Wall clock time and date at job start Tue Mar 31 2020 21:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99853 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00103 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99902 * 3 2 1 7 7 C 1.38955 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 359.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.47489 * 110.99718 * 265.96682 * 13 12 10 15 15 C 1.53504 * 87.93261 * 221.29864 * 14 13 12 16 16 C 1.47481 * 110.99795 * 170.00232 * 13 12 10 17 17 H 1.08998 * 113.48211 * 23.93020 * 16 13 12 18 18 C 1.50707 * 113.47356 * 253.46555 * 16 13 12 19 19 C 1.38244 * 119.98782 * 319.72543 * 18 16 13 20 20 C 1.38213 * 120.00781 * 179.76898 * 19 18 16 21 21 C 1.38324 * 119.98990 * 0.50820 * 20 19 18 22 22 Br 1.89106 * 120.01140 * 179.76986 * 21 20 19 23 23 C 1.38327 * 119.97885 * 359.74335 * 21 20 19 24 24 C 1.38211 * 119.99200 * 0.02562 * 23 21 20 25 25 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 27 27 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 28 28 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 29 29 H 1.09000 * 113.47383 * 336.06630 * 14 13 12 30 30 H 1.08999 * 113.47582 * 106.53108 * 14 13 12 31 31 H 1.09005 * 114.17330 * 272.37674 * 15 14 13 32 32 H 1.08998 * 114.34559 * 139.68370 * 15 14 13 33 33 H 1.07997 * 119.99615 * 0.02562 * 19 18 16 34 34 H 1.07998 * 120.00858 * 180.27122 * 20 19 18 35 35 H 1.08008 * 120.00120 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99852 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 1.4690 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5608 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 6.3179 -4.2221 1.3727 15 6 7.5913 -4.8919 0.8377 16 6 7.5050 -3.8017 -0.2397 17 1 8.0194 -2.8802 0.0328 18 6 7.8717 -4.2891 -1.6178 19 6 7.1741 -5.3376 -2.1882 20 6 7.5069 -5.7818 -3.4539 21 6 8.5450 -5.1842 -4.1457 22 35 9.0051 -5.7958 -5.8750 23 6 9.2461 -4.1385 -3.5724 24 6 8.9095 -3.6918 -2.3086 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 0.0047 27 1 5.9241 -1.8567 -0.8900 28 1 5.9241 -1.8567 0.8899 29 1 6.5154 -3.4127 2.0755 30 1 5.5770 -4.9309 1.7425 31 1 7.4393 -5.9038 0.4619 32 1 8.4562 -4.8023 1.4949 33 1 6.3663 -5.8068 -1.6463 34 1 6.9591 -6.5980 -3.9013 35 1 10.0564 -3.6713 -4.1125 36 1 9.4565 -2.8752 -1.8611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595846033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:54 Heat of formation + Delta-G solvation = 38.510047 kcal Electronic energy + Delta-G solvation = -20447.536640 eV Core-core repulsion = 17172.337976 eV Total energy + Delta-G solvation = -3275.198664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73139 -38.84678 -37.83142 -33.94850 -32.71191 -31.69280 -31.18639 -30.68937 -29.61352 -25.96968 -25.41726 -23.58532 -23.00276 -21.71612 -19.59901 -19.38932 -18.37477 -17.14866 -16.14374 -15.81665 -15.45414 -15.11745 -15.02151 -14.72315 -14.29709 -13.69040 -13.59432 -13.34692 -13.08595 -12.80490 -12.61199 -12.22052 -11.93642 -11.78598 -11.51630 -11.36131 -11.21777 -10.93236 -10.84664 -10.59948 -10.49420 -10.45026 -9.96913 -9.55392 -9.13205 -8.95417 -8.70563 -8.31601 -8.16523 -6.30005 -3.81250 0.92050 1.20872 1.46865 3.01603 3.06808 3.14686 3.40208 3.75016 3.95668 4.10737 4.36394 4.57673 4.68521 4.76179 4.79186 4.85899 5.15614 5.20756 5.22440 5.31508 5.34752 5.51041 5.53207 5.55428 5.63551 5.83498 5.87539 5.94130 6.01768 6.08441 6.15959 6.33114 6.52469 6.70734 7.07103 7.59253 8.15436 8.61725 8.96763 9.43746 9.85548 10.83328 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002692 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.547551 B =10398.931341 C =11313.123582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.457 3.543 11 O -0.556 6.556 12 C 0.005 3.995 13 N -0.431 5.431 14 C 0.002 3.998 15 C -0.134 4.134 16 C 0.055 3.945 17 H 0.086 0.914 18 C -0.050 4.050 19 C -0.078 4.078 20 C -0.094 4.094 21 C -0.092 4.092 22 Br -0.061 7.061 23 C -0.096 4.096 24 C -0.110 4.110 25 H 0.273 0.727 26 H 0.369 0.631 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.326 -8.311 -5.852 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.242 3.758 11 O -0.437 6.437 12 C -0.127 4.127 13 N -0.152 5.152 14 C -0.127 4.127 15 C -0.172 4.172 16 C -0.054 4.054 17 H 0.104 0.896 18 C -0.051 4.051 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.171 4.171 22 Br 0.024 6.976 23 C -0.116 4.116 24 C -0.130 4.130 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.361 -9.465 -6.942 26.144 hybrid contribution 0.884 2.332 0.784 2.614 sum 24.245 -7.133 -6.158 26.012 Atomic orbital electron populations 1.69622 1.05619 1.27434 1.49615 1.25029 0.95480 0.97916 0.97760 0.86678 0.79705 0.84131 0.78887 1.19620 1.20191 1.19613 1.19421 0.79230 0.96604 1.47957 0.86318 1.42218 1.07518 1.06091 1.67602 1.19525 0.87773 0.84565 0.83924 1.90563 1.69227 1.30894 1.52967 1.22551 0.96732 0.91385 1.02043 1.68816 1.10656 1.18640 1.17118 1.23797 0.97231 0.99997 0.91631 1.23246 0.98172 0.98854 0.96907 1.22450 0.91999 0.98853 0.92138 0.89638 1.19740 0.94846 0.95303 0.95189 1.21136 0.98613 0.95796 0.94184 1.21165 0.95626 0.99795 0.94779 1.21774 1.01353 1.01153 0.92838 1.96692 1.92936 1.88649 1.19312 1.21000 0.99504 0.95602 0.95508 1.21030 0.97714 1.00056 0.94176 0.91646 0.79827 0.89398 0.92073 0.91311 0.88949 0.88609 0.90419 0.84056 0.85041 0.85265 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.47 27.74 -169.99 -4.72 14.75 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.43 6.51 56.52 0.37 -5.06 16 7 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.28 5.09 -10.96 -0.06 -14.33 16 10 C 0.46 10.47 7.85 -10.98 -0.09 10.38 16 11 O -0.56 -15.12 16.01 5.55 0.09 -15.03 16 12 C 0.01 0.08 5.30 -4.98 -0.03 0.06 16 13 N -0.43 -6.51 5.12 -239.37 -1.23 -7.74 16 14 C 0.00 0.03 7.71 -7.55 -0.06 -0.03 16 15 C -0.13 -1.32 7.91 -26.20 -0.21 -1.52 16 16 C 0.06 0.62 3.25 -72.58 -0.24 0.38 16 17 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 18 C -0.05 -0.57 5.39 -104.62 -0.56 -1.14 16 19 C -0.08 -0.96 8.86 -39.59 -0.35 -1.31 16 20 C -0.09 -1.08 9.79 -39.56 -0.39 -1.47 16 21 C -0.09 -1.02 6.22 -39.52 -0.25 -1.26 16 22 Br -0.06 -0.62 33.70 -68.01 -2.29 -2.91 16 23 C -0.10 -0.97 9.79 -39.56 -0.39 -1.36 16 24 C -0.11 -1.10 9.71 -39.59 -0.38 -1.49 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 27 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 28 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 29 H 0.07 0.79 7.42 -51.93 -0.39 0.40 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.10 0.94 7.63 -51.93 -0.40 0.55 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.84 7.81 -52.49 -0.41 1.43 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.13 0.98 8.05 -52.49 -0.42 0.56 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -32.95 327.76 -9.97 -42.92 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.30 Total: 9.15 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.18 Total: -6.54 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.51 Total: -47.28 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.09 Total: -15.03 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.72 Total: 14.75 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.95 -9.97 -42.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595846033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.426 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds