Wall clock time and date at job start Tue Mar 31 2020 20:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27566 * 126.42015 * 2 1 4 4 N 1.39150 * 113.16601 * 180.02562 * 3 2 1 5 5 C 1.39140 * 124.44199 * 180.02562 * 4 3 2 6 6 N 1.32399 * 119.19005 * 179.70926 * 5 4 3 7 7 C 1.32271 * 120.75637 * 179.75924 * 6 5 4 8 8 C 1.38702 * 119.17373 * 0.50284 * 7 6 5 9 9 Br 1.89099 * 120.74238 * 179.77061 * 8 7 6 10 10 C 1.38704 * 118.51482 * 359.75080 * 8 7 6 11 11 N 1.32272 * 119.16978 * 0.02562 * 10 8 7 12 12 C 1.35319 * 111.15916 * 359.91493 * 4 3 2 13 13 O 1.21280 * 127.67667 * 180.10763 * 12 4 3 14 14 C 1.51439 * 126.41146 * 180.02562 * 2 1 3 15 15 H 1.08996 * 110.60944 * 298.64895 * 14 2 1 16 16 C 1.53006 * 110.60837 * 61.46599 * 14 2 1 17 17 C 1.50698 * 109.47184 * 182.85027 * 16 14 2 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99809 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99912 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47123 * 90.00333 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00455 * 21 19 17 24 24 H 1.48493 * 109.47121 * 329.99876 * 21 19 17 25 25 H 1.08995 * 109.46778 * 269.97773 * 1 2 3 26 26 H 1.08999 * 109.46463 * 29.96747 * 1 2 3 27 27 H 1.08989 * 109.47509 * 149.96755 * 1 2 3 28 28 H 1.08002 * 120.41301 * 180.25493 * 7 6 5 29 29 H 1.07996 * 120.41729 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.47002 * 302.84431 * 16 14 2 31 31 H 1.08993 * 109.46955 * 62.84868 * 16 14 2 32 32 H 0.97004 * 119.99097 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0265 0.0000 4 7 3.6189 0.7075 -0.0006 5 6 4.6479 1.6440 -0.0002 6 7 5.9034 1.2237 0.0051 7 6 6.9057 2.0869 0.0008 8 6 6.6277 3.4458 0.0014 9 35 8.0262 4.7186 0.0019 10 6 5.3009 3.8502 0.0011 11 7 4.3475 2.9334 0.0008 12 6 3.8050 -0.6329 0.0009 13 8 4.8577 -1.2351 0.0027 14 6 2.4060 -1.2187 -0.0005 15 1 2.2401 -1.8182 0.8945 16 6 2.1751 -2.0577 -1.2591 17 6 3.0297 -3.2975 -1.2002 18 1 3.6736 -3.4696 -0.3503 19 6 2.9906 -4.2114 -2.2317 20 7 3.7369 -5.2932 -2.1805 21 14 1.8776 -3.9133 -3.7020 22 1 2.6192 -3.1498 -4.7375 23 1 1.4416 -5.2164 -4.2651 24 1 0.6871 -3.1367 -3.2722 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3632 0.8903 -0.5133 27 1 -0.3634 -0.8896 -0.5143 28 1 7.9278 1.7380 0.0010 29 1 5.0494 4.9005 0.0011 30 1 1.1247 -2.3430 -1.3179 31 1 2.4428 -1.4733 -2.1394 32 1 3.7090 -5.9363 -2.9062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601933654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:17 Heat of formation + Delta-G solvation = 92.473879 kcal Electronic energy + Delta-G solvation = -20590.999470 eV Core-core repulsion = 17214.600510 eV Total energy + Delta-G solvation = -3376.398960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72744 -40.61280 -37.18976 -34.90257 -34.03267 -33.23975 -32.33475 -30.91534 -29.94596 -28.05087 -26.71944 -25.04182 -23.86624 -22.14622 -20.35457 -19.97988 -18.24433 -17.62178 -16.71016 -16.31880 -16.00387 -15.07197 -14.98061 -14.67567 -14.41624 -14.02438 -13.83243 -13.50727 -13.38956 -12.73034 -12.44040 -12.26827 -12.04168 -11.70774 -11.49394 -11.36109 -11.15422 -11.06541 -10.86321 -10.66736 -10.18345 -9.91298 -9.73959 -9.59658 -9.35443 -9.00719 -8.62051 -8.37242 -6.10211 -4.11019 0.42965 0.85020 1.18296 1.83995 1.96674 2.77911 3.23790 3.30020 3.32129 3.59360 3.68652 4.11367 4.20604 4.22519 4.35831 4.46456 4.59274 5.06732 5.22873 5.34229 5.48391 5.52519 5.64624 5.69762 5.77027 6.04495 6.20444 6.37664 6.76368 6.78792 6.90173 7.42286 7.55785 8.04844 8.14422 8.41444 8.98356 9.47799 11.02733 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003091 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.550650 B = 9055.922768 C = 9905.440329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.118 3.882 3 N -0.233 5.233 4 N -0.408 5.408 5 C 0.586 3.414 6 N -0.512 5.512 7 C 0.221 3.779 8 C -0.251 4.251 9 Br -0.022 7.022 10 C 0.213 3.787 11 N -0.515 5.515 12 C 0.510 3.490 13 O -0.409 6.409 14 C -0.118 4.118 15 H 0.138 0.862 16 C 0.017 3.983 17 C -0.525 4.525 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.872 3.128 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.264 1.264 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.043 0.957 31 H 0.015 0.985 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 21.343 5.618 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.039 5.039 4 N -0.223 5.223 5 C 0.233 3.767 6 N -0.232 5.232 7 C 0.051 3.949 8 C -0.337 4.337 9 Br 0.061 6.939 10 C 0.043 3.957 11 N -0.234 5.234 12 C 0.295 3.705 13 O -0.268 6.268 14 C -0.142 4.142 15 H 0.156 0.844 16 C -0.021 4.021 17 C -0.563 4.563 18 H 0.102 0.898 19 C -0.129 4.129 20 N -0.530 5.530 21 Si 0.699 3.301 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.188 1.188 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.200 0.800 29 H 0.198 0.802 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.966 21.482 5.531 22.270 hybrid contribution 0.119 -0.318 -0.917 0.978 sum 2.085 21.164 4.614 21.761 Atomic orbital electron populations 1.20423 0.84223 1.04850 1.04126 1.25857 0.97863 0.91662 0.92143 1.75019 0.86137 1.25695 1.17003 1.47194 1.02485 1.05173 1.67416 1.18941 0.84673 0.84897 0.88156 1.68206 0.98231 1.38650 1.18094 1.23204 0.98835 0.86588 0.86300 1.23528 0.96054 0.96503 1.17638 1.96723 1.45121 1.54152 1.97941 1.23168 0.85887 0.99751 0.86941 1.68140 1.36748 1.00270 1.18255 1.21816 0.92706 0.80214 0.75725 1.90826 1.30908 1.63808 1.41302 1.21900 0.89650 0.95994 1.06648 0.84441 1.19425 0.99048 0.94902 0.88766 1.21004 1.24810 1.02565 1.07875 0.89815 1.24941 0.95229 0.94900 0.97798 1.69903 1.39385 1.10824 1.32937 0.86906 0.81694 0.77901 0.83564 1.20340 1.21006 1.18822 0.89035 0.89752 0.88663 0.80038 0.80231 0.93922 0.96651 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.49 36.01 0.38 -0.40 16 2 C 0.12 1.80 6.93 -78.72 -0.55 1.26 16 3 N -0.23 -4.05 11.74 35.53 0.42 -3.63 16 4 N -0.41 -8.09 3.71 -12.58 -0.05 -8.14 16 5 C 0.59 10.89 8.39 -321.98 -2.70 8.19 16 6 N -0.51 -9.31 8.93 -13.76 -0.12 -9.43 16 7 C 0.22 2.97 11.08 -17.19 -0.19 2.78 16 8 C -0.25 -2.87 6.27 -39.24 -0.25 -3.11 16 9 Br -0.02 -0.20 33.76 -68.01 -2.30 -2.49 16 10 C 0.21 2.54 11.08 -17.19 -0.19 2.35 16 11 N -0.51 -8.22 10.16 -13.76 -0.14 -8.36 16 12 C 0.51 11.17 7.52 -10.26 -0.08 11.10 16 13 O -0.41 -10.38 15.74 5.56 0.09 -10.29 16 14 C -0.12 -2.24 2.98 -92.08 -0.27 -2.52 16 15 H 0.14 2.42 8.14 -51.93 -0.42 1.99 16 16 C 0.02 0.38 3.56 -27.88 -0.10 0.28 16 17 C -0.52 -14.52 8.94 -34.44 -0.31 -14.82 16 18 H 0.08 2.57 7.48 -52.48 -0.39 2.18 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 20 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 21 Si 0.87 20.82 27.47 -169.99 -4.67 16.16 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.91 7.49 -51.94 -0.39 0.52 16 28 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.04 0.86 6.56 -51.93 -0.34 0.52 16 31 H 0.02 0.36 7.56 -51.93 -0.39 -0.04 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -34.94 306.88 -8.52 -43.46 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -2.80 Total: -2.50 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -4.35 Total: 7.10 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.88 Total: -56.06 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.30 Total: -2.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.94 -8.52 -43.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601933654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.938 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds