Wall clock time and date at job start Tue Mar 31 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47534 * 2 1 4 4 C 1.50706 * 109.47095 * 239.99977 * 2 1 3 5 5 H 1.07999 * 120.00022 * 274.88157 * 4 2 1 6 6 C 1.37871 * 119.99692 * 94.88432 * 4 2 1 7 7 N 1.31511 * 119.99780 * 183.88223 * 6 4 2 8 8 Si 1.86797 * 120.00446 * 3.87806 * 6 4 2 9 9 H 1.48508 * 109.46972 * 84.42465 * 8 6 4 10 10 H 1.48499 * 109.47488 * 204.42607 * 8 6 4 11 11 H 1.48501 * 109.47275 * 324.42950 * 8 6 4 12 12 N 1.46905 * 109.46715 * 120.00167 * 2 1 3 13 13 C 1.46905 * 110.99681 * 176.04152 * 12 2 1 14 14 C 1.46892 * 111.00087 * 299.99895 * 12 2 1 15 15 C 1.50704 * 109.47208 * 170.00546 * 14 12 2 16 16 C 1.38649 * 126.16895 * 259.95856 * 15 14 12 17 17 N 1.31427 * 108.98633 * 180.02562 * 16 15 14 18 18 N 1.39934 * 108.83497 * 359.97438 * 17 16 15 19 19 C 1.36561 * 132.56212 * 179.97438 * 18 17 16 20 20 C 1.35594 * 119.11328 * 179.74550 * 19 18 17 21 21 Br 1.89099 * 120.28475 * 180.29389 * 20 19 18 22 22 C 1.40315 * 119.42858 * 0.55522 * 20 19 18 23 23 N 1.31206 * 120.27515 * 359.44142 * 22 20 19 24 24 C 1.33971 * 120.82996 * 0.27520 * 23 22 20 25 25 H 1.08996 * 109.47508 * 186.76577 * 1 2 3 26 26 H 1.08996 * 109.46931 * 306.77044 * 1 2 3 27 27 H 1.09001 * 109.47098 * 66.76381 * 1 2 3 28 28 H 0.97010 * 120.00275 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47151 * 183.94949 * 13 12 2 30 30 H 1.09001 * 109.47201 * 303.95804 * 13 12 2 31 31 H 1.08997 * 109.46765 * 63.95691 * 13 12 2 32 32 H 1.08991 * 109.47436 * 49.99960 * 14 12 2 33 33 H 1.09002 * 109.46981 * 289.99725 * 14 12 2 34 34 H 1.07999 * 125.51107 * 0.04942 * 16 15 14 35 35 H 1.07998 * 120.43948 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.85929 * 179.72084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1373 -1.7853 -1.2284 6 6 2.3580 0.0119 -2.3588 7 7 2.7232 -0.6130 -3.4568 8 14 2.2802 1.8780 -2.3280 9 1 3.5487 2.4172 -1.7753 10 1 2.0855 2.3882 -3.7090 11 1 1.1446 2.3121 -1.4752 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7947 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8579 -0.8913 3.6159 16 6 0.9672 -1.7241 4.2758 17 7 1.5920 -2.3181 5.2678 18 7 2.9233 -1.8874 5.2858 19 6 3.9808 -2.1888 6.0956 20 6 5.1807 -1.6033 5.8591 21 35 6.6692 -2.0029 6.9547 22 6 5.3069 -0.6941 4.7978 23 7 4.2755 -0.4214 4.0342 24 6 3.0865 -0.9980 4.2546 25 1 -0.3634 -1.0204 0.1211 26 1 -0.3633 0.6152 0.8232 27 1 -0.3633 0.4054 -0.9443 28 1 2.9520 -0.1048 -4.2509 29 1 3.8163 -1.3723 2.0500 30 1 3.8069 -1.2917 0.2718 31 1 3.9192 0.2041 1.2301 32 1 0.4722 0.1323 2.3564 33 1 2.0519 0.9344 2.5281 34 1 -0.0720 -1.8626 4.0164 35 1 3.8640 -2.8876 6.9107 36 1 6.2583 -0.2203 4.6060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602462414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:00 Heat of formation + Delta-G solvation = 141.622948 kcal Electronic energy + Delta-G solvation = -21145.365620 eV Core-core repulsion = 17906.931018 eV Total energy + Delta-G solvation = -3238.434602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50050 -38.37604 -37.07376 -34.45668 -32.78625 -32.38858 -30.67174 -29.73615 -29.20251 -26.58440 -25.11774 -24.65051 -23.43393 -22.76772 -20.74440 -19.19347 -18.34013 -17.44069 -16.92994 -16.33485 -16.26939 -15.02829 -14.49925 -14.18107 -14.02239 -13.86400 -13.44157 -13.23183 -13.13113 -12.58404 -12.42389 -12.18503 -11.96680 -11.31072 -11.16966 -11.04165 -10.94478 -10.84471 -10.77811 -10.63826 -10.21579 -10.13295 -9.93798 -9.73612 -9.46436 -9.03261 -8.54674 -7.90240 -7.19045 -6.05349 -4.03244 0.22660 0.51934 0.81638 2.00050 2.48101 3.16577 3.29237 3.37521 3.39458 3.70205 3.87573 3.96541 4.42883 4.59169 4.93808 4.96325 5.07292 5.19445 5.35247 5.57614 5.73121 5.96681 6.13957 6.20272 6.31320 6.40403 6.45330 6.58087 6.65516 6.78133 6.92887 7.13157 7.26293 7.35898 7.41927 7.67089 8.09331 8.19341 8.71175 9.05323 9.58594 11.07749 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.003093 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.677008 B = 9050.454062 C = 9954.902661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.179 3.821 3 H 0.000 1.000 4 C -0.498 4.498 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.872 3.128 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.527 5.527 13 C 0.048 3.952 14 C 0.125 3.875 15 C -0.180 4.180 16 C 0.109 3.891 17 N -0.308 5.308 18 N -0.317 5.317 19 C 0.205 3.795 20 C -0.210 4.210 21 Br -0.002 7.002 22 C 0.192 3.808 23 N -0.428 5.428 24 C 0.248 3.752 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.012 0.988 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.203 0.797 35 H 0.183 0.817 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -1.358 24.356 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 H 0.018 0.982 4 C -0.536 4.536 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.191 1.191 12 N -0.252 5.252 13 C -0.100 4.100 14 C -0.004 4.004 15 C -0.192 4.192 16 C -0.070 4.070 17 N -0.131 5.131 18 N -0.089 5.089 19 C 0.067 3.933 20 C -0.297 4.297 21 Br 0.081 6.919 22 C 0.004 3.996 23 N -0.138 5.138 24 C 0.023 3.977 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.219 0.781 35 H 0.200 0.800 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.124 -2.219 24.693 25.538 hybrid contribution 0.187 1.796 -0.281 1.828 sum 6.312 -0.423 24.412 25.218 Atomic orbital electron populations 1.21995 0.97970 1.00369 0.98858 1.19739 0.92140 0.92175 0.88709 0.98221 1.20879 1.42887 0.95869 0.94014 0.90216 1.24984 0.94717 0.97900 0.95447 1.69892 1.46230 1.35627 1.01956 0.86946 0.79085 0.86966 0.77063 1.20332 1.21515 1.19063 1.62212 1.10494 1.51834 1.00661 1.22139 0.87597 0.98997 1.01274 1.20411 1.00579 0.92579 0.86827 1.19893 0.89384 1.07403 1.02539 1.23891 1.00678 0.91707 0.90687 1.77911 0.84727 1.25416 1.25073 1.47097 1.09260 1.30687 1.21829 1.21786 0.83023 0.95375 0.93137 1.22191 0.94345 1.08672 1.04482 1.96796 1.36241 1.94053 1.64817 1.23365 0.98101 0.91064 0.87116 1.68409 0.97100 1.22925 1.25354 1.20471 0.94300 0.92593 0.90308 0.92716 0.95963 0.93227 0.92673 0.94029 0.90359 0.96931 0.89753 0.94841 0.78055 0.79970 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.76 37.16 0.33 -2.49 16 2 C 0.18 4.24 1.70 -68.86 -0.12 4.12 16 3 H 0.00 0.00 5.36 -51.93 -0.28 -0.27 16 4 C -0.50 -13.87 7.39 -34.44 -0.25 -14.12 16 5 H 0.08 2.47 8.05 -52.49 -0.42 2.04 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.87 21.58 26.95 -169.99 -4.58 16.99 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.30 6.88 56.52 0.39 -5.91 16 12 N -0.53 -11.27 4.61 -237.73 -1.10 -12.37 16 13 C 0.05 1.04 8.54 60.07 0.51 1.55 16 14 C 0.13 2.22 5.29 -4.98 -0.03 2.19 16 15 C -0.18 -2.89 5.32 -104.23 -0.55 -3.45 16 16 C 0.11 1.51 11.87 -17.57 -0.21 1.30 16 17 N -0.31 -4.40 12.66 30.47 0.39 -4.02 16 18 N -0.32 -4.39 3.90 -12.18 -0.05 -4.44 16 19 C 0.20 2.11 11.04 -16.39 -0.18 1.93 16 20 C -0.21 -1.98 6.21 -39.75 -0.25 -2.23 16 21 Br 0.00 -0.01 33.72 -68.01 -2.29 -2.31 16 22 C 0.19 2.09 11.04 -17.04 -0.19 1.90 16 23 N -0.43 -6.33 8.84 -12.20 -0.11 -6.43 16 24 C 0.25 3.88 6.52 -155.53 -1.01 2.87 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.04 0.83 5.10 -51.93 -0.26 0.56 16 30 H 0.08 1.88 6.82 -51.93 -0.35 1.52 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 33 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.20 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -32.40 317.77 -8.30 -40.70 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.08 Total: -1.93 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.05 Total: -4.48 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.09 Total: -53.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.58 Total: 16.99 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.40 -8.30 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602462414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.325 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds