Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36931 * 120.00471 * 2 1 4 4 H 1.07995 * 120.00590 * 203.16262 * 3 2 1 5 5 C 1.38821 * 119.99697 * 23.16099 * 3 2 1 6 6 N 1.31619 * 119.99715 * 13.43917 * 5 3 2 7 7 Si 1.86798 * 119.99895 * 193.43088 * 5 3 2 8 8 H 1.48502 * 109.46817 * 60.00517 * 7 5 3 9 9 H 1.48503 * 109.47052 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47535 * 300.00206 * 7 5 3 11 11 C 1.46501 * 119.99935 * 180.02562 * 2 1 3 12 12 H 1.08998 * 108.91694 * 178.80060 * 11 2 1 13 13 C 1.50987 * 108.99730 * 59.99549 * 11 2 1 14 14 C 1.49703 * 113.46925 * 166.03168 * 13 11 2 15 15 C 1.49379 * 115.78958 * 77.60119 * 14 13 11 16 16 C 1.39571 * 115.51974 * 144.34381 * 15 14 13 17 17 C 1.37661 * 121.49128 * 180.50089 * 16 15 14 18 18 Br 1.89099 * 120.28579 * 180.02562 * 17 16 15 19 19 C 1.38408 * 119.42388 * 0.03215 * 17 16 15 20 20 C 1.37316 * 119.54506 * 359.80241 * 19 17 16 21 21 C 1.37831 * 125.15861 * 324.50237 * 15 14 13 22 22 N 1.37605 * 126.35679 * 357.90443 * 21 15 14 23 23 C 1.30274 * 136.29311 * 9.46867 * 22 21 15 24 24 O 1.21287 * 116.41260 * 169.98886 * 23 22 21 25 25 H 1.09005 * 109.46870 * 275.14253 * 1 2 3 26 26 H 1.09000 * 109.47142 * 35.13920 * 1 2 3 27 27 H 1.08996 * 109.47581 * 155.14988 * 1 2 3 28 28 H 0.96997 * 119.99485 * 180.02562 * 6 5 3 29 29 H 1.08995 * 108.67891 * 45.00174 * 13 11 2 30 30 H 1.08997 * 108.57904 * 286.99370 * 13 11 2 31 31 H 1.08997 * 108.22076 * 315.95415 * 14 13 11 32 32 H 1.09005 * 108.06223 * 199.12069 * 14 13 11 33 33 H 1.07987 * 119.25431 * 0.47892 * 16 15 14 34 34 H 1.08001 * 120.22692 * 179.78436 * 19 17 16 35 35 H 1.08000 * 119.25617 * 180.25946 * 20 19 17 36 36 H 0.96995 * 111.85104 * 189.44279 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1644 1.2235 -0.3679 5 6 1.5396 2.3396 0.4729 6 7 0.4191 2.2578 1.1586 7 14 2.3089 4.0082 0.1361 8 1 2.3986 4.2250 -1.3302 9 1 1.4696 5.0719 0.7438 10 1 3.6702 4.0541 0.7275 11 6 2.1975 -1.2687 -0.0006 12 1 3.2669 -1.0593 -0.0221 13 6 1.8249 -2.0508 -1.2372 14 6 2.7443 -3.1989 -1.5160 15 6 2.5366 -4.4166 -0.6760 16 6 2.7443 -5.6358 -1.3228 17 6 2.5772 -6.8350 -0.6677 18 35 2.8686 -8.4671 -1.5770 19 6 2.1940 -6.8356 0.6623 20 6 1.9904 -5.6413 1.3089 21 6 2.1627 -4.4113 0.6506 22 7 1.9570 -3.3001 1.4357 23 6 1.8752 -2.0141 1.2447 24 8 1.4939 -1.3519 2.1866 25 1 -0.3633 0.0921 1.0236 26 1 -0.3633 0.8404 -0.5915 27 1 -0.3634 -0.9325 -0.4318 28 1 -0.0074 3.0640 1.4887 29 1 1.8383 -1.3768 -2.0937 30 1 0.8129 -2.4360 -1.1128 31 1 3.7694 -2.8571 -1.3733 32 1 2.6241 -3.4818 -2.5618 33 1 3.0425 -5.6386 -2.3607 34 1 2.0558 -7.7689 1.1879 35 1 1.6956 -5.6472 2.3478 36 1 1.8437 -3.5343 2.3702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599282011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = 34.895137 kcal Electronic energy + Delta-G solvation = -21375.529899 eV Core-core repulsion = 18100.174480 eV Total energy + Delta-G solvation = -3275.355418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.93925 -38.88456 -36.22963 -35.17819 -33.98518 -31.77230 -31.42567 -29.81581 -28.70534 -26.47900 -25.86791 -24.04304 -22.89948 -22.22291 -20.37188 -19.09661 -17.67260 -17.17352 -16.29963 -15.85639 -15.23948 -14.99379 -14.86721 -14.40370 -14.03219 -13.75908 -13.71722 -13.26373 -12.95924 -12.45031 -12.11341 -12.09206 -11.54087 -11.52259 -11.29996 -11.01402 -10.81401 -10.75602 -10.57460 -10.46987 -10.38120 -10.06387 -9.93443 -9.91432 -9.28245 -8.98223 -8.55414 -7.86641 -6.82243 -5.72348 -3.22041 0.94531 1.10499 1.52000 3.02467 3.31721 3.40640 3.43907 3.45032 3.71035 4.45628 4.49074 4.60549 4.98201 5.00906 5.01255 5.19188 5.25107 5.29768 5.49442 5.62410 5.73112 5.80215 5.93907 6.02593 6.05613 6.15846 6.19936 6.38463 6.53722 6.69233 6.73736 6.88665 7.33951 7.71457 7.80708 7.87538 8.32964 8.62432 9.18252 9.79404 10.28073 11.30730 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.002729 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.879730 B =10259.268047 C =10703.995565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.565 5.565 3 C -0.267 4.267 4 H 0.071 0.929 5 C 0.010 3.990 6 N -0.892 5.892 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.164 3.836 12 H 0.094 0.906 13 C -0.130 4.130 14 C -0.075 4.075 15 C -0.112 4.112 16 C -0.055 4.055 17 C -0.127 4.127 18 Br -0.061 7.061 19 C -0.060 4.060 20 C -0.170 4.170 21 C 0.216 3.784 22 N -0.657 5.657 23 C 0.487 3.513 24 O -0.496 6.496 25 H 0.039 0.961 26 H 0.045 0.955 27 H -0.004 1.004 28 H 0.254 0.746 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -22.637 -5.758 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.285 5.285 3 C -0.396 4.396 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.535 5.535 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.051 3.949 12 H 0.111 0.889 13 C -0.170 4.170 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.075 4.075 17 C -0.208 4.208 18 Br 0.024 6.976 19 C -0.080 4.080 20 C -0.192 4.192 21 C 0.116 3.884 22 N -0.296 5.296 23 C 0.273 3.727 24 O -0.368 6.368 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.500 -22.406 -5.788 23.575 hybrid contribution 0.196 0.993 0.665 1.211 sum 4.696 -21.412 -5.124 22.512 Atomic orbital electron populations 1.20841 0.82125 0.95284 1.00126 1.43872 1.01917 0.98903 1.83791 1.19153 0.99115 0.84757 1.36592 0.91129 1.25133 0.97905 0.98709 0.97236 1.70108 1.19355 1.27375 1.36628 0.86310 0.78523 0.83568 0.77913 1.20883 1.21590 1.20844 1.19740 0.98692 0.87595 0.88919 0.88861 1.21025 0.99335 0.96322 1.00298 1.19603 1.01134 0.92023 0.98464 1.19165 1.04413 0.95708 0.92414 1.21126 0.96889 0.89709 0.99811 1.21386 1.11860 0.91434 0.96110 1.96668 1.95839 1.27908 1.77161 1.20660 0.96766 0.98127 0.92462 1.21187 1.06641 0.90572 1.00813 1.17232 0.94264 0.86007 0.90933 1.43172 1.68629 1.05635 1.12188 1.21742 0.77059 0.79941 0.93953 1.90855 1.41803 1.62886 1.41210 0.94275 0.93671 0.98542 0.93598 0.89438 0.92403 0.90594 0.90448 0.84934 0.84847 0.84984 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 7.98 59.85 0.48 4.54 16 2 N -0.56 -14.15 2.27 -177.12 -0.40 -14.56 16 3 C -0.27 -7.30 9.57 -15.06 -0.14 -7.44 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.01 0.29 5.09 -17.43 -0.09 0.21 16 6 N -0.89 -26.59 10.74 55.49 0.60 -25.99 16 7 Si 0.91 21.78 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.16 3.29 2.55 -71.06 -0.18 3.11 16 12 H 0.09 1.84 7.67 -51.93 -0.40 1.44 16 13 C -0.13 -2.07 4.25 -29.37 -0.12 -2.19 16 14 C -0.07 -0.91 5.22 -30.15 -0.16 -1.07 16 15 C -0.11 -1.38 5.69 -104.91 -0.60 -1.98 16 16 C -0.05 -0.59 9.15 -39.30 -0.36 -0.94 16 17 C -0.13 -1.32 6.21 -39.73 -0.25 -1.57 16 18 Br -0.06 -0.57 33.72 -68.01 -2.29 -2.86 16 19 C -0.06 -0.59 9.80 -39.85 -0.39 -0.98 16 20 C -0.17 -1.81 9.51 -39.04 -0.37 -2.18 16 21 C 0.22 2.80 6.64 -84.54 -0.56 2.23 16 22 N -0.66 -10.13 4.78 -11.86 -0.06 -10.19 16 23 C 0.49 9.77 7.03 -13.91 -0.10 9.67 16 24 O -0.50 -12.44 16.13 5.55 0.09 -12.35 16 25 H 0.04 1.12 7.10 -51.93 -0.37 0.75 16 26 H 0.04 1.19 7.36 -51.93 -0.38 0.81 16 27 H 0.00 -0.09 6.64 -51.93 -0.34 -0.43 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 30 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 31 H 0.08 0.90 7.94 -51.93 -0.41 0.48 16 32 H 0.08 0.78 7.65 -51.93 -0.40 0.39 16 33 H 0.13 1.19 7.78 -52.49 -0.41 0.79 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.14 7.70 -52.49 -0.40 0.74 16 36 H 0.38 5.41 7.46 -40.82 -0.30 5.11 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -32.13 313.87 -9.38 -41.52 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.17 Total: 1.54 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.84 Total: 1.40 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.14 Total: -50.73 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.13 -9.38 -41.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599282011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.411 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds