Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36931 * 120.00471 * 2 1 4 4 H 1.07995 * 120.00590 * 203.16262 * 3 2 1 5 5 C 1.38821 * 119.99697 * 23.16099 * 3 2 1 6 6 N 1.31619 * 119.99715 * 13.43917 * 5 3 2 7 7 Si 1.86798 * 119.99895 * 193.43088 * 5 3 2 8 8 H 1.48502 * 109.46817 * 60.00517 * 7 5 3 9 9 H 1.48503 * 109.47052 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47535 * 300.00206 * 7 5 3 11 11 C 1.46501 * 119.99935 * 180.02562 * 2 1 3 12 12 H 1.08998 * 108.91694 * 178.80060 * 11 2 1 13 13 C 1.50987 * 108.99730 * 59.99549 * 11 2 1 14 14 C 1.49703 * 113.46925 * 166.03168 * 13 11 2 15 15 C 1.49379 * 115.78958 * 77.60119 * 14 13 11 16 16 C 1.39571 * 115.51974 * 144.34381 * 15 14 13 17 17 C 1.37661 * 121.49128 * 180.50089 * 16 15 14 18 18 Br 1.89099 * 120.28579 * 180.02562 * 17 16 15 19 19 C 1.38408 * 119.42388 * 0.03215 * 17 16 15 20 20 C 1.37316 * 119.54506 * 359.80241 * 19 17 16 21 21 C 1.37831 * 125.15861 * 324.50237 * 15 14 13 22 22 N 1.37605 * 126.35679 * 357.90443 * 21 15 14 23 23 C 1.30274 * 136.29311 * 9.46867 * 22 21 15 24 24 O 1.21287 * 116.41260 * 169.98886 * 23 22 21 25 25 H 1.09005 * 109.46870 * 275.14253 * 1 2 3 26 26 H 1.09000 * 109.47142 * 35.13920 * 1 2 3 27 27 H 1.08996 * 109.47581 * 155.14988 * 1 2 3 28 28 H 0.96997 * 119.99485 * 180.02562 * 6 5 3 29 29 H 1.08995 * 108.67891 * 45.00174 * 13 11 2 30 30 H 1.08997 * 108.57904 * 286.99370 * 13 11 2 31 31 H 1.08997 * 108.22076 * 315.95415 * 14 13 11 32 32 H 1.09005 * 108.06223 * 199.12069 * 14 13 11 33 33 H 1.07987 * 119.25431 * 0.47892 * 16 15 14 34 34 H 1.08001 * 120.22692 * 179.78436 * 19 17 16 35 35 H 1.08000 * 119.25617 * 180.25946 * 20 19 17 36 36 H 0.96995 * 111.85104 * 189.44279 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1644 1.2235 -0.3679 5 6 1.5396 2.3396 0.4729 6 7 0.4191 2.2578 1.1586 7 14 2.3089 4.0082 0.1361 8 1 2.3986 4.2250 -1.3302 9 1 1.4696 5.0719 0.7438 10 1 3.6702 4.0541 0.7275 11 6 2.1975 -1.2687 -0.0006 12 1 3.2669 -1.0593 -0.0221 13 6 1.8249 -2.0508 -1.2372 14 6 2.7443 -3.1989 -1.5160 15 6 2.5366 -4.4166 -0.6760 16 6 2.7443 -5.6358 -1.3228 17 6 2.5772 -6.8350 -0.6677 18 35 2.8686 -8.4671 -1.5770 19 6 2.1940 -6.8356 0.6623 20 6 1.9904 -5.6413 1.3089 21 6 2.1627 -4.4113 0.6506 22 7 1.9570 -3.3001 1.4357 23 6 1.8752 -2.0141 1.2447 24 8 1.4939 -1.3519 2.1866 25 1 -0.3633 0.0921 1.0236 26 1 -0.3633 0.8404 -0.5915 27 1 -0.3634 -0.9325 -0.4318 28 1 -0.0074 3.0640 1.4887 29 1 1.8383 -1.3768 -2.0937 30 1 0.8129 -2.4360 -1.1128 31 1 3.7694 -2.8571 -1.3733 32 1 2.6241 -3.4818 -2.5618 33 1 3.0425 -5.6386 -2.3607 34 1 2.0558 -7.7689 1.1879 35 1 1.6956 -5.6472 2.3478 36 1 1.8437 -3.5343 2.3702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599282011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = 15.295400 kcal Electronic energy + Delta-G solvation = -21376.379807 eV Core-core repulsion = 18100.174480 eV Total energy + Delta-G solvation = -3276.205327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.22655 -40.09397 -37.86378 -36.42621 -35.46604 -33.33975 -32.45457 -31.21396 -29.74313 -28.17708 -27.65328 -25.22573 -24.09115 -23.76113 -21.65686 -20.33604 -19.05069 -18.85969 -17.85876 -17.09655 -16.71245 -16.36131 -15.92812 -15.83571 -15.46478 -15.34159 -14.80754 -14.56905 -14.47855 -13.76807 -13.57947 -13.37674 -13.06295 -12.76588 -12.58936 -12.50127 -12.44699 -12.37978 -12.25599 -11.99047 -11.84538 -11.74266 -11.18260 -11.01888 -10.95265 -10.60751 -9.83005 -8.93827 -8.84214 -7.81958 -5.34716 -0.02276 0.25981 0.70684 1.46734 1.49775 1.56507 1.67368 2.08042 2.50728 2.66550 3.30473 3.51963 3.56350 3.67787 3.79989 4.01292 4.03026 4.21819 4.26948 4.49457 4.50297 4.75304 4.75767 4.89798 4.98455 5.04426 5.11800 5.19472 5.21678 5.25655 5.35903 5.59760 5.67484 5.70987 5.72617 6.25144 6.52160 7.05643 7.16154 7.79631 8.24053 9.20351 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.002729 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.879730 B =10259.268047 C =10703.995565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.583 5.583 3 C -0.274 4.274 4 H 0.081 0.919 5 C -0.052 4.052 6 N -0.933 5.933 7 Si 0.976 3.024 8 H -0.269 1.269 9 H -0.298 1.298 10 H -0.276 1.276 11 C 0.157 3.843 12 H 0.095 0.905 13 C -0.114 4.114 14 C -0.072 4.072 15 C -0.115 4.115 16 C -0.055 4.055 17 C -0.126 4.126 18 Br -0.046 7.046 19 C -0.059 4.059 20 C -0.161 4.161 21 C 0.181 3.819 22 N -0.645 5.645 23 C 0.495 3.505 24 O -0.562 6.562 25 H -0.004 1.004 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.247 0.753 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -25.347 -7.439 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.303 5.303 3 C -0.403 4.403 4 H 0.099 0.901 5 C -0.247 4.247 6 N -0.578 5.578 7 Si 0.803 3.197 8 H -0.195 1.195 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.046 3.954 12 H 0.113 0.887 13 C -0.153 4.153 14 C -0.110 4.110 15 C -0.119 4.119 16 C -0.076 4.076 17 C -0.206 4.206 18 Br 0.039 6.961 19 C -0.079 4.079 20 C -0.182 4.182 21 C 0.084 3.916 22 N -0.283 5.283 23 C 0.282 3.718 24 O -0.439 6.439 25 H 0.014 0.986 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.032 -25.236 -7.523 27.015 hybrid contribution -0.186 1.505 1.122 1.887 sum 5.846 -23.730 -6.402 25.264 Atomic orbital electron populations 1.20440 0.82897 0.95617 0.97271 1.43982 1.01788 1.00237 1.84331 1.19611 0.99415 0.85955 1.35354 0.90106 1.25990 0.98658 1.02467 0.97631 1.70324 1.21206 1.27624 1.38637 0.85232 0.77485 0.78813 0.78186 1.19496 1.22415 1.20150 1.19967 0.98246 0.86523 0.90673 0.88705 1.20825 0.99723 0.97091 0.97703 1.19587 1.00403 0.90688 1.00280 1.19266 1.04221 0.96354 0.92107 1.21285 0.96511 0.89043 1.00711 1.21647 1.10426 0.92053 0.96458 1.96709 1.95694 1.26842 1.76873 1.20959 0.95821 0.98686 0.92410 1.21378 1.05294 0.89842 1.01684 1.17499 0.96951 0.85572 0.91600 1.42613 1.67746 1.04761 1.13172 1.21276 0.76425 0.81233 0.92881 1.90844 1.45340 1.64820 1.42882 0.98556 0.95866 0.95713 0.94435 0.89516 0.93265 0.89774 0.87334 0.82940 0.82474 0.83175 0.77328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.64 7.98 127.77 1.02 10.66 16 2 N -0.58 -29.94 2.27 -714.29 -1.62 -31.56 16 3 C -0.27 -15.26 9.57 84.04 0.80 -14.46 16 4 H 0.08 4.22 7.81 -2.91 -0.02 4.20 16 5 C -0.05 -2.98 5.09 84.86 0.43 -2.55 16 6 N -0.93 -58.25 10.74 21.65 0.23 -58.01 16 7 Si 0.98 45.79 29.57 68.60 2.03 47.82 16 8 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 C 0.16 6.35 2.55 42.96 0.11 6.46 16 12 H 0.10 3.74 7.67 -2.39 -0.02 3.72 16 13 C -0.11 -3.47 4.25 28.88 0.12 -3.35 16 14 C -0.07 -1.56 5.22 28.38 0.15 -1.41 16 15 C -0.12 -2.49 5.69 -20.05 -0.11 -2.61 16 16 C -0.06 -0.97 9.15 22.46 0.21 -0.76 16 17 C -0.13 -2.13 6.21 22.17 0.14 -2.00 16 18 Br -0.05 -0.70 33.72 -20.37 -0.69 -1.39 16 19 C -0.06 -0.94 9.80 22.09 0.22 -0.72 16 20 C -0.16 -2.95 9.51 22.62 0.22 -2.74 16 21 C 0.18 4.32 6.64 38.71 0.26 4.58 16 22 N -0.64 -19.53 4.78 -312.27 -1.49 -21.02 16 23 C 0.49 20.20 7.03 87.71 0.62 20.82 16 24 O -0.56 -29.49 16.13 -3.05 -0.05 -29.54 16 25 H 0.00 -0.24 7.10 -2.38 -0.02 -0.26 16 26 H 0.02 1.27 7.36 -2.39 -0.02 1.25 16 27 H 0.02 1.12 6.64 -2.39 -0.02 1.10 16 28 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.09 2.67 8.13 -2.39 -0.02 2.65 16 30 H 0.05 1.58 7.02 -2.39 -0.02 1.56 16 31 H 0.08 1.73 7.94 -2.39 -0.02 1.71 16 32 H 0.11 1.74 7.65 -2.38 -0.02 1.72 16 33 H 0.15 2.05 7.78 -2.92 -0.02 2.03 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.15 2.17 7.70 -2.91 -0.02 2.15 16 36 H 0.39 10.96 7.46 -92.71 -0.69 10.27 16 Total: -1.00 -73.27 313.87 3.01 -70.26 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.43 Total: 11.52 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 4.17 Total: 11.92 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -2.88 Total: -110.60 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.69 Total: -1.39 kcal Total: -73.27 3.01 -70.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599282011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.555 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds