Wall clock time and date at job start Tue Mar 31 2020 21:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99693 * 2 1 4 4 H 1.48500 * 109.47058 * 270.00566 * 3 2 1 5 5 H 1.48497 * 109.46853 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00396 * 3 2 1 7 7 C 1.37869 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00639 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00064 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43616 * 32.45670 * 11 10 9 13 13 C 1.54633 * 110.48639 * 155.00054 * 11 10 9 14 14 C 1.54474 * 101.76733 * 143.47791 * 13 11 10 15 15 N 1.46765 * 105.47326 * 334.57871 * 14 13 11 16 16 C 1.39920 * 124.35452 * 197.01987 * 15 14 13 17 17 C 1.38908 * 120.06195 * 354.20203 * 16 15 14 18 18 C 1.38095 * 119.94867 * 179.72969 * 17 16 15 19 19 C 1.38288 * 120.07930 * 359.97438 * 18 17 16 20 20 C 1.38349 * 120.13351 * 359.97438 * 19 18 17 21 21 Br 1.89102 * 119.97498 * 180.02562 * 20 19 18 22 22 C 1.38221 * 120.04935 * 0.04011 * 20 19 18 23 23 C 1.34423 * 111.29632 * 17.28578 * 15 14 13 24 24 O 1.21296 * 124.94129 * 179.30030 * 23 15 14 25 25 H 0.96997 * 120.00154 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47460 * 59.99720 * 9 7 2 27 27 H 1.09004 * 109.47132 * 300.00260 * 9 7 2 28 28 H 1.00894 * 111.00053 * 56.04160 * 10 9 7 29 29 H 1.08996 * 110.97098 * 25.35335 * 13 11 10 30 30 H 1.09007 * 110.96394 * 261.59458 * 13 11 10 31 31 H 1.08996 * 110.24486 * 215.58662 * 14 13 11 32 32 H 1.08994 * 110.25460 * 93.58106 * 14 13 11 33 33 H 1.07993 * 120.02415 * 359.74548 * 17 16 15 34 34 H 1.07993 * 119.96182 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.93382 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.04092 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9069 0.0001 12 1 0.5664 -4.8308 -0.5477 13 6 2.4014 -6.0087 -0.6121 14 6 2.0371 -7.2312 0.2591 15 7 1.5695 -6.6772 1.5352 16 6 1.4611 -7.4104 2.7220 17 6 1.6913 -8.7803 2.7170 18 6 1.5892 -9.5008 3.8906 19 6 1.2585 -8.8601 5.0707 20 6 1.0295 -7.4957 5.0797 21 35 0.5784 -6.6240 6.6960 22 6 1.1300 -6.7693 3.9080 23 6 1.2532 -5.3761 1.4160 24 8 0.8296 -4.6791 2.3137 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8902 27 1 0.6249 -2.5570 0.8897 28 1 2.8407 -3.5485 0.7807 29 1 3.4566 -5.7560 -0.5080 30 1 2.1451 -6.1840 -1.6570 31 1 2.9158 -7.8559 0.4187 32 1 1.2435 -7.8090 -0.2145 33 1 1.9502 -9.2814 1.7961 34 1 1.7685 -10.5657 3.8871 35 1 1.1797 -9.4258 5.9873 36 1 0.9508 -5.7043 3.9151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570082533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:49 Heat of formation + Delta-G solvation = 5.482462 kcal Electronic energy + Delta-G solvation = -20685.625596 eV Core-core repulsion = 17408.994748 eV Total energy + Delta-G solvation = -3276.630848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14024 -38.87595 -36.53425 -35.26234 -32.97277 -32.29673 -31.50983 -29.53380 -28.85655 -27.47209 -25.31637 -23.32014 -22.91102 -21.66995 -20.88286 -19.72453 -17.68705 -16.88615 -16.60429 -16.35454 -15.61738 -15.13718 -14.66964 -14.28828 -14.06910 -13.84130 -13.75694 -13.62093 -13.16206 -13.06025 -12.49476 -12.18833 -12.04782 -11.74610 -11.56021 -11.41445 -11.18991 -10.93059 -10.74289 -10.62912 -10.37026 -10.20422 -9.95903 -9.73423 -9.21011 -8.94642 -8.48771 -8.08649 -7.48831 -6.01716 -4.04054 0.88339 1.10298 1.50167 2.61576 2.72104 3.33783 3.39466 3.43382 3.52761 4.27855 4.42531 4.49559 4.70172 4.73553 4.85305 4.93478 5.00205 5.10303 5.21801 5.34078 5.35029 5.43390 5.53511 5.64446 5.91220 5.95615 6.08050 6.10385 6.15232 6.22957 6.83773 6.96843 7.10138 7.46008 7.71249 8.06522 8.10299 8.18506 8.47897 9.02978 9.60090 11.09455 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003310 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.048711 B = 8456.092340 C =10274.238142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.187 3.813 10 N -0.656 5.656 11 C 0.061 3.939 12 H 0.114 0.886 13 C -0.120 4.120 14 C 0.097 3.903 15 N -0.565 5.565 16 C 0.182 3.818 17 C -0.151 4.151 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.059 4.059 21 Br -0.048 7.048 22 C -0.134 4.134 23 C 0.484 3.516 24 O -0.489 6.489 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.005 0.995 28 H 0.335 0.665 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -23.232 7.536 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.060 3.940 10 N -0.285 5.285 11 C -0.054 4.054 12 H 0.132 0.868 13 C -0.158 4.158 14 C -0.026 4.026 15 N -0.289 5.289 16 C 0.086 3.914 17 C -0.172 4.172 18 C -0.106 4.106 19 C -0.148 4.148 20 C -0.139 4.139 21 Br 0.037 6.963 22 C -0.156 4.156 23 C 0.271 3.729 24 O -0.361 6.361 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.152 0.848 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.600 -22.292 7.904 23.794 hybrid contribution 0.107 0.568 0.571 0.812 sum 2.707 -21.724 8.475 23.475 Atomic orbital electron populations 1.69965 1.06070 1.26834 1.50561 1.24965 0.94870 0.99340 0.95247 0.86472 0.79707 0.83006 0.78054 1.20614 1.21265 1.19846 1.21100 0.93426 0.90115 1.50836 0.91990 1.19756 0.90677 0.86814 0.96714 1.61077 1.19865 0.99686 1.47914 1.22457 0.99491 0.93020 0.90412 0.86840 1.22703 1.01762 0.91744 0.99596 1.22328 1.00109 0.97702 0.82439 1.46110 1.62982 1.11227 1.08622 1.17785 0.97456 0.90885 0.85298 1.20901 1.04979 0.91812 0.99517 1.20887 0.98455 0.99822 0.91429 1.21023 1.02114 0.92474 0.99173 1.21614 1.05203 0.94933 0.92167 1.96727 1.92231 1.79375 1.27925 1.21668 1.01325 1.03133 0.89501 1.22837 0.76023 0.80560 0.93452 1.90672 1.42327 1.57884 1.45239 0.92865 0.95264 0.97661 0.84763 0.89010 0.88537 0.89781 0.90270 0.85103 0.84847 0.85131 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 4.90 5.26 -4.98 -0.03 4.87 16 10 N -0.66 -13.55 6.31 -108.00 -0.68 -14.23 16 11 C 0.06 1.00 3.25 -67.72 -0.22 0.78 16 12 H 0.11 1.88 7.82 -51.93 -0.41 1.48 16 13 C -0.12 -1.31 6.89 -25.10 -0.17 -1.48 16 14 C 0.10 0.90 6.26 -3.12 -0.02 0.88 16 15 N -0.56 -7.69 3.14 -112.27 -0.35 -8.04 16 16 C 0.18 2.45 6.59 -83.70 -0.55 1.90 16 17 C -0.15 -1.51 9.40 -39.39 -0.37 -1.88 16 18 C -0.09 -0.77 10.04 -39.62 -0.40 -1.17 16 19 C -0.13 -1.32 9.78 -39.52 -0.39 -1.70 16 20 C -0.06 -0.77 6.22 -39.55 -0.25 -1.02 16 21 Br -0.05 -0.61 33.70 -68.01 -2.29 -2.90 16 22 C -0.13 -2.05 9.02 -39.37 -0.36 -2.40 16 23 C 0.48 8.46 7.27 -10.86 -0.08 8.39 16 24 O -0.49 -10.63 14.14 5.54 0.08 -10.55 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 26 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.01 0.16 7.48 -51.93 -0.39 -0.23 16 28 H 0.33 6.98 8.44 -39.30 -0.33 6.65 16 29 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.13 0.95 7.02 -52.49 -0.37 0.58 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.17 3.03 5.27 -52.49 -0.28 2.76 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -33.03 324.61 -10.13 -43.16 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.25 Total: 3.50 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.24 Total: -6.34 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.30 Total: -48.71 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.03 -10.13 -43.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570082533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.643 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds