Wall clock time and date at job start Tue Mar 31 2020 20:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 119.99675 * 2 1 4 4 H 1.48504 * 109.46982 * 240.00357 * 3 2 1 5 5 H 1.48497 * 109.47531 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 120.00222 * 3 2 1 7 7 C 1.38947 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99599 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00239 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00165 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99551 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00066 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.46969 * 180.02562 * 12 10 9 14 14 C 1.34769 * 119.99851 * 180.02562 * 13 12 10 15 15 O 1.21657 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.46977 * 120.00073 * 180.02562 * 14 13 12 17 17 C 1.33693 * 124.65718 * 180.02562 * 16 14 13 18 18 C 1.40393 * 115.57475 * 180.02562 * 17 16 14 19 19 C 1.40065 * 112.57273 * 359.97438 * 18 17 16 20 20 C 1.39854 * 119.87462 * 179.97438 * 19 18 17 21 21 C 1.37457 * 120.20381 * 0.02562 * 20 19 18 22 22 C 1.38887 * 120.19965 * 359.72201 * 21 20 19 23 23 C 1.36087 * 120.68654 * 0.54178 * 22 21 20 24 24 Cl 1.73599 * 119.77302 * 179.74008 * 23 22 21 25 25 S 1.75485 * 124.65860 * 0.02562 * 16 14 13 26 26 H 0.96999 * 120.00659 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99951 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46984 * 60.00532 * 12 10 9 29 29 H 1.09004 * 109.47049 * 300.00367 * 12 10 9 30 30 H 0.96997 * 120.00423 * 0.02562 * 13 12 10 31 31 H 1.08001 * 122.21712 * 0.03650 * 17 16 14 32 32 H 1.07997 * 119.89770 * 180.02562 * 20 19 18 33 33 H 1.07995 * 119.89271 * 179.97438 * 21 20 19 34 34 H 1.07999 * 119.65756 * 180.29790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0038 15 8 0.5506 -7.4694 -0.0039 16 6 2.7018 -8.3642 -0.0037 17 6 2.3600 -9.6567 -0.0052 18 6 3.4293 -10.5664 -0.0043 19 6 4.6769 -9.9296 -0.0024 20 6 5.8486 -10.6931 -0.0008 21 6 5.7795 -12.0660 -0.0014 22 6 4.5455 -12.7033 0.0021 23 6 3.3914 -11.9823 -0.0049 24 17 1.8619 -12.8035 -0.0072 25 16 4.4474 -8.1847 -0.0016 26 1 -0.4851 0.8400 0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6169 -4.9201 -0.8920 29 1 0.6175 -4.9213 0.8880 30 1 3.1495 -5.7992 -0.0022 31 1 1.3294 -9.9797 -0.0072 32 1 6.8108 -10.2026 0.0011 33 1 6.6875 -12.6506 -0.0005 34 1 4.5014 -13.7824 0.0064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588078609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:01 Heat of formation + Delta-G solvation = -36.393856 kcal Electronic energy + Delta-G solvation = -22388.625919 eV Core-core repulsion = 18631.526641 eV Total energy + Delta-G solvation = -3757.099279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32419 -39.58660 -38.19339 -36.87837 -35.60705 -34.56617 -33.78678 -31.44297 -31.24803 -30.20012 -27.86635 -25.13087 -24.31254 -23.46967 -21.59472 -20.26138 -19.60127 -18.84718 -18.11415 -17.32784 -16.40845 -16.25823 -15.64956 -15.51463 -15.28089 -15.10291 -14.57074 -14.55486 -14.36952 -14.10827 -13.87790 -13.53123 -13.22298 -12.49292 -12.46881 -12.29222 -12.04993 -11.92869 -11.66400 -11.51151 -11.42817 -11.13074 -10.96530 -10.53224 -10.35491 -10.14620 -9.89335 -9.66617 -9.12056 -8.87799 -8.69884 -8.14471 -8.10015 -6.54890 -3.97216 -0.10695 0.63012 1.04110 1.42773 1.60247 1.79444 2.97589 3.05944 3.11315 3.19941 3.21399 3.24463 3.68587 4.07199 4.23685 4.34850 4.45487 4.75297 4.78705 4.80397 4.98840 5.13220 5.23219 5.31572 5.51614 5.74097 5.80313 5.83783 5.85523 5.86468 5.98984 6.15802 6.45444 7.42599 7.54681 7.86861 8.15592 8.40465 9.00441 9.34210 9.81786 10.61748 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002146 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.487930 B =13043.489780 C =14024.830885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.698 5.698 14 C 0.583 3.417 15 O -0.529 6.529 16 C -0.208 4.208 17 C -0.048 4.048 18 C -0.077 4.077 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.086 4.086 22 C -0.113 4.113 23 C 0.012 3.988 24 Cl -0.059 7.059 25 S 0.160 5.840 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.159 0.841 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -24.539 0.002 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.352 5.352 14 C 0.367 3.633 15 O -0.407 6.407 16 C -0.327 4.327 17 C -0.080 4.080 18 C -0.086 4.086 19 C -0.245 4.245 20 C -0.101 4.101 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.017 4.017 24 Cl -0.030 7.030 25 S 0.428 5.572 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.248 0.752 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.153 -23.148 0.004 24.892 hybrid contribution -0.878 -0.300 -0.002 0.928 sum 8.275 -23.448 0.002 24.865 Atomic orbital electron populations 1.69604 1.06023 1.28729 1.48994 1.25339 0.95682 0.99984 0.96665 0.85857 0.78780 0.80058 0.79190 1.19738 1.20828 1.19734 1.19688 0.93464 0.81935 1.48473 0.87660 1.41779 1.09512 1.04424 1.62352 1.19661 0.88289 0.84914 0.85989 1.90501 1.13639 1.86730 1.57493 1.21046 0.91647 0.85441 1.03751 1.45573 1.11743 1.04396 1.73454 1.16949 0.87191 0.81728 0.77385 1.90830 1.15014 1.84454 1.50447 1.23772 0.97710 0.97757 1.13506 1.20166 1.00710 0.90167 0.96926 1.17891 0.92322 0.92279 1.06147 1.23050 0.96593 0.98216 1.06620 1.20618 0.96283 0.93498 0.99745 1.21047 0.97529 0.93735 0.98467 1.20635 0.90701 1.00757 1.01282 1.20590 0.87793 0.90144 1.03208 1.98395 1.29837 1.78149 1.96576 1.84560 0.98643 0.98896 1.75066 0.91467 0.76970 0.89301 0.89309 0.75165 0.82320 0.84499 0.84022 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.05 55.50 0.72 -22.90 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 10 C 0.43 9.68 7.85 -10.99 -0.09 9.59 16 11 O -0.60 -15.14 15.24 5.55 0.08 -15.05 16 12 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 13 N -0.70 -12.00 5.52 -62.71 -0.35 -12.34 16 14 C 0.58 9.68 7.79 -12.72 -0.10 9.58 16 15 O -0.53 -10.01 16.72 5.23 0.09 -9.92 16 16 C -0.21 -2.90 6.32 -37.64 -0.24 -3.13 16 17 C -0.05 -0.61 9.40 -40.36 -0.38 -0.99 16 18 C -0.08 -0.86 5.85 -107.10 -0.63 -1.49 16 19 C -0.13 -1.33 6.50 -38.29 -0.25 -1.58 16 20 C -0.08 -0.61 10.07 -39.26 -0.40 -1.00 16 21 C -0.09 -0.53 10.03 -39.63 -0.40 -0.93 16 22 C -0.11 -0.81 9.69 -40.11 -0.39 -1.20 16 23 C 0.01 0.11 6.35 -39.06 -0.25 -0.14 16 24 Cl -0.06 -0.55 28.45 -51.86 -1.48 -2.02 16 25 S 0.16 1.86 22.26 -107.50 -2.39 -0.53 16 26 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.41 7.00 6.48 -40.82 -0.26 6.73 16 31 H 0.16 2.01 7.78 -52.49 -0.41 1.60 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -30.93 336.68 -9.33 -40.25 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -2.62 Total: 12.68 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -3.38 Total: 2.88 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.32 Total: -48.68 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.17 Total: -24.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.39 Total: -0.53 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.93 -9.33 -40.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.860 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds