Wall clock time and date at job start Tue Mar 31 2020 21:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40087 * 126.03472 * 2 1 4 4 C 1.30837 * 108.20156 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.89792 * 179.97438 * 4 3 2 6 6 F 1.39897 * 109.46779 * 4.97898 * 5 4 3 7 7 F 1.39897 * 109.46644 * 124.97508 * 5 4 3 8 8 F 1.39899 * 109.47422 * 244.97784 * 5 4 3 9 9 C 1.39877 * 108.20539 * 359.77745 * 4 3 2 10 10 C 1.34946 * 126.03808 * 180.02562 * 2 1 3 11 11 S 1.76200 * 126.12628 * 359.94023 * 10 2 1 12 12 O 1.42096 * 106.40539 * 336.46450 * 11 10 2 13 13 O 1.42101 * 106.40490 * 203.53828 * 11 10 2 14 14 N 1.65597 * 107.21548 * 90.00380 * 11 10 2 15 15 C 1.36940 * 120.00463 * 89.99918 * 14 11 10 16 16 H 1.08004 * 119.99091 * 353.99836 * 15 14 11 17 17 C 1.38811 * 120.00247 * 173.72721 * 15 14 11 18 18 N 1.31615 * 119.99768 * 335.89574 * 17 15 14 19 19 Si 1.86800 * 119.99763 * 155.90296 * 17 15 14 20 20 H 1.48493 * 109.47544 * 59.99758 * 19 17 15 21 21 H 1.48506 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47289 * 299.99306 * 19 17 15 23 23 C 1.46504 * 119.99981 * 269.99883 * 14 11 10 24 24 C 1.47195 * 109.46959 * 266.79852 * 23 14 11 25 25 N 6.19827 * 65.28610 * 201.67897 * 2 1 3 26 26 H 1.09001 * 109.47362 * 269.98028 * 1 2 3 27 27 H 1.08993 * 109.47056 * 29.98416 * 1 2 3 28 28 H 1.09003 * 109.46757 * 149.97958 * 1 2 3 29 29 H 1.07997 * 126.03515 * 180.23345 * 9 4 3 30 30 H 0.97009 * 119.99617 * 180.02562 * 18 17 15 31 31 H 1.09000 * 109.47137 * 26.80340 * 23 14 11 32 32 H 1.09003 * 109.46745 * 146.80001 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 4.7497 1.6237 -0.0013 6 9 4.3483 2.9589 0.1132 7 9 5.5734 1.2901 1.0791 8 9 5.4552 1.4496 -1.1968 9 6 3.5437 -0.6666 0.0042 10 6 2.2590 -1.0912 -0.0005 11 16 1.7193 -2.7685 0.0002 12 8 0.4072 -2.7677 0.5457 13 8 2.7865 -3.5333 0.5439 14 7 1.5679 -3.2354 -1.5813 15 6 2.6342 -3.7916 -2.2362 16 1 3.5997 -3.8374 -1.7542 17 6 2.4729 -4.3017 -3.5171 18 7 1.2841 -4.6924 -3.9249 19 14 3.9432 -4.4339 -4.6617 20 1 4.9687 -5.3169 -4.0505 21 1 3.5088 -5.0064 -5.9613 22 1 4.5209 -3.0840 -4.8834 23 6 0.2932 -3.0533 -2.2801 24 6 -0.5080 -4.2830 -2.1675 25 7 -1.1264 -5.2323 -2.0800 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4212 -1.2962 0.0086 30 1 1.1714 -5.0492 -4.8199 31 1 -0.2515 -2.2224 -1.8317 32 1 0.4828 -2.8381 -3.3317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528315071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:15 Heat of formation + Delta-G solvation = -86.889311 kcal Electronic energy + Delta-G solvation = -27867.035160 eV Core-core repulsion = 23157.473081 eV Total energy + Delta-G solvation = -4709.562080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.045 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -50.14909 -47.66920 -47.65032 -41.27340 -37.00443 -36.54352 -35.05693 -34.62997 -33.65723 -31.98527 -30.49712 -28.36189 -27.77623 -25.14789 -24.39513 -22.10297 -21.07582 -19.04871 -18.61285 -18.53463 -18.28912 -18.13551 -17.10292 -16.56959 -16.32733 -15.54889 -15.08761 -14.97132 -14.70999 -14.50264 -14.40994 -14.07446 -14.02358 -13.80096 -13.79416 -13.71326 -13.32459 -12.81832 -12.79894 -12.55191 -12.30024 -11.97022 -11.73141 -11.57848 -11.40923 -11.28688 -11.25071 -11.14758 -10.75367 -10.67366 -10.59140 -10.36700 -9.99321 -9.80496 -8.84448 -8.72917 -6.95001 -4.27172 0.81285 1.35775 1.96351 2.16559 2.82539 2.99879 3.05670 3.07678 3.44601 3.66095 3.83531 3.94745 4.00520 4.16276 4.31614 4.37515 4.58622 4.64581 5.01544 5.11085 5.21954 5.29862 5.40280 5.45842 5.67556 5.79900 6.20447 6.23174 6.58158 6.67825 7.00237 7.20889 7.80238 8.24597 8.65380 8.74422 10.05061 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.005097 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.392949 B = 5492.301196 C = 6707.609517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.294 5.294 3 N -0.226 5.226 4 C -0.044 4.044 5 C 0.560 3.440 6 F -0.170 7.170 7 F -0.167 7.167 8 F -0.166 7.166 9 C -0.132 4.132 10 C -0.460 4.460 11 S 2.578 3.422 12 O -0.972 6.972 13 O -0.947 6.947 14 N -0.804 5.804 15 C -0.278 4.278 16 H 0.129 0.871 17 C 0.048 3.952 18 N -0.827 5.827 19 Si 0.918 3.082 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.228 3.772 24 C 0.260 3.740 25 N -0.468 5.468 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.170 0.830 30 H 0.285 0.715 31 H 0.081 0.919 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 10.800 1.414 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.078 5.078 3 N -0.054 5.054 4 C -0.209 4.209 5 C 0.503 3.497 6 F -0.151 7.151 7 F -0.149 7.149 8 F -0.147 7.147 9 C -0.163 4.163 10 C -0.659 4.659 11 S 2.667 3.333 12 O -0.961 6.961 13 O -0.935 6.935 14 N -0.632 5.632 15 C -0.421 4.421 16 H 0.146 0.854 17 C -0.164 4.164 18 N -0.466 5.466 19 Si 0.742 3.258 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.190 1.190 23 C 0.099 3.901 24 C -0.059 4.059 25 N -0.148 5.148 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.188 0.812 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.170 10.077 2.380 10.356 hybrid contribution 1.931 0.466 -1.060 2.252 sum 2.101 10.543 1.319 10.831 Atomic orbital electron populations 1.22423 0.72139 1.05593 1.05392 1.48217 1.06658 1.01547 1.51422 1.77095 1.00058 1.09826 1.18467 1.22084 0.92804 0.94889 1.11093 1.16815 0.81218 0.77530 0.74094 1.93214 1.90568 1.35605 1.95713 1.93233 1.73776 1.92310 1.55548 1.93248 1.79928 1.95193 1.46348 1.21141 0.97244 0.92021 1.05859 1.36054 0.98900 1.19405 1.11505 1.09555 0.73856 0.74408 0.75517 1.93455 1.37844 1.87063 1.77696 1.93472 1.55655 1.66873 1.77471 1.54426 1.14862 1.59397 1.34477 1.19826 0.91873 1.30914 0.99536 0.85376 1.25343 0.98342 0.95445 0.97289 1.69897 1.23669 1.33117 1.19898 0.86106 0.81110 0.79564 0.79016 1.18985 1.20462 1.18972 1.18346 0.81686 0.87791 1.02245 1.28689 0.91699 0.94537 0.91002 1.80908 1.12700 1.10311 1.10913 0.88955 0.88467 0.87579 0.81231 0.90321 0.90162 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.54 59.85 0.63 1.65 16 2 N -0.29 -4.71 4.01 -67.26 -0.27 -4.98 16 3 N -0.23 -3.78 12.35 33.67 0.42 -3.36 16 4 C -0.04 -0.72 6.51 -82.40 -0.54 -1.26 16 5 C 0.56 8.03 3.51 36.01 0.13 8.15 16 6 F -0.17 -2.40 17.14 2.25 0.04 -2.36 16 7 F -0.17 -2.31 17.30 2.25 0.04 -2.27 16 8 F -0.17 -2.33 17.30 2.25 0.04 -2.30 16 9 C -0.13 -2.25 10.48 -40.01 -0.42 -2.67 16 10 C -0.46 -8.07 7.00 -17.22 -0.12 -8.19 16 11 S 2.58 50.28 5.56 -107.50 -0.60 49.68 16 12 O -0.97 -19.19 14.80 -57.17 -0.85 -20.04 16 13 O -0.95 -21.06 16.71 -57.17 -0.96 -22.01 16 14 N -0.80 -15.99 2.88 -62.77 -0.18 -16.17 16 15 C -0.28 -5.90 9.40 -15.06 -0.14 -6.04 16 16 H 0.13 2.66 7.38 -52.48 -0.39 2.27 16 17 C 0.05 1.01 4.96 -17.43 -0.09 0.92 16 18 N -0.83 -17.86 8.90 55.49 0.49 -17.37 16 19 Si 0.92 16.58 29.62 -169.99 -5.03 11.55 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 C 0.23 4.11 5.10 -6.83 -0.03 4.08 16 24 C 0.26 5.51 13.39 -20.75 -0.28 5.23 16 25 N -0.47 -10.84 18.54 42.17 0.78 -10.05 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.23 4.72 -51.93 -0.25 0.99 16 29 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 30 H 0.29 5.91 8.31 -40.82 -0.34 5.57 16 31 H 0.08 1.12 5.72 -51.93 -0.30 0.82 16 32 H 0.13 2.22 6.34 -51.93 -0.33 1.89 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -27.93 314.13 -3.86 -31.79 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -1.66 Total: 1.27 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.86 Total: 1.87 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 1.24 Total: -51.92 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.80 Total: -42.05 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.12 Total: -6.92 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.03 Total: 11.55 kcal Atomic # 16 Polarization: 50.28 SS G_CDS: -0.60 Total: 49.68 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.93 -3.86 -31.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528315071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.098 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds