Wall clock time and date at job start Tue Mar 31 2020 21:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48503 * 109.46965 * 239.99798 * 3 2 1 5 5 H 1.48502 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47612 * 119.99814 * 3 2 1 7 7 C 1.37884 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99881 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99361 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.54428 * 323.84347 * 11 10 9 13 13 C 1.54631 * 110.48290 * 201.23014 * 11 10 9 14 14 C 1.54661 * 101.68336 * 216.31390 * 13 11 10 15 15 N 1.46765 * 105.38427 * 25.76320 * 14 13 11 16 16 C 1.39931 * 124.34714 * 162.85188 * 15 14 13 17 17 C 1.38901 * 120.06076 * 173.99084 * 16 15 14 18 18 C 1.38094 * 119.94434 * 180.30304 * 17 16 15 19 19 C 1.38285 * 120.08316 * 359.44276 * 18 17 16 20 20 C 1.38352 * 120.13001 * 0.55974 * 19 18 17 21 21 Br 1.89095 * 119.97496 * 179.73947 * 20 19 18 22 22 C 1.38231 * 120.04956 * 359.72247 * 20 19 18 23 23 C 1.34420 * 111.30034 * 342.59324 * 15 14 13 24 24 O 1.21286 * 124.94034 * 180.64811 * 23 15 14 25 25 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46576 * 60.00234 * 9 7 2 27 27 H 1.08995 * 109.46905 * 300.00342 * 9 7 2 28 28 H 1.00898 * 110.99934 * 56.05234 * 10 9 7 29 29 H 1.09008 * 110.96645 * 334.64166 * 13 11 10 30 30 H 1.08993 * 110.97129 * 98.37146 * 13 11 10 31 31 H 1.08997 * 110.40036 * 266.73510 * 14 13 11 32 32 H 1.09000 * 110.18235 * 144.68067 * 14 13 11 33 33 H 1.08005 * 120.02543 * 0.03239 * 17 16 15 34 34 H 1.08001 * 119.95736 * 179.70237 * 18 17 16 35 35 H 1.07998 * 119.93475 * 180.27587 * 19 18 17 36 36 H 1.07996 * 120.04035 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 1 0.5979 -4.8502 0.6023 13 6 2.4336 -6.0263 0.5269 14 6 2.0132 -7.2232 -0.3578 15 7 1.4798 -6.6288 -1.5891 16 6 1.3033 -7.3252 -2.7899 17 6 0.6757 -6.7098 -3.8654 18 6 0.4972 -7.4015 -5.0472 19 6 0.9527 -8.7018 -5.1650 20 6 1.5782 -9.3180 -4.0958 21 35 2.1928 -11.0988 -4.2592 22 6 1.7546 -8.6328 -2.9083 23 6 1.1775 -5.3309 -1.4136 24 8 0.7102 -4.6051 -2.2656 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8399 -3.5484 0.7836 29 1 3.4814 -5.7696 0.3706 30 1 2.2376 -6.2337 1.5789 31 1 1.2436 -7.8124 0.1407 32 1 2.8787 -7.8461 -0.5838 33 1 0.3238 -5.6926 -3.7760 34 1 0.0050 -6.9248 -5.8820 35 1 0.8158 -9.2390 -6.0918 36 1 2.2426 -9.1140 -2.0737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570082532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:46 Heat of formation + Delta-G solvation = 7.531038 kcal Electronic energy + Delta-G solvation = -20599.822105 eV Core-core repulsion = 17323.280091 eV Total energy + Delta-G solvation = -3276.542015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04207 -38.80172 -36.44908 -35.29739 -32.99575 -32.32865 -31.42095 -29.76682 -28.66443 -27.45091 -25.34446 -23.52195 -22.64305 -21.61176 -21.21386 -19.36584 -17.65739 -16.83068 -16.51925 -16.35836 -15.48719 -14.87371 -14.67166 -14.48064 -14.13838 -13.74847 -13.71989 -13.59060 -13.43086 -13.12562 -12.51692 -12.17408 -11.96150 -11.72132 -11.56862 -11.44392 -11.18050 -11.02390 -10.69535 -10.62885 -10.53876 -10.17342 -9.94718 -9.51996 -9.11461 -8.96776 -8.48846 -8.01708 -7.49880 -6.01862 -4.04107 0.98361 1.09783 1.37715 2.69483 2.83771 3.34146 3.38404 3.41375 3.59672 4.33175 4.38047 4.44621 4.65650 4.71981 4.88480 4.96078 5.06813 5.21123 5.27334 5.34232 5.40787 5.45562 5.50164 5.56958 5.75780 5.93880 5.98119 6.06865 6.28409 6.39241 6.90867 7.03729 7.17862 7.35810 7.72936 8.09411 8.24000 8.33787 8.49167 9.03042 9.59881 11.09296 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002418 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.486755 B =11575.832231 C =12123.042189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.191 3.809 10 N -0.668 5.668 11 C 0.058 3.942 12 H 0.080 0.920 13 C -0.134 4.134 14 C 0.100 3.900 15 N -0.567 5.567 16 C 0.188 3.812 17 C -0.145 4.145 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.062 4.062 21 Br -0.056 7.056 22 C -0.140 4.140 23 C 0.530 3.470 24 O -0.480 6.480 25 H 0.262 0.738 26 H 0.044 0.956 27 H -0.013 1.013 28 H 0.339 0.661 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -25.264 -5.042 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.065 3.935 10 N -0.301 5.301 11 C -0.057 4.057 12 H 0.098 0.902 13 C -0.172 4.172 14 C -0.022 4.022 15 N -0.292 5.292 16 C 0.091 3.909 17 C -0.165 4.165 18 C -0.102 4.102 19 C -0.147 4.147 20 C -0.142 4.142 21 Br 0.030 6.970 22 C -0.163 4.163 23 C 0.318 3.682 24 O -0.350 6.350 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.005 0.995 28 H 0.158 0.842 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.379 -25.326 -6.205 26.293 hybrid contribution -0.030 1.162 0.939 1.494 sum 3.349 -24.164 -5.267 24.957 Atomic orbital electron populations 1.69954 1.06076 1.26921 1.50517 1.24973 0.94874 0.99328 0.95289 0.86534 0.79413 0.82659 0.78614 1.20146 1.21323 1.20278 1.21077 0.93389 0.90138 1.50860 0.92036 1.19746 0.90492 0.86705 0.96604 1.60561 1.21076 0.99496 1.49013 1.22086 0.98232 0.93062 0.92272 0.90221 1.22881 1.01431 0.93116 0.99735 1.22245 0.99387 0.96789 0.83799 1.45944 1.62048 1.11428 1.09772 1.17734 0.96263 0.90959 0.85903 1.21925 0.99489 1.03148 0.91944 1.21087 0.98143 0.93441 0.97501 1.21026 1.00108 0.95686 0.97910 1.21403 1.04275 0.91754 0.96776 1.96692 1.88037 1.13887 1.98407 1.20602 1.04333 0.93575 0.97807 1.21288 0.76160 0.79738 0.91053 1.90616 1.41206 1.55485 1.47702 0.92822 0.93787 0.99484 0.84219 0.88664 0.88851 0.90218 0.89765 0.81917 0.84678 0.85156 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.70 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.01 5.24 -4.97 -0.03 4.99 16 10 N -0.67 -13.79 6.29 -108.00 -0.68 -14.47 16 11 C 0.06 0.95 3.24 -67.72 -0.22 0.73 16 12 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 13 C -0.13 -1.43 6.63 -25.00 -0.17 -1.59 16 14 C 0.10 0.99 6.52 -3.02 -0.02 0.97 16 15 N -0.57 -8.03 3.14 -112.16 -0.35 -8.39 16 16 C 0.19 2.60 6.60 -83.70 -0.55 2.05 16 17 C -0.14 -2.10 9.29 -39.39 -0.37 -2.47 16 18 C -0.08 -0.96 10.04 -39.62 -0.40 -1.36 16 19 C -0.13 -1.35 9.78 -39.52 -0.39 -1.73 16 20 C -0.06 -0.69 6.22 -39.54 -0.25 -0.93 16 21 Br -0.06 -0.52 33.70 -68.01 -2.29 -2.81 16 22 C -0.14 -1.62 9.16 -39.37 -0.36 -1.98 16 23 C 0.53 9.62 7.54 -10.86 -0.08 9.54 16 24 O -0.48 -10.69 13.74 5.55 0.08 -10.62 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.04 1.31 7.13 -51.93 -0.37 0.94 16 27 H -0.01 -0.34 8.08 -51.93 -0.42 -0.76 16 28 H 0.34 6.25 8.45 -39.29 -0.33 5.92 16 29 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.66 7.23 -51.93 -0.38 0.28 16 33 H 0.16 2.79 5.25 -52.48 -0.28 2.52 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.27 6.74 -52.49 -0.35 0.92 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -33.18 323.39 -10.09 -43.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.19 Total: 2.94 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.24 Total: -5.26 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.29 Total: -49.25 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.18 -10.09 -43.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570082532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.801 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds