Wall clock time and date at job start Tue Mar 31 2020 21:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48503 * 109.46965 * 239.99798 * 3 2 1 5 5 H 1.48502 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47612 * 119.99814 * 3 2 1 7 7 C 1.37884 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99881 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99361 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.54428 * 323.84347 * 11 10 9 13 13 C 1.54631 * 110.48290 * 201.23014 * 11 10 9 14 14 C 1.54661 * 101.68336 * 216.31390 * 13 11 10 15 15 N 1.46765 * 105.38427 * 25.76320 * 14 13 11 16 16 C 1.39931 * 124.34714 * 162.85188 * 15 14 13 17 17 C 1.38901 * 120.06076 * 173.99084 * 16 15 14 18 18 C 1.38094 * 119.94434 * 180.30304 * 17 16 15 19 19 C 1.38285 * 120.08316 * 359.44276 * 18 17 16 20 20 C 1.38352 * 120.13001 * 0.55974 * 19 18 17 21 21 Br 1.89095 * 119.97496 * 179.73947 * 20 19 18 22 22 C 1.38231 * 120.04956 * 359.72247 * 20 19 18 23 23 C 1.34420 * 111.30034 * 342.59324 * 15 14 13 24 24 O 1.21286 * 124.94034 * 180.64811 * 23 15 14 25 25 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46576 * 60.00234 * 9 7 2 27 27 H 1.08995 * 109.46905 * 300.00342 * 9 7 2 28 28 H 1.00898 * 110.99934 * 56.05234 * 10 9 7 29 29 H 1.09008 * 110.96645 * 334.64166 * 13 11 10 30 30 H 1.08993 * 110.97129 * 98.37146 * 13 11 10 31 31 H 1.08997 * 110.40036 * 266.73510 * 14 13 11 32 32 H 1.09000 * 110.18235 * 144.68067 * 14 13 11 33 33 H 1.08005 * 120.02543 * 0.03239 * 17 16 15 34 34 H 1.08001 * 119.95736 * 179.70237 * 18 17 16 35 35 H 1.07998 * 119.93475 * 180.27587 * 19 18 17 36 36 H 1.07996 * 120.04035 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5053 -4.9070 0.0012 12 1 0.5979 -4.8502 0.6023 13 6 2.4336 -6.0263 0.5269 14 6 2.0132 -7.2232 -0.3578 15 7 1.4798 -6.6288 -1.5891 16 6 1.3033 -7.3252 -2.7899 17 6 0.6757 -6.7098 -3.8654 18 6 0.4972 -7.4015 -5.0472 19 6 0.9527 -8.7018 -5.1650 20 6 1.5782 -9.3180 -4.0958 21 35 2.1928 -11.0988 -4.2592 22 6 1.7546 -8.6328 -2.9083 23 6 1.1775 -5.3309 -1.4136 24 8 0.7102 -4.6051 -2.2656 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8399 -3.5484 0.7836 29 1 3.4814 -5.7696 0.3706 30 1 2.2376 -6.2337 1.5789 31 1 1.2436 -7.8124 0.1407 32 1 2.8787 -7.8461 -0.5838 33 1 0.3238 -5.6926 -3.7760 34 1 0.0050 -6.9248 -5.8820 35 1 0.8158 -9.2390 -6.0918 36 1 2.2426 -9.1140 -2.0737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570082532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:45 Heat of formation + Delta-G solvation = -15.022338 kcal Electronic energy + Delta-G solvation = -20600.800093 eV Core-core repulsion = 17323.280091 eV Total energy + Delta-G solvation = -3277.520002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19746 -39.84401 -37.78734 -36.85886 -34.78323 -33.44177 -32.71590 -30.72169 -29.76346 -28.96186 -27.00407 -24.56829 -23.92912 -23.33509 -22.22951 -20.58983 -18.84596 -18.43063 -17.98075 -17.48593 -16.71938 -16.63999 -16.00857 -15.65295 -15.45453 -15.16312 -14.80368 -14.77975 -14.55306 -14.25342 -14.09401 -13.68846 -13.37706 -13.17819 -12.79832 -12.69262 -12.49209 -12.39075 -12.26761 -11.95629 -11.94669 -11.33819 -11.31719 -11.09505 -10.77949 -10.66648 -9.87072 -9.24778 -9.04053 -8.23073 -6.34740 0.00962 0.13063 0.51629 1.39112 1.44218 1.45963 1.51991 1.72655 2.39117 2.61235 3.10338 3.22447 3.38971 3.56010 3.79065 3.94550 4.03313 4.10555 4.17033 4.28247 4.41420 4.42218 4.59499 4.62705 4.92824 4.97170 5.00042 5.11668 5.13264 5.26174 5.34770 5.41147 5.57224 5.85619 5.94367 6.00382 6.34469 6.66334 6.85953 7.00123 7.35566 8.88804 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.002418 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.486755 B =11575.832231 C =12123.042189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.210 3.790 10 N -0.671 5.671 11 C 0.048 3.952 12 H 0.074 0.926 13 C -0.115 4.115 14 C 0.095 3.905 15 N -0.561 5.561 16 C 0.164 3.836 17 C -0.174 4.174 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.069 4.069 21 Br -0.032 7.032 22 C -0.128 4.128 23 C 0.515 3.485 24 O -0.541 6.541 25 H 0.265 0.735 26 H -0.003 1.003 27 H -0.034 1.034 28 H 0.353 0.647 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -27.746 -4.469 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.305 5.305 11 C -0.066 4.066 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.026 4.026 15 N -0.285 5.285 16 C 0.068 3.932 17 C -0.195 4.195 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.149 4.149 21 Br 0.053 6.947 22 C -0.150 4.150 23 C 0.304 3.696 24 O -0.416 6.416 25 H 0.073 0.927 26 H 0.015 0.985 27 H -0.016 1.016 28 H 0.173 0.827 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.533 -27.889 -5.607 28.980 hybrid contribution -0.709 1.748 0.680 2.005 sum 4.824 -26.141 -4.927 27.035 Atomic orbital electron populations 1.70107 1.07972 1.28048 1.51412 1.26010 0.95796 1.03599 0.94563 0.85349 0.78065 0.77401 0.79241 1.19739 1.20855 1.18338 1.21508 0.93861 0.91349 1.50785 0.91445 1.19247 0.90548 0.88611 0.93325 1.60267 1.20424 0.99926 1.49891 1.22253 0.99423 0.92878 0.92004 0.90823 1.22924 1.00096 0.90458 1.01778 1.22672 1.01406 0.96648 0.81829 1.45954 1.61021 1.10218 1.11272 1.17898 0.97563 0.92057 0.85634 1.21815 1.01394 1.02240 0.94030 1.21265 0.98008 0.94014 0.96933 1.21324 0.98698 0.94999 0.98858 1.21653 1.03736 0.92858 0.96615 1.96725 1.87721 1.11879 1.98356 1.20796 1.03239 0.92197 0.98778 1.21659 0.75783 0.81012 0.91174 1.90593 1.44030 1.57523 1.49453 0.92664 0.98463 1.01593 0.82680 0.88061 0.85203 0.87436 0.86552 0.85528 0.83069 0.82634 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.98 45.42 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 8 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 9 C 0.21 11.72 5.24 85.56 0.45 12.16 16 10 N -0.67 -28.59 6.29 -495.61 -3.12 -31.71 16 11 C 0.05 1.63 3.24 44.91 0.15 1.77 16 12 H 0.07 2.56 7.88 -2.39 -0.02 2.54 16 13 C -0.11 -2.15 6.63 31.72 0.21 -1.94 16 14 C 0.09 1.56 6.52 86.89 0.57 2.13 16 15 N -0.56 -15.71 3.14 -627.36 -1.97 -17.68 16 16 C 0.16 4.50 6.60 38.15 0.25 4.75 16 17 C -0.17 -5.35 9.29 22.39 0.21 -5.14 16 18 C -0.08 -1.93 10.04 22.25 0.22 -1.71 16 19 C -0.12 -2.29 9.78 22.31 0.22 -2.07 16 20 C -0.07 -1.33 6.22 22.30 0.14 -1.19 16 21 Br -0.03 -0.50 33.70 -20.37 -0.69 -1.19 16 22 C -0.13 -2.63 9.16 22.41 0.21 -2.43 16 23 C 0.51 19.72 7.54 87.90 0.66 20.38 16 24 O -0.54 -26.52 13.74 -3.05 -0.04 -26.56 16 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.00 -0.18 7.13 -2.39 -0.02 -0.20 16 27 H -0.03 -1.95 8.08 -2.39 -0.02 -1.97 16 28 H 0.35 13.02 8.45 -89.70 -0.76 12.26 16 29 H 0.10 1.83 8.08 -2.38 -0.02 1.81 16 30 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 1.24 7.23 -2.39 -0.02 1.22 16 33 H 0.13 4.89 5.25 -2.91 -0.02 4.87 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.16 2.36 6.74 -2.91 -0.02 2.34 16 Total: -1.00 -78.43 323.39 0.83 -77.60 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.36 Total: 14.79 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.98 Total: -4.19 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.80 Total: -107.89 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.69 Total: -1.19 kcal Total: -78.43 0.83 -77.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570082532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.578 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds