.47210 * 29.99619 * 1 2 3 26 26 H 1.09002 * 109.47365 * 149.99627 * 1 2 3 27 27 H 1.08997 * 109.47339 * 35.00422 * 3 2 1 28 28 H 1.09004 * 109.46503 * 154.99824 * 3 2 1 29 29 H 0.97000 * 120.00374 * 359.97438 * 6 4 3 30 30 H 0.97000 * 119.99694 * 180.02562 * 10 9 7 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 8 1.8773 1.1235 -2.3337 6 7 2.9857 2.9238 -1.6607 7 6 3.1162 3.3762 -2.9483 8 1 2.7030 2.8044 -3.7660 9 6 3.7810 4.5699 -3.2012 10 7 4.2842 5.2654 -2.2063 11 14 3.9594 5.1859 -4.9557 12 1 2.7994 6.0474 -5.2983 13 1 5.2133 5.9719 -5.0792 14 1 4.0075 4.0281 -5.8844 15 16 2.2930 -1.4342 -0.0006 16 8 3.5759 -1.1565 -0.5450 17 8 1.4113 -2.4062 -0.5454 18 6 2.5538 -1.8866 1.6822 19 6 1.7237 -2.6287 2.4159 20 6 2.1387 -2.8549 3.7175 21 6 3.3069 -2.2947 4.0400 22 17 4.0752 -2.4056 5.5927 23 16 3.9486 -1.4281 2.6505 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4344 29 1 3.3565 3.4376 -0.9262 30 1 4.7479 6.0988 -2.3829 31 1 0.7979 -3.0236 2.0246 32 1 1.5592 -3.4359 4.4197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522888117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:39 Heat of formation + Delta-G solvation = -94.715517 kcal Electronic energy + Delta-G solvation = -22309.920545 eV Core-core repulsion = 18549.903106 eV Total energy + Delta-G solvation = -3760.017439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23470 -39.23323 -38.44782 -37.78222 -37.10343 -36.92702 -35.79018 -33.28866 -30.84779 -29.87877 -27.12226 -25.75614 -25.46499 -21.66968 -21.45101 -20.36052 -20.03869 -19.34021 -18.63837 -17.92745 -17.47437 -17.11414 -16.60086 -16.24247 -15.89279 -15.67309 -15.23520 -15.05903 -14.85550 -14.59041 -14.02922 -13.94638 -13.90213 -13.50940 -13.48348 -13.33565 -13.04209 -12.96528 -12.93747 -12.66137 -12.53066 -12.40890 -12.20814 -12.12426 -11.89258 -11.50678 -10.90655 -10.27405 -10.01213 -9.88290 -9.81894 -8.45986 -5.94400 -1.00731 -0.74263 -0.20084 0.42892 0.92679 1.20273 1.37885 1.42339 1.54836 1.86278 2.02416 2.30943 2.62571 3.16278 3.19816 3.31384 3.71568 3.96577 4.16082 4.31125 4.35381 4.49321 4.53562 4.62947 4.74002 4.92028 5.03067 5.07213 5.39873 5.43097 5.99875 6.59434 7.12730 7.54709 8.10108 8.70911 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.003120 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.480335 B = 8970.965127 C = 9836.726852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.976 5.976 3 C 0.120 3.880 4 C 0.418 3.582 5 O -0.628 6.628 6 N -0.567 5.567 7 C -0.335 4.335 8 H 0.077 0.923 9 C -0.010 4.010 10 N -0.916 5.916 11 Si 0.990 3.010 12 H -0.268 1.268 13 H -0.270 1.270 14 H -0.277 1.277 15 S 2.722 3.278 16 O -0.984 6.984 17 O -0.969 6.969 18 C -0.801 4.801 19 C 0.027 3.973 20 C -0.140 4.140 21 C -0.115 4.115 22 Cl 0.011 6.989 23 S 0.246 5.754 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.400 0.600 30 H 0.279 0.721 31 H 0.187 0.813 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 -12.833 19.932 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.814 5.814 3 C -0.010 4.010 4 C 0.204 3.796 5 O -0.515 6.515 6 N -0.205 5.205 7 C -0.465 4.465 8 H 0.095 0.905 9 C -0.210 4.210 10 N -0.556 5.556 11 Si 0.814 3.186 12 H -0.193 1.193 13 H -0.195 1.195 14 H -0.202 1.202 15 S 2.812 3.188 16 O -0.974 6.974 17 O -0.959 6.959 18 C -1.005 5.005 19 C -0.008 4.008 20 C -0.172 4.172 21 C -0.262 4.262 22 Cl 0.040 6.960 23 S 0.511 5.489 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.162 0.838 28 H 0.130 0.870 29 H 0.234 0.766 30 H 0.088 0.912 31 H 0.204 0.796 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.456 -12.665 18.495 22.681 hybrid contribution -0.641 -0.036 0.323 0.719 sum -4.097 -12.702 18.818 23.070 Atomic orbital electron populations 1.21828 0.76080 1.04385 1.03930 1.56750 1.16522 1.19223 1.88898 1.21123 0.99254 0.87111 0.93482 1.21446 0.82783 0.82584 0.92757 1.90492 1.54218 1.58936 1.47868 1.41896 1.49536 1.20269 1.08774 1.19651 1.35560 1.05719 0.85563 0.90539 1.25994 0.95681 0.95860 1.03441 1.69652 1.37153 1.15992 1.32839 0.84975 0.78282 0.78065 0.77292 1.19332 1.19454 1.20199 1.00845 0.72528 0.72394 0.73047 1.93577 1.42208 1.84741 1.76865 1.93514 1.66336 1.59714 1.76353 1.35758 1.10905 1.23862 1.29992 1.20265 0.98827 0.90079 0.91623 1.20738 0.95653 1.03307 0.97513 1.26138 0.99848 1.06405 0.93778 1.98412 1.79647 1.96669 1.21294 1.84701 1.17682 1.48596 0.97894 0.88241 0.90883 0.90560 0.83842 0.86994 0.76600 0.91197 0.79572 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 10.67 127.77 1.36 3.32 16 2 N -0.98 -29.63 2.68 -543.22 -1.45 -31.09 16 3 C 0.12 3.89 5.80 85.63 0.50 4.39 16 4 C 0.42 19.92 7.85 87.66 0.69 20.60 16 5 O -0.63 -35.30 15.99 -3.06 -0.05 -35.35 16 6 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 7 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 10 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 11 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 15 S 2.72 88.29 5.79 -56.49 -0.33 87.96 16 16 O -0.98 -40.41 16.88 -128.00 -2.16 -42.57 16 17 O -0.97 -34.14 16.40 -128.00 -2.10 -36.24 16 18 C -0.80 -18.42 6.57 66.71 0.44 -17.98 16 19 C 0.03 0.45 9.84 21.22 0.21 0.66 16 20 C -0.14 -1.85 10.13 21.25 0.22 -1.63 16 21 C -0.12 -1.87 7.10 66.75 0.47 -1.40 16 22 Cl 0.01 0.15 29.29 -2.72 -0.08 0.08 16 23 S 0.25 5.26 23.22 -56.49 -1.31 3.95 16 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 26 H 0.08 1.89 7.02 -2.39 -0.02 1.88 16 27 H 0.14 3.40 8.11 -2.39 -0.02 3.38 16 28 H 0.11 3.28 7.61 -2.38 -0.02 3.26 16 29 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 30 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.19 2.15 8.05 -2.91 -0.02 2.13 16 32 H 0.19 1.24 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -78.10 331.02 -1.17 -79.27 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.46 Total: 18.57 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.16 Total: -10.50 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -2.79 Total: -110.52 kcal Atomic # 8 Polarization: -109.85 SS G_CDS: -4.31 Total: -114.16 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 93.55 SS G_CDS: -1.64 Total: 91.91 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.08 kcal Total: -78.10 -1.17 -79.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522888117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.442 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds