Wall clock time and date at job start Tue Mar 31 2020 21:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39727 * 111.00146 * 172.60886 * 14 13 12 16 16 C 1.38902 * 120.06593 * 124.02611 * 15 14 13 17 17 C 1.38101 * 119.93286 * 179.77045 * 16 15 14 18 18 C 1.38362 * 120.06546 * 0.50579 * 17 16 15 19 19 Br 1.89103 * 119.93477 * 179.76912 * 18 17 16 20 20 C 1.38356 * 120.12703 * 359.74409 * 18 17 16 21 21 C 1.38099 * 120.06815 * 359.97438 * 20 18 17 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 29 29 H 1.08003 * 120.02897 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.96883 * 180.24826 * 17 16 15 31 31 H 1.08005 * 119.96685 * 179.97438 * 20 18 17 32 32 H 1.08004 * 120.03158 * 180.02562 * 21 20 18 33 33 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 34 34 H 1.08996 * 109.49043 * 183.06336 * 22 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 36 36 H 1.09002 * 109.62700 * 111.28074 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7580 -6.9792 1.5197 16 6 2.9121 -7.7166 2.3384 17 6 3.4304 -8.7021 3.1553 18 6 4.7919 -8.9482 3.1666 19 35 5.4983 -10.2941 4.2916 20 6 5.6374 -8.2117 2.3561 21 6 5.1243 -7.2289 1.5328 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8055 0.8864 29 1 1.8498 -7.5222 2.3329 30 1 2.7727 -9.2786 3.7891 31 1 6.6999 -8.4056 2.3673 32 1 5.7848 -6.6546 0.9000 33 1 1.5327 -5.5231 1.8288 34 1 1.3333 -6.8758 0.6885 35 1 0.1612 -4.7606 -0.0453 36 1 1.3736 -5.3370 -1.2167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598151051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:21 Heat of formation + Delta-G solvation = -7.857127 kcal Electronic energy + Delta-G solvation = -20837.011417 eV Core-core repulsion = 17559.802122 eV Total energy + Delta-G solvation = -3277.209295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44538 -39.76375 -38.04474 -35.33753 -34.63427 -32.84580 -32.44323 -31.64963 -29.96506 -28.47779 -26.94769 -25.31510 -23.31214 -22.97221 -22.04073 -20.56880 -18.95487 -18.21937 -17.58404 -16.80059 -16.58067 -16.18577 -15.94959 -15.77843 -15.66634 -15.11147 -14.99118 -14.58606 -14.41784 -14.10847 -13.50287 -13.30869 -13.12912 -12.85195 -12.74628 -12.67193 -12.29512 -12.26206 -12.08382 -12.01484 -11.95040 -11.70989 -11.20436 -10.93934 -10.54750 -10.03530 -9.81169 -9.16985 -8.83346 -8.30107 -6.85059 0.10614 0.32565 0.70881 1.40976 1.41848 1.57247 2.22536 2.40261 2.45626 2.72777 2.88029 3.57223 3.71546 3.84920 3.93153 3.98414 4.12980 4.29155 4.31060 4.34754 4.44585 4.53028 4.58540 4.69039 4.77588 4.88672 4.96776 5.03932 5.11334 5.18625 5.25219 5.37974 5.60236 5.70985 5.88847 6.11051 6.17714 6.36689 6.87259 7.39063 8.44582 8.66038 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.002347 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.162184 B =11925.595208 C =12313.671779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.244 1.244 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.097 0.903 9 C 0.541 3.459 10 O -0.632 6.632 11 N -0.649 5.649 12 C 0.123 3.877 13 C 0.053 3.947 14 N -0.487 5.487 15 C 0.121 3.879 16 C -0.178 4.178 17 C -0.066 4.066 18 C -0.131 4.131 19 Br -0.054 7.054 20 C -0.064 4.064 21 C -0.138 4.138 22 C 0.053 3.947 23 C 0.122 3.878 24 H 0.274 0.726 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.036 0.964 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.417 -18.756 6.832 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.167 1.167 6 H -0.201 1.201 7 C -0.604 4.604 8 H 0.114 0.886 9 C 0.348 3.652 10 O -0.520 6.520 11 N -0.386 5.386 12 C -0.001 4.001 13 C -0.072 4.072 14 N -0.201 5.201 15 C 0.022 3.978 16 C -0.200 4.200 17 C -0.086 4.086 18 C -0.211 4.211 19 Br 0.031 6.969 20 C -0.084 4.084 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.002 4.002 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.928 -19.223 6.757 25.259 hybrid contribution -0.688 1.145 0.363 1.384 sum 14.239 -18.079 7.119 24.089 Atomic orbital electron populations 1.70190 1.09622 1.28928 1.36591 1.27001 0.95474 1.05012 0.91188 0.85051 0.78982 0.75136 0.79382 1.18748 1.16734 1.20086 1.21502 0.94891 0.89618 1.54341 0.88559 1.18683 0.86567 0.84123 0.75874 1.90543 1.16663 1.87322 1.57432 1.48162 1.06652 1.05451 1.78382 1.21816 0.80052 0.99631 0.98558 1.22765 1.00456 0.86478 0.97529 1.59001 1.05513 1.06130 1.49474 1.19345 0.94306 0.94022 0.90138 1.21488 1.00982 0.99667 0.97816 1.21106 0.93572 0.96371 0.97566 1.21804 0.95726 1.00657 1.02897 1.96681 1.85767 1.49854 1.64621 1.21179 1.00484 0.93361 0.93411 1.20995 0.93295 1.00181 1.01426 1.22564 0.86636 1.00520 0.97763 1.21321 0.96741 0.83942 0.98229 0.91639 0.91310 0.88822 0.94840 0.86332 0.84458 0.83887 0.82988 0.83183 0.94609 0.87350 0.92013 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.03 11.84 21.83 0.26 -49.77 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 39.84 29.56 68.60 2.03 41.87 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 6 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.57 -31.14 8.86 24.83 0.22 -30.92 16 8 H 0.10 4.63 5.74 -2.91 -0.02 4.62 16 9 C 0.54 30.97 7.63 86.36 0.66 31.63 16 10 O -0.63 -42.14 14.49 -4.31 -0.06 -42.20 16 11 N -0.65 -28.94 3.00 -822.13 -2.47 -31.41 16 12 C 0.12 4.19 6.50 86.50 0.56 4.75 16 13 C 0.05 1.46 5.44 86.54 0.47 1.94 16 14 N -0.49 -13.08 4.67 -693.42 -3.24 -16.32 16 15 C 0.12 2.83 5.65 38.20 0.22 3.04 16 16 C -0.18 -3.95 8.83 22.40 0.20 -3.75 16 17 C -0.07 -1.30 9.78 22.27 0.22 -1.09 16 18 C -0.13 -2.51 6.22 22.33 0.14 -2.37 16 19 Br -0.05 -0.93 33.70 -20.37 -0.69 -1.62 16 20 C -0.06 -1.14 9.78 22.26 0.22 -0.92 16 21 C -0.14 -2.68 9.14 22.40 0.20 -2.47 16 22 C 0.05 1.58 4.30 86.38 0.37 1.95 16 23 C 0.12 4.68 6.61 86.35 0.57 5.25 16 24 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 25 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.09 3.29 5.46 -2.39 -0.01 3.28 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.12 2.41 6.66 -2.39 -0.02 2.40 16 29 H 0.14 2.93 5.81 -2.91 -0.02 2.91 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.15 2.38 7.15 -2.91 -0.02 2.36 16 33 H 0.04 1.17 7.81 -2.39 -0.02 1.15 16 34 H 0.11 2.67 6.90 -2.39 -0.02 2.66 16 35 H 0.06 2.73 7.04 -2.39 -0.02 2.71 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -73.36 314.21 1.46 -71.90 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.11 Total: 18.47 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.52 Total: 9.07 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.45 Total: -97.49 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.06 Total: -42.20 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.69 Total: -1.62 kcal Total: -73.36 1.46 -71.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598151051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.045 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds