Wall clock time and date at job start Tue Mar 31 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47534 * 2 1 4 4 C 1.50706 * 109.47095 * 239.99977 * 2 1 3 5 5 H 1.07999 * 120.00022 * 274.88157 * 4 2 1 6 6 C 1.37871 * 119.99692 * 94.88432 * 4 2 1 7 7 N 1.31511 * 119.99780 * 183.88223 * 6 4 2 8 8 Si 1.86797 * 120.00446 * 3.87806 * 6 4 2 9 9 H 1.48508 * 109.46972 * 84.42465 * 8 6 4 10 10 H 1.48499 * 109.47488 * 204.42607 * 8 6 4 11 11 H 1.48501 * 109.47275 * 324.42950 * 8 6 4 12 12 N 1.46905 * 109.46715 * 120.00167 * 2 1 3 13 13 C 1.46905 * 110.99681 * 176.04152 * 12 2 1 14 14 C 1.46892 * 111.00087 * 299.99895 * 12 2 1 15 15 C 1.50704 * 109.47208 * 170.00546 * 14 12 2 16 16 C 1.38649 * 126.16895 * 259.95856 * 15 14 12 17 17 N 1.31427 * 108.98633 * 180.02562 * 16 15 14 18 18 N 1.39934 * 108.83497 * 359.97438 * 17 16 15 19 19 C 1.36561 * 132.56212 * 179.97438 * 18 17 16 20 20 C 1.35594 * 119.11328 * 179.74550 * 19 18 17 21 21 Br 1.89099 * 120.28475 * 180.29389 * 20 19 18 22 22 C 1.40315 * 119.42858 * 0.55522 * 20 19 18 23 23 N 1.31206 * 120.27515 * 359.44142 * 22 20 19 24 24 C 1.33971 * 120.82996 * 0.27520 * 23 22 20 25 25 H 1.08996 * 109.47508 * 186.76577 * 1 2 3 26 26 H 1.08996 * 109.46931 * 306.77044 * 1 2 3 27 27 H 1.09001 * 109.47098 * 66.76381 * 1 2 3 28 28 H 0.97010 * 120.00275 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47151 * 183.94949 * 13 12 2 30 30 H 1.09001 * 109.47201 * 303.95804 * 13 12 2 31 31 H 1.08997 * 109.46765 * 63.95691 * 13 12 2 32 32 H 1.08991 * 109.47436 * 49.99960 * 14 12 2 33 33 H 1.09002 * 109.46981 * 289.99725 * 14 12 2 34 34 H 1.07999 * 125.51107 * 0.04942 * 16 15 14 35 35 H 1.07998 * 120.43948 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.85929 * 179.72084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1373 -1.7853 -1.2284 6 6 2.3580 0.0119 -2.3588 7 7 2.7232 -0.6130 -3.4568 8 14 2.2802 1.8780 -2.3280 9 1 3.5487 2.4172 -1.7753 10 1 2.0855 2.3882 -3.7090 11 1 1.1446 2.3121 -1.4752 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7947 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8579 -0.8913 3.6159 16 6 0.9672 -1.7241 4.2758 17 7 1.5920 -2.3181 5.2678 18 7 2.9233 -1.8874 5.2858 19 6 3.9808 -2.1888 6.0956 20 6 5.1807 -1.6033 5.8591 21 35 6.6692 -2.0029 6.9547 22 6 5.3069 -0.6941 4.7978 23 7 4.2755 -0.4214 4.0342 24 6 3.0865 -0.9980 4.2546 25 1 -0.3634 -1.0204 0.1211 26 1 -0.3633 0.6152 0.8232 27 1 -0.3633 0.4054 -0.9443 28 1 2.9520 -0.1048 -4.2509 29 1 3.8163 -1.3723 2.0500 30 1 3.8069 -1.2917 0.2718 31 1 3.9192 0.2041 1.2301 32 1 0.4722 0.1323 2.3564 33 1 2.0519 0.9344 2.5281 34 1 -0.0720 -1.8626 4.0164 35 1 3.8640 -2.8876 6.9107 36 1 6.2583 -0.2203 4.6060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602462414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:59 Heat of formation + Delta-G solvation = 119.783049 kcal Electronic energy + Delta-G solvation = -21146.312669 eV Core-core repulsion = 17906.931018 eV Total energy + Delta-G solvation = -3239.381651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.49997 -39.40736 -38.66708 -35.56462 -34.54515 -33.45979 -32.24015 -30.86091 -30.44097 -28.12115 -26.51083 -26.00042 -24.94095 -23.86877 -21.96409 -20.90747 -19.38283 -19.06090 -18.34559 -17.39889 -17.22157 -16.69931 -16.00725 -15.54482 -15.43929 -15.15074 -14.72278 -14.47922 -14.33988 -14.09097 -14.03734 -13.68107 -13.12480 -12.88097 -12.83609 -12.60562 -12.35383 -12.26295 -12.03262 -11.88284 -11.77583 -11.69666 -11.62618 -11.03158 -10.89921 -10.72296 -10.36546 -9.07515 -8.79534 -8.25890 -6.27856 -0.64177 -0.44431 0.04467 1.08522 1.33737 1.34975 1.45686 1.46227 2.15864 2.35092 2.77801 2.94615 3.07627 3.19103 3.52304 3.73074 3.91140 4.11249 4.16622 4.44237 4.56064 4.61173 4.68899 4.75440 4.82462 4.90015 4.99440 5.02865 5.15680 5.22468 5.30015 5.37359 5.53683 5.74743 6.14530 6.24552 6.41185 6.45374 6.74815 6.81726 7.37803 8.91221 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.003093 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.677008 B = 9050.454062 C = 9954.902661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.180 3.820 3 H -0.005 1.005 4 C -0.495 4.495 5 H 0.032 0.968 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.934 3.066 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.243 1.243 12 N -0.536 5.536 13 C 0.065 3.935 14 C 0.135 3.865 15 C -0.219 4.219 16 C 0.116 3.884 17 N -0.322 5.322 18 N -0.323 5.323 19 C 0.201 3.799 20 C -0.206 4.206 21 Br 0.028 6.972 22 C 0.204 3.796 23 N -0.472 5.472 24 C 0.243 3.757 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.008 0.992 32 H 0.103 0.897 33 H 0.025 0.975 34 H 0.231 0.769 35 H 0.214 0.786 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -0.374 27.090 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.073 3.927 3 H 0.013 0.987 4 C -0.534 4.534 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.759 3.241 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.167 1.167 12 N -0.261 5.261 13 C -0.083 4.083 14 C 0.006 3.994 15 C -0.232 4.232 16 C -0.062 4.062 17 N -0.145 5.145 18 N -0.094 5.094 19 C 0.064 3.936 20 C -0.292 4.292 21 Br 0.112 6.888 22 C 0.017 3.983 23 N -0.183 5.183 24 C 0.017 3.983 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.121 0.879 33 H 0.043 0.957 34 H 0.247 0.753 35 H 0.230 0.770 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.145 -1.247 27.481 28.187 hybrid contribution 0.399 1.356 -0.944 1.699 sum 6.543 0.109 26.537 27.332 Atomic orbital electron populations 1.21874 0.95551 1.01225 0.99960 1.19648 0.93916 0.91223 0.87955 0.98741 1.21035 1.42350 0.93909 0.96113 0.94992 1.25789 0.94563 1.02988 0.94919 1.70044 1.48257 1.37692 1.02890 0.85930 0.79867 0.80775 0.77544 1.20022 1.21131 1.16656 1.62120 1.10045 1.52375 1.01569 1.21900 0.88166 0.98393 0.99855 1.20333 1.01245 0.92215 0.85574 1.19771 0.90643 1.09493 1.03262 1.24298 1.01633 0.90454 0.89839 1.77860 0.85070 1.26041 1.25575 1.47264 1.09753 1.30396 1.21961 1.22444 0.82393 0.95552 0.93237 1.22337 0.95087 1.07586 1.04171 1.96851 1.34427 1.93822 1.63749 1.23971 0.98119 0.90016 0.86159 1.68444 0.97721 1.24746 1.27435 1.20627 0.94558 0.92567 0.90556 0.92720 0.92172 0.94090 0.92613 0.92611 0.94109 0.97370 0.87939 0.95687 0.75333 0.76951 0.77170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.76 71.98 0.63 -4.53 16 2 C 0.18 8.46 1.70 44.17 0.08 8.54 16 3 H 0.00 -0.24 5.36 -2.39 -0.01 -0.25 16 4 C -0.50 -28.50 7.39 25.60 0.19 -28.31 16 5 H 0.03 2.09 8.05 -2.91 -0.02 2.07 16 6 C 0.01 0.85 5.47 84.65 0.46 1.32 16 7 N -0.95 -59.63 13.96 21.44 0.30 -59.33 16 8 Si 0.93 44.62 26.95 68.60 1.85 46.47 16 9 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.24 -10.65 6.88 99.48 0.68 -9.96 16 12 N -0.54 -22.92 4.61 -906.04 -4.18 -27.10 16 13 C 0.07 2.88 8.54 127.69 1.09 3.97 16 14 C 0.13 4.62 5.29 85.56 0.45 5.07 16 15 C -0.22 -6.82 5.32 -19.61 -0.10 -6.92 16 16 C 0.12 3.04 11.87 84.85 1.01 4.05 16 17 N -0.32 -8.70 12.66 -57.51 -0.73 -9.43 16 18 N -0.32 -8.42 3.90 -192.44 -0.75 -9.17 16 19 C 0.20 3.67 11.04 83.34 0.92 4.59 16 20 C -0.21 -3.37 6.21 22.16 0.14 -3.23 16 21 Br 0.03 0.32 33.72 -20.37 -0.69 -0.36 16 22 C 0.20 4.03 11.04 85.29 0.94 4.97 16 23 N -0.47 -13.47 8.84 -192.50 -1.70 -15.18 16 24 C 0.24 7.36 6.52 133.15 0.87 8.23 16 25 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 1.96 6.57 -2.39 -0.02 1.95 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 29 H 0.06 2.27 5.10 -2.39 -0.01 2.25 16 30 H 0.04 2.05 6.82 -2.39 -0.02 2.03 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.10 3.05 5.97 -2.39 -0.01 3.04 16 33 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.23 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.21 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -72.75 317.77 1.86 -70.90 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.09 Total: 5.48 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.67 Total: -2.27 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -7.06 Total: -120.22 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.85 Total: 46.47 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.69 Total: -0.36 kcal Total: -72.75 1.86 -70.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602462414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.679 kcal (2) G-P(sol) polarization free energy of solvation -72.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds