Wall clock time and date at job start Tue Mar 31 2020 21:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47167 * 2 1 4 4 C 1.46904 * 111.00132 * 298.48579 * 3 2 1 5 5 C 1.50699 * 109.47021 * 293.09092 * 4 3 2 6 6 H 1.08000 * 119.99778 * 354.95348 * 5 4 3 7 7 C 1.37877 * 120.00000 * 174.95243 * 5 4 3 8 8 N 1.31511 * 119.99818 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99700 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46756 * 90.00429 * 9 7 5 11 11 H 1.48500 * 109.46788 * 209.99947 * 9 7 5 12 12 H 1.48490 * 109.47221 * 330.00195 * 9 7 5 13 13 C 1.46901 * 111.00141 * 62.44049 * 3 2 1 14 14 C 1.50693 * 109.47224 * 66.04253 * 13 3 2 15 15 C 1.38649 * 126.18151 * 260.08004 * 14 13 3 16 16 N 1.31424 * 108.99322 * 180.30126 * 15 14 13 17 17 N 1.39940 * 108.83494 * 359.77285 * 16 15 14 18 18 C 1.36550 * 132.56275 * 179.97438 * 17 16 15 19 19 C 1.35599 * 119.11544 * 180.02562 * 18 17 16 20 20 Br 1.89094 * 120.28390 * 180.02562 * 19 18 17 21 21 C 1.40317 * 119.42999 * 359.97438 * 19 18 17 22 22 N 1.31214 * 120.27015 * 0.02562 * 21 19 18 23 23 C 1.33968 * 120.83179 * 359.97438 * 22 21 19 24 24 H 1.08995 * 109.46720 * 59.90163 * 1 2 3 25 25 H 1.09003 * 109.46770 * 179.89990 * 1 2 3 26 26 H 1.08995 * 109.47161 * 299.89908 * 1 2 3 27 27 H 1.08992 * 109.47140 * 239.99588 * 2 1 3 28 28 H 1.09002 * 109.46651 * 119.99809 * 2 1 3 29 29 H 1.08998 * 109.46838 * 53.08796 * 4 3 2 30 30 H 1.08993 * 109.47080 * 173.08991 * 4 3 2 31 31 H 0.97000 * 119.99501 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47011 * 306.04421 * 13 3 2 33 33 H 1.09001 * 109.47436 * 186.04982 * 13 3 2 34 34 H 1.07999 * 125.50300 * 0.09846 * 15 14 13 35 35 H 1.08001 * 120.44147 * 0.05544 * 18 17 16 36 36 H 1.07998 * 119.86206 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5785 2.0994 -1.2054 5 6 2.2475 1.5020 -2.4165 6 1 2.9927 0.7297 -2.2958 7 6 1.9082 1.9414 -3.6785 8 7 1.0011 2.8823 -3.8254 9 14 2.7381 1.2014 -5.1796 10 1 1.9575 0.0283 -5.6487 11 1 2.8025 2.2174 -6.2607 12 1 4.1134 0.7703 -4.8227 13 6 1.5970 2.0928 1.2158 14 6 2.2679 1.4753 2.4156 15 6 1.6980 0.5676 3.2952 16 7 2.5791 0.2567 4.2194 17 7 3.7651 0.9549 3.9661 18 6 4.9694 0.9935 4.6085 19 6 5.9548 1.7844 4.1162 20 35 7.6355 1.8624 4.9792 21 6 5.7169 2.5435 2.9604 22 7 4.5506 2.4887 2.3616 23 6 3.5696 1.7111 2.8387 24 1 -0.3632 0.5153 -0.8891 25 1 -0.3633 -1.0277 -0.0018 26 1 -0.3633 0.5122 0.8908 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4970 2.0087 -1.3060 30 1 1.8488 3.1520 -1.1232 31 1 0.7627 3.1917 -4.7133 32 1 0.5152 2.0146 1.3242 33 1 1.8797 3.1429 1.1418 34 1 0.6914 0.1813 3.2329 35 1 5.1351 0.4017 5.4966 36 1 6.4966 3.1760 2.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602436990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:16 Heat of formation + Delta-G solvation = 114.092872 kcal Electronic energy + Delta-G solvation = -20944.931839 eV Core-core repulsion = 17705.303443 eV Total energy + Delta-G solvation = -3239.628396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.46063 -39.53071 -38.56718 -35.42603 -34.65655 -33.42638 -31.81758 -30.81660 -30.46834 -28.46737 -26.13336 -25.98538 -24.93934 -23.92080 -22.22871 -20.80405 -19.30230 -18.37825 -18.30779 -17.33478 -17.11187 -16.74444 -16.39388 -15.84896 -15.46698 -15.06814 -14.60926 -14.48198 -14.08398 -13.99660 -13.99139 -13.45706 -13.09477 -12.96026 -12.83227 -12.64485 -12.57572 -12.37956 -12.20505 -11.79281 -11.68761 -11.66581 -11.41128 -11.22244 -10.86309 -10.55599 -10.34701 -8.97809 -8.73979 -8.14156 -6.23275 -0.60533 -0.42100 0.05680 1.09015 1.40818 1.42231 1.43783 1.53927 2.20895 2.43707 2.84925 2.94390 3.17433 3.21550 3.55609 3.74279 3.98235 4.11571 4.16657 4.33126 4.40295 4.53717 4.64141 4.76761 4.81698 4.92736 5.04294 5.07030 5.18154 5.29583 5.38071 5.43587 5.56979 5.72913 6.15145 6.23644 6.48215 6.53754 6.76568 6.93758 7.45605 8.95624 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.003096 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.253504 B = 9040.433122 C =10308.115365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 N -0.539 5.539 4 C 0.208 3.792 5 C -0.515 4.515 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.270 1.270 13 C 0.141 3.859 14 C -0.216 4.216 15 C 0.109 3.891 16 N -0.318 5.318 17 N -0.322 5.322 18 C 0.199 3.801 19 C -0.204 4.204 20 Br 0.029 6.971 21 C 0.202 3.798 22 N -0.470 5.470 23 C 0.253 3.747 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.068 0.932 29 H -0.014 1.014 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.227 0.773 35 H 0.216 0.784 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.411 -3.874 22.839 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.060 4.060 3 N -0.263 5.263 4 C 0.082 3.918 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.013 3.987 14 C -0.229 4.229 15 C -0.070 4.070 16 N -0.141 5.141 17 N -0.093 5.093 18 C 0.062 3.938 19 C -0.290 4.290 20 Br 0.112 6.888 21 C 0.015 3.985 22 N -0.181 5.181 23 C 0.026 3.974 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.003 0.997 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.233 0.767 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.156 -4.079 23.288 26.584 hybrid contribution -0.957 0.054 -1.354 1.659 sum 11.199 -4.025 21.934 24.954 Atomic orbital electron populations 1.22264 0.97752 1.02324 1.01286 1.21849 0.93342 0.90273 1.00546 1.62205 1.59970 1.02581 1.01513 1.19375 0.93138 0.92230 0.87099 1.21399 1.21790 1.20833 0.91331 0.92846 1.25804 0.95886 0.95608 1.02028 1.70075 1.33344 1.30287 1.23685 0.85490 0.78988 0.78143 0.78636 1.19790 1.20693 1.19420 1.20099 0.96154 0.96206 0.86263 1.19664 0.92173 1.08304 1.02791 1.24233 1.00228 0.92884 0.89624 1.77834 0.89957 1.20732 1.25601 1.47275 1.11021 1.30990 1.20064 1.22444 0.79654 0.94860 0.96811 1.22355 0.96634 1.07206 1.02805 1.96838 1.16780 1.98156 1.76996 1.23968 0.93503 0.92741 0.88277 1.68413 1.00896 1.19061 1.29747 1.20580 0.95996 0.93241 0.87542 0.94758 0.90909 0.91476 0.93081 0.91403 0.99684 0.98914 0.92818 0.92979 0.92716 0.75699 0.76745 0.77393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.13 9.26 71.98 0.67 -5.46 16 2 C 0.07 2.67 5.70 86.31 0.49 3.17 16 3 N -0.54 -24.13 4.69 -905.39 -4.24 -28.37 16 4 C 0.21 11.26 4.52 85.56 0.39 11.65 16 5 C -0.52 -29.97 8.40 25.60 0.22 -29.75 16 6 H 0.05 3.12 7.36 -2.91 -0.02 3.10 16 7 C 0.00 0.26 5.46 84.66 0.46 0.72 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.14 5.35 5.26 85.55 0.45 5.80 16 14 C -0.22 -7.10 4.76 -19.61 -0.09 -7.19 16 15 C 0.11 2.88 11.16 84.85 0.95 3.82 16 16 N -0.32 -8.62 12.66 -57.51 -0.73 -9.35 16 17 N -0.32 -8.70 3.90 -192.43 -0.75 -9.46 16 18 C 0.20 3.81 11.04 83.35 0.92 4.73 16 19 C -0.20 -3.62 6.21 22.16 0.14 -3.48 16 20 Br 0.03 0.36 33.72 -20.37 -0.69 -0.33 16 21 C 0.20 4.50 11.04 85.29 0.94 5.44 16 22 N -0.47 -15.14 10.48 -192.49 -2.02 -17.16 16 23 C 0.25 8.24 7.86 133.15 1.05 9.29 16 24 H 0.03 1.43 6.29 -2.39 -0.02 1.41 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 1.99 6.34 -2.39 -0.02 1.97 16 27 H 0.05 2.25 6.98 -2.39 -0.02 2.23 16 28 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 29 H -0.01 -0.82 6.01 -2.39 -0.01 -0.84 16 30 H -0.01 -0.43 7.91 -2.39 -0.02 -0.45 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 32 H 0.05 1.80 6.08 -2.39 -0.01 1.78 16 33 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16 34 H 0.23 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.22 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.21 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -72.05 322.42 1.57 -70.48 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.11 Total: 4.58 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.57 Total: -1.26 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.45 Total: -120.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 35 Polarization: 0.36 SS G_CDS: -0.69 Total: -0.33 kcal Total: -72.05 1.57 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.577 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds