Wall clock time and date at job start Tue Mar 31 2020 21:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99693 * 2 1 4 4 H 1.48500 * 109.47058 * 270.00566 * 3 2 1 5 5 H 1.48497 * 109.46853 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47164 * 150.00396 * 3 2 1 7 7 C 1.37869 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00639 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00064 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.43616 * 32.45670 * 11 10 9 13 13 C 1.54633 * 110.48639 * 155.00054 * 11 10 9 14 14 C 1.54474 * 101.76733 * 143.47791 * 13 11 10 15 15 N 1.46765 * 105.47326 * 334.57871 * 14 13 11 16 16 C 1.39920 * 124.35452 * 197.01987 * 15 14 13 17 17 C 1.38908 * 120.06195 * 354.20203 * 16 15 14 18 18 C 1.38095 * 119.94867 * 179.72969 * 17 16 15 19 19 C 1.38288 * 120.07930 * 359.97438 * 18 17 16 20 20 C 1.38349 * 120.13351 * 359.97438 * 19 18 17 21 21 Br 1.89102 * 119.97498 * 180.02562 * 20 19 18 22 22 C 1.38221 * 120.04935 * 0.04011 * 20 19 18 23 23 C 1.34423 * 111.29632 * 17.28578 * 15 14 13 24 24 O 1.21296 * 124.94129 * 179.30030 * 23 15 14 25 25 H 0.96997 * 120.00154 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47460 * 59.99720 * 9 7 2 27 27 H 1.09004 * 109.47132 * 300.00260 * 9 7 2 28 28 H 1.00894 * 111.00053 * 56.04160 * 10 9 7 29 29 H 1.08996 * 110.97098 * 25.35335 * 13 11 10 30 30 H 1.09007 * 110.96394 * 261.59458 * 13 11 10 31 31 H 1.08996 * 110.24486 * 215.58662 * 14 13 11 32 32 H 1.08994 * 110.25460 * 93.58106 * 14 13 11 33 33 H 1.07993 * 120.02415 * 359.74548 * 17 16 15 34 34 H 1.07993 * 119.96182 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.93382 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.04092 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9069 0.0001 12 1 0.5664 -4.8308 -0.5477 13 6 2.4014 -6.0087 -0.6121 14 6 2.0371 -7.2312 0.2591 15 7 1.5695 -6.6772 1.5352 16 6 1.4611 -7.4104 2.7220 17 6 1.6913 -8.7803 2.7170 18 6 1.5892 -9.5008 3.8906 19 6 1.2585 -8.8601 5.0707 20 6 1.0295 -7.4957 5.0797 21 35 0.5784 -6.6240 6.6960 22 6 1.1300 -6.7693 3.9080 23 6 1.2532 -5.3761 1.4160 24 8 0.8296 -4.6791 2.3137 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8902 27 1 0.6249 -2.5570 0.8897 28 1 2.8407 -3.5485 0.7807 29 1 3.4566 -5.7560 -0.5080 30 1 2.1451 -6.1840 -1.6570 31 1 2.9158 -7.8559 0.4187 32 1 1.2435 -7.8090 -0.2145 33 1 1.9502 -9.2814 1.7961 34 1 1.7685 -10.5657 3.8871 35 1 1.1797 -9.4258 5.9873 36 1 0.9508 -5.7043 3.9151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570082533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:49 Heat of formation + Delta-G solvation = -17.393204 kcal Electronic energy + Delta-G solvation = -20686.617559 eV Core-core repulsion = 17408.994748 eV Total energy + Delta-G solvation = -3277.622811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27636 -39.87321 -37.81808 -36.84265 -34.77948 -33.37670 -32.80092 -30.57260 -29.85985 -29.03936 -26.94795 -24.36047 -23.97115 -23.54535 -21.89317 -20.90007 -18.85095 -18.49433 -17.95603 -17.51259 -16.87373 -16.64496 -16.26205 -15.30941 -15.25328 -15.14619 -14.94071 -14.62902 -14.52964 -14.32300 -13.98495 -13.78463 -13.32639 -13.11104 -12.91681 -12.70279 -12.48400 -12.39570 -12.24337 -11.99481 -11.87505 -11.36279 -11.31045 -11.14681 -11.06847 -10.67047 -9.87209 -9.28362 -9.04322 -8.24584 -6.36311 -0.01760 0.16147 0.55644 1.36703 1.39209 1.41688 1.52632 1.69724 2.38115 2.62968 3.08933 3.10709 3.46747 3.59677 3.89309 3.98959 4.03665 4.10967 4.12649 4.32398 4.37397 4.44494 4.60256 4.79488 4.99570 5.01887 5.09594 5.16027 5.20650 5.28192 5.28886 5.40397 5.55434 5.83260 5.94246 5.96994 6.21087 6.48413 6.79810 6.90033 7.33844 8.87469 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003310 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.048711 B = 8456.092340 C =10274.238142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.205 3.795 10 N -0.648 5.648 11 C 0.050 3.950 12 H 0.104 0.896 13 C -0.103 4.103 14 C 0.095 3.905 15 N -0.557 5.557 16 C 0.156 3.844 17 C -0.132 4.132 18 C -0.073 4.073 19 C -0.120 4.120 20 C -0.076 4.076 21 Br -0.059 7.059 22 C -0.169 4.169 23 C 0.473 3.527 24 O -0.550 6.550 25 H 0.265 0.735 26 H 0.008 0.992 27 H -0.039 1.039 28 H 0.332 0.668 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.154 0.846 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 -26.708 6.471 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.077 3.923 10 N -0.276 5.276 11 C -0.064 4.064 12 H 0.122 0.878 13 C -0.141 4.141 14 C -0.025 4.025 15 N -0.280 5.280 16 C 0.060 3.940 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.141 4.141 20 C -0.156 4.156 21 Br 0.026 6.974 22 C -0.191 4.191 23 C 0.262 3.738 24 O -0.427 6.427 25 H 0.074 0.926 26 H 0.026 0.974 27 H -0.021 1.021 28 H 0.149 0.851 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.172 0.828 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.667 -25.851 6.816 27.139 hybrid contribution -0.556 1.472 0.949 1.838 sum 4.110 -24.379 7.765 25.914 Atomic orbital electron populations 1.70111 1.07942 1.28013 1.51405 1.25994 0.95796 1.03573 0.94489 0.85296 0.78359 0.77704 0.78718 1.19128 1.20938 1.18847 1.21515 0.93834 0.91366 1.50850 0.91543 1.19308 0.90724 0.88759 0.93508 1.60976 1.18819 1.00215 1.47623 1.22681 1.00446 0.92557 0.90720 0.87824 1.22714 1.00491 0.89765 1.01172 1.22739 1.02675 0.97130 0.79958 1.46093 1.61720 1.09886 1.10305 1.18029 0.99127 0.92439 0.84361 1.21348 1.02476 0.89772 1.01638 1.21460 0.95869 1.01838 0.89991 1.21426 1.00453 0.91092 1.01134 1.21738 1.06482 0.96183 0.91184 1.96693 1.92397 1.80151 1.28132 1.21447 1.04214 1.01663 0.91804 1.22924 0.75838 0.82025 0.93044 1.90657 1.45268 1.59878 1.46894 0.92640 0.97357 1.02121 0.85118 0.88716 0.85655 0.85985 0.87148 0.81088 0.80165 0.82788 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 45.85 29.54 68.60 2.03 47.88 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.87 9.32 25.60 0.24 -31.63 16 8 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 9 C 0.20 11.49 5.26 85.56 0.45 11.94 16 10 N -0.65 -28.04 6.31 -495.61 -3.13 -31.16 16 11 C 0.05 1.69 3.25 44.91 0.15 1.84 16 12 H 0.10 3.64 7.82 -2.39 -0.02 3.62 16 13 C -0.10 -2.00 6.89 31.65 0.22 -1.78 16 14 C 0.10 1.38 6.26 86.83 0.54 1.93 16 15 N -0.56 -14.61 3.14 -627.71 -1.97 -16.58 16 16 C 0.16 4.00 6.59 38.15 0.25 4.26 16 17 C -0.13 -2.03 9.40 22.40 0.21 -1.82 16 18 C -0.07 -0.93 10.04 22.25 0.22 -0.71 16 19 C -0.12 -2.16 9.78 22.31 0.22 -1.94 16 20 C -0.08 -1.99 6.22 22.29 0.14 -1.86 16 21 Br -0.06 -1.56 33.70 -20.37 -0.69 -2.25 16 22 C -0.17 -5.40 9.02 22.41 0.20 -5.20 16 23 C 0.47 17.50 7.27 87.90 0.64 18.14 16 24 O -0.55 -26.49 14.14 -3.08 -0.04 -26.54 16 25 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.01 0.50 8.08 -2.39 -0.02 0.48 16 27 H -0.04 -2.50 7.48 -2.38 -0.02 -2.52 16 28 H 0.33 14.62 8.44 -89.70 -0.76 13.86 16 29 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 30 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.12 0.96 7.70 -2.39 -0.02 0.94 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.17 1.26 7.02 -2.91 -0.02 1.24 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.12 5.04 5.27 -2.91 -0.02 5.03 16 Total: -1.00 -80.81 324.61 0.78 -80.03 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.36 Total: 13.77 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 3.94 Total: -6.40 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.81 Total: -106.48 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 35 Polarization: -1.56 SS G_CDS: -0.69 Total: -2.25 kcal Total: -80.81 0.78 -80.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570082533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.633 kcal (2) G-P(sol) polarization free energy of solvation -80.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds