Wall clock time and date at job start Tue Mar 31 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47167 * 2 1 4 4 C 1.46904 * 111.00132 * 298.48579 * 3 2 1 5 5 C 1.50699 * 109.47021 * 293.09092 * 4 3 2 6 6 H 1.08000 * 119.99778 * 354.95348 * 5 4 3 7 7 C 1.37877 * 120.00000 * 174.95243 * 5 4 3 8 8 N 1.31511 * 119.99818 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99700 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46756 * 90.00429 * 9 7 5 11 11 H 1.48500 * 109.46788 * 209.99947 * 9 7 5 12 12 H 1.48490 * 109.47221 * 330.00195 * 9 7 5 13 13 C 1.46901 * 111.00141 * 62.44049 * 3 2 1 14 14 C 1.50693 * 109.47224 * 66.04253 * 13 3 2 15 15 C 1.38649 * 126.18151 * 260.08004 * 14 13 3 16 16 N 1.31424 * 108.99322 * 180.30126 * 15 14 13 17 17 N 1.39940 * 108.83494 * 359.77285 * 16 15 14 18 18 C 1.36550 * 132.56275 * 179.97438 * 17 16 15 19 19 C 1.35599 * 119.11544 * 180.02562 * 18 17 16 20 20 Br 1.89094 * 120.28390 * 180.02562 * 19 18 17 21 21 C 1.40317 * 119.42999 * 359.97438 * 19 18 17 22 22 N 1.31214 * 120.27015 * 0.02562 * 21 19 18 23 23 C 1.33968 * 120.83179 * 359.97438 * 22 21 19 24 24 H 1.08995 * 109.46720 * 59.90163 * 1 2 3 25 25 H 1.09003 * 109.46770 * 179.89990 * 1 2 3 26 26 H 1.08995 * 109.47161 * 299.89908 * 1 2 3 27 27 H 1.08992 * 109.47140 * 239.99588 * 2 1 3 28 28 H 1.09002 * 109.46651 * 119.99809 * 2 1 3 29 29 H 1.08998 * 109.46838 * 53.08796 * 4 3 2 30 30 H 1.08993 * 109.47080 * 173.08991 * 4 3 2 31 31 H 0.97000 * 119.99501 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47011 * 306.04421 * 13 3 2 33 33 H 1.09001 * 109.47436 * 186.04982 * 13 3 2 34 34 H 1.07999 * 125.50300 * 0.09846 * 15 14 13 35 35 H 1.08001 * 120.44147 * 0.05544 * 18 17 16 36 36 H 1.07998 * 119.86206 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5785 2.0994 -1.2054 5 6 2.2475 1.5020 -2.4165 6 1 2.9927 0.7297 -2.2958 7 6 1.9082 1.9414 -3.6785 8 7 1.0011 2.8823 -3.8254 9 14 2.7381 1.2014 -5.1796 10 1 1.9575 0.0283 -5.6487 11 1 2.8025 2.2174 -6.2607 12 1 4.1134 0.7703 -4.8227 13 6 1.5970 2.0928 1.2158 14 6 2.2679 1.4753 2.4156 15 6 1.6980 0.5676 3.2952 16 7 2.5791 0.2567 4.2194 17 7 3.7651 0.9549 3.9661 18 6 4.9694 0.9935 4.6085 19 6 5.9548 1.7844 4.1162 20 35 7.6355 1.8624 4.9792 21 6 5.7169 2.5435 2.9604 22 7 4.5506 2.4887 2.3616 23 6 3.5696 1.7111 2.8387 24 1 -0.3632 0.5153 -0.8891 25 1 -0.3633 -1.0277 -0.0018 26 1 -0.3633 0.5122 0.8908 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4970 2.0087 -1.3060 30 1 1.8488 3.1520 -1.1232 31 1 0.7627 3.1917 -4.7133 32 1 0.5152 2.0146 1.3242 33 1 1.8797 3.1429 1.1418 34 1 0.6914 0.1813 3.2329 35 1 5.1351 0.4017 5.4966 36 1 6.4966 3.1760 2.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602436990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:17 Heat of formation + Delta-G solvation = 134.979069 kcal Electronic energy + Delta-G solvation = -20944.026145 eV Core-core repulsion = 17705.303443 eV Total energy + Delta-G solvation = -3238.722702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41251 -38.39777 -37.03791 -34.33411 -32.70861 -32.37430 -30.56480 -29.58559 -29.07108 -26.76271 -25.02636 -24.62232 -23.22788 -22.66713 -20.96895 -19.26890 -18.23325 -17.33310 -16.30456 -16.22195 -16.02999 -14.92874 -14.79867 -14.50667 -14.02358 -13.93144 -13.38334 -13.07901 -13.03832 -12.78574 -12.28282 -11.91354 -11.79988 -11.45696 -11.19333 -11.04584 -10.98637 -10.93372 -10.63999 -10.59688 -10.42845 -10.02024 -9.88681 -9.68094 -9.41382 -9.14941 -8.37069 -7.81542 -7.04920 -5.96164 -3.96253 0.30739 0.59872 0.87080 2.05347 2.49757 3.27604 3.35233 3.41540 3.46577 3.81475 3.92889 4.03850 4.48767 4.65034 5.00233 5.03862 5.12033 5.39142 5.41021 5.58057 5.78995 5.84408 5.98771 6.04226 6.18503 6.25673 6.29895 6.49644 6.55428 6.76465 6.96625 7.29158 7.41049 7.50862 7.55898 7.89193 8.19529 8.30720 8.65134 9.11930 9.67370 11.14417 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.003096 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.253504 B = 9040.433122 C =10308.115365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.130 3.870 14 C -0.181 4.181 15 C 0.097 3.903 16 N -0.309 5.309 17 N -0.318 5.318 18 C 0.200 3.800 19 C -0.207 4.207 20 Br -0.004 7.004 21 C 0.190 3.810 22 N -0.416 5.416 23 C 0.261 3.739 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.003 0.997 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.078 -2.462 21.293 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.065 4.065 3 N -0.250 5.250 4 C 0.065 3.935 5 C -0.539 4.539 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.001 3.999 14 C -0.194 4.194 15 C -0.082 4.082 16 N -0.133 5.133 17 N -0.090 5.090 18 C 0.062 3.938 19 C -0.294 4.294 20 Br 0.079 6.921 21 C 0.001 3.999 22 N -0.125 5.125 23 C 0.036 3.964 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.214 0.786 35 H 0.199 0.801 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.792 -2.656 21.701 24.381 hybrid contribution -0.747 -0.436 -1.027 1.343 sum 10.045 -3.092 20.674 23.192 Atomic orbital electron populations 1.22396 0.99485 1.00849 1.02026 1.21911 0.91932 0.91758 1.00923 1.62344 1.59254 1.01659 1.01790 1.19777 0.94530 0.93733 0.85461 1.21143 1.21781 1.20916 0.90032 0.92103 1.24955 0.95350 0.95303 0.98955 1.69955 1.32108 1.29111 1.22826 0.86558 0.79970 0.78715 0.82538 1.20858 1.21325 1.19863 1.20300 0.95285 0.97555 0.86746 1.19885 0.91290 1.05832 1.02349 1.23870 0.99281 0.94150 0.90864 1.77882 0.89779 1.20300 1.25339 1.47127 1.10161 1.31362 1.20323 1.21753 0.80840 0.94903 0.96289 1.22235 0.95387 1.08311 1.03448 1.96786 1.19227 1.98259 1.77792 1.23400 0.94325 0.93629 0.88513 1.68387 0.99374 1.17115 1.27613 1.20446 0.95828 0.93179 0.86951 0.91140 0.93561 0.93723 0.90407 0.93538 0.97910 0.95636 0.93060 0.94205 0.90438 0.78560 0.80075 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.26 37.16 0.34 -2.96 16 2 C 0.06 1.24 5.70 -3.82 -0.02 1.22 16 3 N -0.53 -11.41 4.69 -237.52 -1.11 -12.53 16 4 C 0.19 4.89 4.52 -4.97 -0.02 4.87 16 5 C -0.50 -14.08 8.40 -34.44 -0.29 -14.36 16 6 H 0.06 1.73 7.36 -52.49 -0.39 1.34 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.13 2.39 5.26 -4.98 -0.03 2.37 16 14 C -0.18 -2.98 4.76 -104.23 -0.50 -3.48 16 15 C 0.10 1.36 11.16 -17.57 -0.20 1.16 16 16 N -0.31 -4.48 12.66 30.47 0.39 -4.09 16 17 N -0.32 -4.52 3.90 -12.17 -0.05 -4.57 16 18 C 0.20 2.15 11.04 -16.39 -0.18 1.97 16 19 C -0.21 -2.07 6.21 -39.74 -0.25 -2.31 16 20 Br 0.00 -0.03 33.72 -68.01 -2.29 -2.32 16 21 C 0.19 2.23 11.04 -17.03 -0.19 2.04 16 22 N -0.42 -6.66 10.48 -12.19 -0.13 -6.78 16 23 C 0.26 4.28 7.86 -155.53 -1.22 3.06 16 24 H 0.07 1.45 6.29 -51.93 -0.33 1.12 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 27 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 28 H 0.05 0.84 6.64 -51.93 -0.35 0.49 16 29 H 0.00 0.09 6.01 -51.93 -0.31 -0.23 16 30 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 0.68 6.08 -51.93 -0.32 0.36 16 33 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 34 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -32.20 322.42 -9.29 -41.49 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.03 Total: -1.95 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.64 Total: -4.96 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.17 Total: -53.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.29 Total: -2.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.20 -9.29 -41.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.471 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds