Wall clock time and date at job start Tue Mar 31 2020 21:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40087 * 126.03472 * 2 1 4 4 C 1.30837 * 108.20156 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.89792 * 179.97438 * 4 3 2 6 6 F 1.39897 * 109.46779 * 4.97898 * 5 4 3 7 7 F 1.39897 * 109.46644 * 124.97508 * 5 4 3 8 8 F 1.39899 * 109.47422 * 244.97784 * 5 4 3 9 9 C 1.39877 * 108.20539 * 359.77745 * 4 3 2 10 10 C 1.34946 * 126.03808 * 180.02562 * 2 1 3 11 11 S 1.76200 * 126.12628 * 359.94023 * 10 2 1 12 12 O 1.42096 * 106.40539 * 336.46450 * 11 10 2 13 13 O 1.42101 * 106.40490 * 203.53828 * 11 10 2 14 14 N 1.65597 * 107.21548 * 90.00380 * 11 10 2 15 15 C 1.36940 * 120.00463 * 89.99918 * 14 11 10 16 16 H 1.08004 * 119.99091 * 353.99836 * 15 14 11 17 17 C 1.38811 * 120.00247 * 173.72721 * 15 14 11 18 18 N 1.31615 * 119.99768 * 335.89574 * 17 15 14 19 19 Si 1.86800 * 119.99763 * 155.90296 * 17 15 14 20 20 H 1.48493 * 109.47544 * 59.99758 * 19 17 15 21 21 H 1.48506 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47289 * 299.99306 * 19 17 15 23 23 C 1.46504 * 119.99981 * 269.99883 * 14 11 10 24 24 C 1.47195 * 109.46959 * 266.79852 * 23 14 11 25 25 N 6.19827 * 65.28610 * 201.67897 * 2 1 3 26 26 H 1.09001 * 109.47362 * 269.98028 * 1 2 3 27 27 H 1.08993 * 109.47056 * 29.98416 * 1 2 3 28 28 H 1.09003 * 109.46757 * 149.97958 * 1 2 3 29 29 H 1.07997 * 126.03515 * 180.23345 * 9 4 3 30 30 H 0.97009 * 119.99617 * 180.02562 * 18 17 15 31 31 H 1.09000 * 109.47137 * 26.80340 * 23 14 11 32 32 H 1.09003 * 109.46745 * 146.80001 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 4.7497 1.6237 -0.0013 6 9 4.3483 2.9589 0.1132 7 9 5.5734 1.2901 1.0791 8 9 5.4552 1.4496 -1.1968 9 6 3.5437 -0.6666 0.0042 10 6 2.2590 -1.0912 -0.0005 11 16 1.7193 -2.7685 0.0002 12 8 0.4072 -2.7677 0.5457 13 8 2.7865 -3.5333 0.5439 14 7 1.5679 -3.2354 -1.5813 15 6 2.6342 -3.7916 -2.2362 16 1 3.5997 -3.8374 -1.7542 17 6 2.4729 -4.3017 -3.5171 18 7 1.2841 -4.6924 -3.9249 19 14 3.9432 -4.4339 -4.6617 20 1 4.9687 -5.3169 -4.0505 21 1 3.5088 -5.0064 -5.9613 22 1 4.5209 -3.0840 -4.8834 23 6 0.2932 -3.0533 -2.2801 24 6 -0.5080 -4.2830 -2.1675 25 7 -1.1264 -5.2323 -2.0800 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4212 -1.2962 0.0086 30 1 1.1714 -5.0492 -4.8199 31 1 -0.2515 -2.2224 -1.8317 32 1 0.4828 -2.8381 -3.3317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528315071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:12 Heat of formation + Delta-G solvation = -105.688784 kcal Electronic energy + Delta-G solvation = -27867.850367 eV Core-core repulsion = 23157.473081 eV Total energy + Delta-G solvation = -4710.377286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.045 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -51.27347 -48.78402 -48.77356 -42.63816 -38.56288 -38.30117 -36.91434 -36.27555 -34.90732 -33.41500 -31.92108 -29.53081 -29.21852 -26.32324 -25.92446 -23.61528 -22.34702 -20.58273 -20.06894 -19.67798 -19.64847 -19.42843 -18.70371 -17.93121 -17.69517 -16.84168 -16.65582 -16.49428 -16.19775 -15.61635 -15.55178 -15.47964 -15.18730 -15.13715 -14.90646 -14.89998 -14.80414 -14.14096 -13.98252 -13.88146 -13.62743 -13.50223 -13.34113 -13.22617 -13.07858 -12.95056 -12.84451 -12.66509 -12.25471 -12.19542 -12.08668 -11.88843 -11.49981 -11.18700 -10.22895 -10.15749 -8.34376 -5.88539 -0.80474 -0.06892 0.74346 0.78763 1.54762 1.58658 1.63018 1.65350 1.87055 2.32140 2.41539 2.46227 2.55235 2.73679 2.75329 3.02964 3.23167 3.30416 3.59741 3.64595 3.96121 4.07256 4.31423 4.34009 4.35578 4.61406 4.84052 4.90396 5.21078 5.37742 5.55711 5.85769 6.31044 6.81143 7.12420 7.21762 8.67935 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.005097 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.392949 B = 5492.301196 C = 6707.609517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.285 5.285 3 N -0.219 5.219 4 C -0.052 4.052 5 C 0.568 3.432 6 F -0.166 7.166 7 F -0.162 7.162 8 F -0.163 7.163 9 C -0.127 4.127 10 C -0.478 4.478 11 S 2.672 3.328 12 O -0.966 6.966 13 O -0.965 6.965 14 N -0.835 5.835 15 C -0.338 4.338 16 H 0.119 0.881 17 C 0.020 3.980 18 N -0.883 5.883 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.260 1.260 23 C 0.232 3.768 24 C 0.268 3.732 25 N -0.514 5.514 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.183 0.817 30 H 0.275 0.725 31 H 0.125 0.875 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 13.679 3.204 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.070 5.070 3 N -0.048 5.048 4 C -0.215 4.215 5 C 0.512 3.488 6 F -0.148 7.148 7 F -0.144 7.144 8 F -0.145 7.145 9 C -0.158 4.158 10 C -0.684 4.684 11 S 2.758 3.242 12 O -0.955 6.955 13 O -0.954 6.954 14 N -0.666 5.666 15 C -0.470 4.470 16 H 0.137 0.863 17 C -0.186 4.186 18 N -0.523 5.523 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.185 1.185 23 C 0.103 3.897 24 C -0.050 4.050 25 N -0.195 5.195 26 H 0.128 0.872 27 H 0.150 0.850 28 H 0.128 0.872 29 H 0.200 0.800 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.225 12.829 4.010 13.443 hybrid contribution 1.867 -0.039 -1.046 2.140 sum 2.092 12.790 2.964 13.295 Atomic orbital electron populations 1.22957 0.69733 1.07616 1.07210 1.48600 1.07899 1.00592 1.49934 1.77105 1.00281 1.09744 1.17677 1.22310 0.93414 0.94773 1.11051 1.16570 0.80645 0.77330 0.74283 1.93226 1.90552 1.35267 1.95711 1.93249 1.73515 1.92280 1.55335 1.93262 1.79756 1.95176 1.46261 1.21434 0.97426 0.92912 1.04045 1.34795 0.99893 1.18121 1.15545 1.03723 0.73207 0.73798 0.73492 1.93520 1.37483 1.87237 1.77244 1.93511 1.57162 1.67355 1.77408 1.53299 1.15934 1.65399 1.32000 1.19566 0.90619 1.37193 0.99647 0.86341 1.25626 0.99505 0.95261 0.98162 1.69949 1.24330 1.38139 1.19869 0.85399 0.78939 0.79130 0.77448 1.20116 1.21340 1.18476 1.18751 0.80436 0.87437 1.03104 1.29541 0.90909 0.94903 0.89678 1.80885 1.14377 1.11741 1.12521 0.87173 0.85033 0.87223 0.79967 0.91408 0.85807 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 87. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.20 10.54 127.77 1.35 2.54 16 2 N -0.28 -7.86 4.01 -366.70 -1.47 -9.33 16 3 N -0.22 -6.37 12.35 -47.38 -0.59 -6.96 16 4 C -0.05 -1.50 6.51 43.11 0.28 -1.22 16 5 C 0.57 14.47 3.51 71.24 0.25 14.72 16 6 F -0.17 -4.16 17.14 44.97 0.77 -3.39 16 7 F -0.16 -3.98 17.30 44.97 0.78 -3.20 16 8 F -0.16 -4.14 17.30 44.97 0.78 -3.36 16 9 C -0.13 -3.91 10.48 21.99 0.23 -3.68 16 10 C -0.48 -15.08 7.00 83.54 0.58 -14.50 16 11 S 2.67 97.26 5.56 -56.49 -0.31 96.95 16 12 O -0.97 -34.63 14.80 -128.00 -1.89 -36.53 16 13 O -0.97 -41.00 16.71 -128.00 -2.14 -43.14 16 14 N -0.83 -32.54 2.88 -352.50 -1.02 -33.56 16 15 C -0.34 -14.63 9.40 84.03 0.79 -13.84 16 16 H 0.12 5.09 7.38 -2.91 -0.02 5.07 16 17 C 0.02 0.87 4.96 84.86 0.42 1.29 16 18 N -0.88 -40.26 8.90 21.65 0.19 -40.06 16 19 Si 0.97 35.85 29.62 68.60 2.03 37.88 16 20 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.29 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 23 C 0.23 8.13 5.10 84.57 0.43 8.56 16 24 C 0.27 11.42 13.39 89.44 1.20 12.62 16 25 N -0.51 -24.25 18.54 20.01 0.37 -23.88 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 2.01 4.72 -2.39 -0.01 2.00 16 29 H 0.18 5.09 8.06 -2.91 -0.02 5.06 16 30 H 0.28 12.29 8.31 -92.70 -0.77 11.52 16 31 H 0.12 3.08 5.72 -2.39 -0.01 3.06 16 32 H 0.13 4.71 6.34 -2.39 -0.02 4.69 16 Total: -1.00 -59.84 314.13 4.26 -55.58 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.23 Total: 6.51 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.53 Total: 6.49 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -2.51 Total: -113.80 kcal Atomic # 8 Polarization: -75.63 SS G_CDS: -4.03 Total: -79.67 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 2.33 Total: -9.95 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 97.26 SS G_CDS: -0.31 Total: 96.95 kcal Total: -59.84 4.26 -55.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528315071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.106 kcal (2) G-P(sol) polarization free energy of solvation -59.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds