Wall clock time and date at job start Tue Mar 31 2020 21:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99853 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00103 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99902 * 3 2 1 7 7 C 1.38955 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 359.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.47489 * 110.99718 * 265.96682 * 13 12 10 15 15 C 1.53504 * 87.93261 * 221.29864 * 14 13 12 16 16 C 1.47481 * 110.99795 * 170.00232 * 13 12 10 17 17 H 1.08998 * 113.48211 * 23.93020 * 16 13 12 18 18 C 1.50707 * 113.47356 * 253.46555 * 16 13 12 19 19 C 1.38244 * 119.98782 * 319.72543 * 18 16 13 20 20 C 1.38213 * 120.00781 * 179.76898 * 19 18 16 21 21 C 1.38324 * 119.98990 * 0.50820 * 20 19 18 22 22 Br 1.89106 * 120.01140 * 179.76986 * 21 20 19 23 23 C 1.38327 * 119.97885 * 359.74335 * 21 20 19 24 24 C 1.38211 * 119.99200 * 0.02562 * 23 21 20 25 25 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 27 27 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 28 28 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 29 29 H 1.09000 * 113.47383 * 336.06630 * 14 13 12 30 30 H 1.08999 * 113.47582 * 106.53108 * 14 13 12 31 31 H 1.09005 * 114.17330 * 272.37674 * 15 14 13 32 32 H 1.08998 * 114.34559 * 139.68370 * 15 14 13 33 33 H 1.07997 * 119.99615 * 0.02562 * 19 18 16 34 34 H 1.07998 * 120.00858 * 180.27122 * 20 19 18 35 35 H 1.08008 * 120.00120 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99852 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 1.4690 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5608 -2.3706 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 6.3179 -4.2221 1.3727 15 6 7.5913 -4.8919 0.8377 16 6 7.5050 -3.8017 -0.2397 17 1 8.0194 -2.8802 0.0328 18 6 7.8717 -4.2891 -1.6178 19 6 7.1741 -5.3376 -2.1882 20 6 7.5069 -5.7818 -3.4539 21 6 8.5450 -5.1842 -4.1457 22 35 9.0051 -5.7958 -5.8750 23 6 9.2461 -4.1385 -3.5724 24 6 8.9095 -3.6918 -2.3086 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3633 0.0047 27 1 5.9241 -1.8567 -0.8900 28 1 5.9241 -1.8567 0.8899 29 1 6.5154 -3.4127 2.0755 30 1 5.5770 -4.9309 1.7425 31 1 7.4393 -5.9038 0.4619 32 1 8.4562 -4.8023 1.4949 33 1 6.3663 -5.8068 -1.6463 34 1 6.9591 -6.5980 -3.9013 35 1 10.0564 -3.6713 -4.1125 36 1 9.4565 -2.8752 -1.8611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595846033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:54 Heat of formation + Delta-G solvation = 15.221716 kcal Electronic energy + Delta-G solvation = -20448.546498 eV Core-core repulsion = 17172.337976 eV Total energy + Delta-G solvation = -3276.208522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70966 -40.08994 -39.28249 -35.98291 -33.78524 -33.55046 -32.03400 -31.84240 -30.47528 -27.61978 -26.31133 -25.16071 -23.82583 -22.56878 -21.29310 -20.47153 -20.28407 -18.14100 -17.53361 -17.10289 -16.68796 -16.49146 -16.15376 -15.92285 -15.25216 -15.17444 -14.96703 -14.48410 -14.38453 -14.15142 -14.04180 -13.67748 -13.11342 -12.86300 -12.75268 -12.43235 -12.36558 -12.17541 -12.00606 -11.94525 -11.70900 -11.51314 -11.36918 -11.25124 -10.46913 -10.24656 -9.94561 -9.75556 -9.48257 -8.41695 -6.02638 0.08906 0.39595 0.65603 1.28537 1.35261 1.43748 1.97185 2.22580 2.50446 2.80234 3.13873 3.30641 3.54951 3.79935 3.87277 3.99178 4.01703 4.14431 4.31219 4.35474 4.37711 4.43786 4.49165 4.59315 4.75239 4.84786 4.98530 5.06279 5.15171 5.26657 5.30175 5.37581 5.53669 5.64010 5.89042 5.92806 6.12011 6.60066 6.88700 7.40213 7.98882 8.76340 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002692 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.547551 B =10398.931341 C =11313.123582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.229 1.229 7 C -0.328 4.328 8 H 0.052 0.948 9 N -0.594 5.594 10 C 0.453 3.547 11 O -0.610 6.610 12 C 0.019 3.981 13 N -0.472 5.472 14 C -0.005 4.005 15 C -0.116 4.116 16 C 0.064 3.936 17 H 0.118 0.882 18 C -0.060 4.060 19 C -0.096 4.096 20 C -0.107 4.107 21 C -0.102 4.102 22 Br -0.056 7.056 23 C -0.097 4.097 24 C -0.102 4.102 25 H 0.279 0.721 26 H 0.389 0.611 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.674 -5.635 -5.615 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.152 1.152 7 C -0.458 4.458 8 H 0.070 0.930 9 N -0.237 5.237 10 C 0.241 3.759 11 O -0.494 6.494 12 C -0.113 4.113 13 N -0.195 5.195 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.045 4.045 17 H 0.136 0.864 18 C -0.061 4.061 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.182 4.182 22 Br 0.029 6.971 23 C -0.117 4.117 24 C -0.121 4.121 25 H 0.088 0.912 26 H 0.225 0.775 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 27.745 -6.806 -6.704 29.343 hybrid contribution -0.534 1.321 0.673 1.576 sum 27.211 -5.485 -6.031 28.406 Atomic orbital electron populations 1.69812 1.08197 1.29238 1.50496 1.26139 0.96482 1.02770 0.96093 0.85350 0.79546 0.76604 0.79912 1.18280 1.19943 1.15224 1.18987 0.81597 0.94828 1.50346 0.92989 1.42053 1.05749 1.07595 1.68273 1.20927 0.90855 0.83213 0.80919 1.90539 1.71356 1.32918 1.54537 1.22473 0.90815 0.93238 1.04740 1.68772 1.13905 1.17952 1.18839 1.23887 0.97945 1.00416 0.91116 1.23166 0.97694 0.98022 0.96515 1.22564 0.89348 1.00406 0.92164 0.86448 1.19886 0.95371 0.95131 0.95687 1.21079 0.98887 0.96888 0.94653 1.21225 0.96287 1.00277 0.94885 1.21936 1.01401 1.01645 0.93192 1.96691 1.92787 1.88735 1.18882 1.21327 0.99590 0.94950 0.95795 1.21347 0.96906 1.00173 0.93716 0.91160 0.77536 0.87105 0.88448 0.89346 0.91872 0.89493 0.87090 0.86080 0.85055 0.83170 0.82120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.96 21.66 0.30 -56.90 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 3 Si 0.97 38.91 27.74 68.60 1.90 40.81 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.23 -7.64 6.51 99.48 0.65 -6.99 16 7 C -0.33 -19.57 10.16 84.04 0.85 -18.71 16 8 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 9 N -0.59 -28.40 5.09 -306.98 -1.56 -29.97 16 10 C 0.45 20.84 7.85 87.66 0.69 21.53 16 11 O -0.61 -34.91 16.01 -3.07 -0.05 -34.96 16 12 C 0.02 0.57 5.30 85.56 0.45 1.02 16 13 N -0.47 -13.55 5.12 -911.23 -4.66 -18.21 16 14 C -0.01 -0.12 7.71 83.57 0.64 0.52 16 15 C -0.12 -1.97 7.91 30.94 0.24 -1.73 16 16 C 0.06 1.20 3.25 41.44 0.13 1.34 16 17 H 0.12 1.51 7.85 -2.39 -0.02 1.49 16 18 C -0.06 -1.22 5.39 -19.86 -0.11 -1.33 16 19 C -0.10 -2.33 8.86 22.26 0.20 -2.14 16 20 C -0.11 -2.46 9.79 22.28 0.22 -2.24 16 21 C -0.10 -2.12 6.22 22.31 0.14 -1.98 16 22 Br -0.06 -1.07 33.70 -20.37 -0.69 -1.76 16 23 C -0.10 -1.67 9.79 22.28 0.22 -1.45 16 24 C -0.10 -1.64 9.71 22.26 0.22 -1.42 16 25 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 27 H 0.11 2.84 8.08 -2.38 -0.02 2.82 16 28 H 0.10 2.24 7.30 -2.39 -0.02 2.23 16 29 H 0.09 1.73 7.42 -2.39 -0.02 1.71 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.63 7.63 -2.38 -0.02 1.61 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 3.36 7.81 -2.91 -0.02 3.34 16 34 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.16 1.51 8.05 -2.91 -0.02 1.48 16 Total: -1.00 -79.06 327.76 0.12 -78.94 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.51 Total: 29.10 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.37 Total: -7.06 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -5.92 Total: -105.07 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.05 Total: -34.96 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.90 Total: 40.81 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.69 Total: -1.76 kcal Total: -79.06 0.12 -78.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595846033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.157 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds