Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27566 * 126.42015 * 2 1 4 4 N 1.39150 * 113.16601 * 180.02562 * 3 2 1 5 5 C 1.39140 * 124.44199 * 180.02562 * 4 3 2 6 6 N 1.32399 * 119.19005 * 179.70926 * 5 4 3 7 7 C 1.32271 * 120.75637 * 179.75924 * 6 5 4 8 8 C 1.38702 * 119.17373 * 0.50284 * 7 6 5 9 9 Br 1.89099 * 120.74238 * 179.77061 * 8 7 6 10 10 C 1.38704 * 118.51482 * 359.75080 * 8 7 6 11 11 N 1.32272 * 119.16978 * 0.02562 * 10 8 7 12 12 C 1.35319 * 111.15916 * 359.91493 * 4 3 2 13 13 O 1.21280 * 127.67667 * 180.10763 * 12 4 3 14 14 C 1.51439 * 126.41146 * 180.02562 * 2 1 3 15 15 H 1.08996 * 110.60944 * 298.64895 * 14 2 1 16 16 C 1.53006 * 110.60837 * 61.46599 * 14 2 1 17 17 C 1.50698 * 109.47184 * 182.85027 * 16 14 2 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99809 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99912 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47123 * 90.00333 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00455 * 21 19 17 24 24 H 1.48493 * 109.47121 * 329.99876 * 21 19 17 25 25 H 1.08995 * 109.46778 * 269.97773 * 1 2 3 26 26 H 1.08999 * 109.46463 * 29.96747 * 1 2 3 27 27 H 1.08989 * 109.47509 * 149.96755 * 1 2 3 28 28 H 1.08002 * 120.41301 * 180.25493 * 7 6 5 29 29 H 1.07996 * 120.41729 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.47002 * 302.84431 * 16 14 2 31 31 H 1.08993 * 109.46955 * 62.84868 * 16 14 2 32 32 H 0.97004 * 119.99097 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0265 0.0000 4 7 3.6189 0.7075 -0.0006 5 6 4.6479 1.6440 -0.0002 6 7 5.9034 1.2237 0.0051 7 6 6.9057 2.0869 0.0008 8 6 6.6277 3.4458 0.0014 9 35 8.0262 4.7186 0.0019 10 6 5.3009 3.8502 0.0011 11 7 4.3475 2.9334 0.0008 12 6 3.8050 -0.6329 0.0009 13 8 4.8577 -1.2351 0.0027 14 6 2.4060 -1.2187 -0.0005 15 1 2.2401 -1.8182 0.8945 16 6 2.1751 -2.0577 -1.2591 17 6 3.0297 -3.2975 -1.2002 18 1 3.6736 -3.4696 -0.3503 19 6 2.9906 -4.2114 -2.2317 20 7 3.7369 -5.2932 -2.1805 21 14 1.8776 -3.9133 -3.7020 22 1 2.6192 -3.1498 -4.7375 23 1 1.4416 -5.2164 -4.2651 24 1 0.6871 -3.1367 -3.2722 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3632 0.8903 -0.5133 27 1 -0.3634 -0.8896 -0.5143 28 1 7.9278 1.7380 0.0010 29 1 5.0494 4.9005 0.0011 30 1 1.1247 -2.3430 -1.3179 31 1 2.4428 -1.4733 -2.1394 32 1 3.7090 -5.9363 -2.9062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601933654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = 69.367821 kcal Electronic energy + Delta-G solvation = -20592.001424 eV Core-core repulsion = 17214.600510 eV Total energy + Delta-G solvation = -3377.400914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.05088 -41.87102 -38.80436 -36.31152 -35.19266 -34.99314 -33.57152 -32.63221 -30.90940 -29.14432 -28.43085 -26.19241 -25.21347 -23.79601 -21.87943 -21.25091 -19.74173 -18.90994 -18.54655 -17.79231 -17.09665 -16.47967 -16.42183 -16.20098 -15.83561 -15.60118 -14.83774 -14.75279 -14.62428 -14.46123 -13.93583 -13.50644 -13.33464 -13.22060 -12.86572 -12.56485 -12.44590 -12.36123 -12.32150 -11.85790 -11.72024 -11.64895 -11.54951 -10.85542 -10.83442 -10.74364 -10.40081 -9.61677 -8.27314 -6.33874 -0.72176 -0.20516 0.21409 0.50970 0.69947 1.34940 1.36855 1.38756 1.49175 2.35599 2.40971 2.46128 2.83421 3.01798 3.07202 3.16084 3.28655 3.57573 3.78384 4.08745 4.32081 4.40210 4.52376 4.70436 4.89300 4.95233 5.00125 5.09268 5.11228 5.39358 5.53942 5.63503 6.18838 6.23909 6.56755 6.76024 6.82954 7.28629 8.89906 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003091 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.550650 B = 9055.922768 C = 9905.440329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.145 3.855 3 N -0.248 5.248 4 N -0.417 5.417 5 C 0.557 3.443 6 N -0.555 5.555 7 C 0.209 3.791 8 C -0.234 4.234 9 Br 0.015 6.985 10 C 0.214 3.786 11 N -0.523 5.523 12 C 0.497 3.503 13 O -0.468 6.468 14 C -0.122 4.122 15 H 0.148 0.852 16 C 0.024 3.976 17 C -0.529 4.529 18 H 0.032 0.968 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.944 3.056 22 H -0.284 1.284 23 H -0.281 1.281 24 H -0.217 1.217 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.204 0.796 29 H 0.222 0.778 30 H 0.080 0.920 31 H 0.008 0.992 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 24.478 5.036 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 N -0.054 5.054 4 N -0.230 5.230 5 C 0.204 3.796 6 N -0.276 5.276 7 C 0.041 3.959 8 C -0.319 4.319 9 Br 0.098 6.902 10 C 0.045 3.955 11 N -0.243 5.243 12 C 0.284 3.716 13 O -0.332 6.332 14 C -0.146 4.146 15 H 0.165 0.835 16 C -0.014 4.014 17 C -0.567 4.567 18 H 0.050 0.950 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.767 3.233 22 H -0.210 1.210 23 H -0.207 1.207 24 H -0.139 1.139 25 H 0.141 0.859 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.221 0.779 29 H 0.239 0.761 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.480 24.707 4.974 25.208 hybrid contribution 1.081 -1.135 -0.635 1.691 sum 0.601 23.572 4.339 23.976 Atomic orbital electron populations 1.20789 0.79709 1.06451 1.06615 1.26565 0.99644 0.88613 0.89914 1.75071 0.85054 1.26113 1.19150 1.47196 1.03723 1.04724 1.67383 1.19064 0.84627 0.85725 0.90218 1.68140 0.99154 1.40894 1.19441 1.23656 0.98867 0.87349 0.86017 1.23680 0.97132 0.96420 1.14686 1.96780 1.43452 1.52263 1.97694 1.23905 0.85504 1.00733 0.85312 1.68158 1.38057 0.99538 1.18555 1.22323 0.93107 0.81316 0.74815 1.90772 1.32879 1.65304 1.44260 1.21858 0.89502 0.97495 1.05749 0.83510 1.19296 0.99636 0.92602 0.89881 1.21267 1.24455 1.04747 1.06185 0.94980 1.26015 0.97209 0.94397 1.01578 1.70094 1.42097 1.12462 1.34425 0.85765 0.80759 0.78349 0.78458 1.20993 1.20700 1.13904 0.85901 0.87708 0.87298 0.77927 0.76132 0.90222 0.97391 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.49 71.24 0.75 -0.44 16 2 C 0.15 4.11 6.93 46.83 0.32 4.43 16 3 N -0.25 -8.35 11.74 -40.84 -0.48 -8.83 16 4 N -0.42 -16.88 3.71 -311.79 -1.16 -18.04 16 5 C 0.56 21.18 8.39 261.20 2.19 23.37 16 6 N -0.56 -21.07 8.93 -197.45 -1.76 -22.83 16 7 C 0.21 5.64 11.08 84.74 0.94 6.58 16 8 C -0.23 -4.96 6.27 22.49 0.14 -4.82 16 9 Br 0.01 0.22 33.76 -20.37 -0.69 -0.47 16 10 C 0.21 4.69 11.08 84.74 0.94 5.63 16 11 N -0.52 -16.33 10.16 -197.46 -2.01 -18.34 16 12 C 0.50 22.87 7.52 87.88 0.66 23.53 16 13 O -0.47 -25.69 15.74 -3.03 -0.05 -25.74 16 14 C -0.12 -4.64 2.98 -11.74 -0.03 -4.67 16 15 H 0.15 5.22 8.14 -2.39 -0.02 5.20 16 16 C 0.02 1.05 3.56 29.85 0.11 1.16 16 17 C -0.53 -30.26 8.94 25.60 0.23 -30.04 16 18 H 0.03 2.11 7.48 -2.91 -0.02 2.09 16 19 C 0.00 0.28 5.47 84.65 0.46 0.75 16 20 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 21 Si 0.94 42.45 27.47 68.60 1.88 44.33 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.22 -8.08 6.54 99.48 0.65 -7.42 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.11 1.46 7.49 -2.39 -0.02 1.44 16 28 H 0.20 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.22 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.08 2.90 6.56 -2.39 -0.02 2.89 16 31 H 0.01 0.35 7.56 -2.39 -0.02 0.34 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -83.68 306.88 3.87 -79.82 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.12 Total: 5.03 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 6.71 Total: 25.47 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.10 Total: -128.44 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.47 kcal Total: -83.68 3.87 -79.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601933654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.183 kcal (2) G-P(sol) polarization free energy of solvation -83.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds