Wall clock time and date at job start Tue Mar 31 2020 21:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 C 1.50701 * 109.47128 * 120.00678 * 2 1 3 5 5 H 1.07994 * 119.99789 * 120.00210 * 4 2 1 6 6 C 1.37872 * 119.99760 * 299.99689 * 4 2 1 7 7 N 1.31515 * 120.00487 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47335 * 89.99979 * 8 6 4 10 10 H 1.48501 * 109.46994 * 209.99986 * 8 6 4 11 11 H 1.48503 * 109.46903 * 329.99956 * 8 6 4 12 12 N 1.46898 * 109.46668 * 240.00547 * 2 1 3 13 13 C 1.46906 * 110.99888 * 183.95178 * 12 2 1 14 14 C 1.46902 * 111.00283 * 60.00217 * 12 2 1 15 15 C 1.50699 * 109.47144 * 190.00178 * 14 12 2 16 16 C 1.38654 * 126.17111 * 259.68351 * 15 14 12 17 17 N 1.31427 * 108.98746 * 179.85465 * 16 15 14 18 18 N 1.39933 * 108.83351 * 0.41208 * 17 16 15 19 19 C 1.36558 * 132.55449 * 179.71667 * 18 17 16 20 20 C 1.35596 * 119.11016 * 180.02562 * 19 18 17 21 21 Br 1.89103 * 120.28613 * 180.02562 * 20 19 18 22 22 C 1.40318 * 119.43305 * 359.97438 * 20 19 18 23 23 N 1.31211 * 120.27046 * 0.02582 * 22 20 19 24 24 C 1.33970 * 120.83170 * 359.97021 * 23 22 20 25 25 H 1.09006 * 109.47128 * 299.99520 * 1 2 3 26 26 H 1.08999 * 109.47554 * 59.99105 * 1 2 3 27 27 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00211 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 30 30 H 1.09001 * 109.47272 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 32 32 H 1.09001 * 109.46557 * 309.99495 * 14 12 2 33 33 H 1.08994 * 109.47575 * 69.99497 * 14 12 2 34 34 H 1.08001 * 125.50596 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.44810 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.86358 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1200 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3445 -0.9495 5.1121 11 1 2.4880 -2.5658 3.7118 12 7 2.0195 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0261 -2.4211 15 6 1.8577 -0.8908 -3.6160 16 6 2.9202 -0.7271 -4.4917 17 7 2.8692 -1.6691 -5.4067 18 7 1.7554 -2.4793 -5.1595 19 6 1.2494 -3.5742 -5.7998 20 6 0.1275 -4.1618 -5.3153 21 35 -0.6013 -5.6800 -6.1753 22 6 -0.4873 -3.6344 -4.1695 23 7 0.0189 -2.5813 -3.5726 24 6 1.1268 -1.9923 -4.0421 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7088 1.1609 3.4845 29 1 3.8028 -1.3531 -0.3069 30 1 3.8208 -1.3115 -2.0861 31 1 3.9186 0.2052 -1.1592 32 1 0.4721 0.1326 -2.3563 33 1 2.0517 0.9348 -2.5280 34 1 3.6698 0.0480 -4.4304 35 1 1.7357 -3.9663 -6.6807 36 1 -1.3813 -4.0967 -3.7779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602462423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:03 Heat of formation + Delta-G solvation = 140.244988 kcal Electronic energy + Delta-G solvation = -21026.358921 eV Core-core repulsion = 17787.864566 eV Total energy + Delta-G solvation = -3238.494355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40125 -38.34713 -36.84931 -34.35624 -32.89890 -32.36547 -30.29296 -29.57572 -28.76537 -26.48076 -25.01899 -24.56157 -23.60492 -22.48408 -20.78214 -19.30223 -18.28308 -17.30313 -16.41015 -16.19840 -16.02746 -15.09499 -14.54667 -14.04282 -13.94956 -13.84376 -13.45286 -13.11767 -12.97284 -12.39559 -12.29168 -11.90390 -11.66649 -11.38241 -11.02850 -11.00147 -10.94777 -10.80957 -10.61614 -10.40882 -10.02854 -9.96472 -9.87860 -9.74470 -9.40982 -8.81269 -8.38191 -7.78744 -7.05384 -5.95576 -3.99516 0.31409 0.60621 0.87523 2.06105 2.50486 3.28401 3.33472 3.40078 3.44658 3.82131 3.93742 4.04456 4.46018 4.65785 5.01369 5.04634 5.13891 5.34362 5.46041 5.60605 5.81636 6.06223 6.20499 6.24206 6.35248 6.45341 6.54104 6.83310 6.96714 7.17234 7.23850 7.30949 7.56373 7.60936 7.81473 7.89389 8.30474 8.40439 8.68246 9.07059 9.65097 11.11092 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.003008 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.244393 B = 9307.284443 C =10172.497175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.040 3.960 14 C 0.129 3.871 15 C -0.181 4.181 16 C 0.096 3.904 17 N -0.309 5.309 18 N -0.318 5.318 19 C 0.200 3.800 20 C -0.207 4.207 21 Br -0.004 7.004 22 C 0.189 3.811 23 N -0.415 5.415 24 C 0.261 3.739 25 H 0.083 0.917 26 H 0.008 0.992 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.011 0.989 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 -10.547 -20.648 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.108 3.892 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.108 4.108 14 C 0.000 4.000 15 C -0.193 4.193 16 C -0.083 4.083 17 N -0.133 5.133 18 N -0.090 5.090 19 C 0.062 3.938 20 C -0.294 4.294 21 Br 0.079 6.921 22 C 0.001 3.999 23 N -0.124 5.124 24 C 0.036 3.964 25 H 0.101 0.899 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.215 0.785 35 H 0.199 0.801 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.706 -11.286 -21.038 24.027 hybrid contribution 0.856 0.551 0.987 1.418 sum -1.850 -10.734 -20.051 22.819 Atomic orbital electron populations 1.21823 0.97579 0.99822 0.99640 1.19240 0.92442 0.91815 0.85711 0.98510 1.21151 1.30786 1.12147 0.89777 0.92017 1.24911 0.95258 0.95115 0.98913 1.69894 1.37002 1.23137 1.23285 0.86555 0.78411 0.80103 0.82673 1.20872 1.21284 1.19922 1.62140 1.08974 1.52671 1.01597 1.22172 0.89073 0.98841 1.00750 1.20364 1.01403 0.91715 0.86556 1.19915 0.97545 0.99554 1.02328 1.23891 0.97238 0.96195 0.90961 1.77875 1.02720 1.07084 1.25625 1.47125 1.20593 1.20409 1.20861 1.21750 0.91743 0.84120 0.96184 1.22233 1.01505 1.01949 1.03685 1.96785 1.83597 1.33783 1.77928 1.23394 0.97848 0.90154 0.88549 1.68384 1.08022 1.08663 1.27316 1.20426 0.92168 0.96681 0.87142 0.89853 0.97303 0.94508 0.93069 0.90891 0.94357 0.97047 0.89566 0.94940 0.78494 0.80088 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.76 37.16 0.33 -2.92 16 2 C 0.21 5.45 2.06 -68.87 -0.14 5.31 16 3 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 16 4 C -0.50 -13.83 7.93 -34.44 -0.27 -14.10 16 5 H 0.06 1.72 6.39 -52.49 -0.34 1.38 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.65 4.61 -237.73 -1.10 -12.75 16 13 C 0.04 0.81 9.07 60.07 0.54 1.36 16 14 C 0.13 2.42 5.28 -4.98 -0.03 2.39 16 15 C -0.18 -3.03 4.76 -104.23 -0.50 -3.52 16 16 C 0.10 1.36 11.14 -17.57 -0.20 1.16 16 17 N -0.31 -4.52 12.66 30.47 0.39 -4.14 16 18 N -0.32 -4.57 3.90 -12.18 -0.05 -4.61 16 19 C 0.20 2.16 11.04 -16.39 -0.18 1.98 16 20 C -0.21 -2.08 6.21 -39.74 -0.25 -2.32 16 21 Br 0.00 -0.03 33.72 -68.01 -2.29 -2.32 16 22 C 0.19 2.23 11.04 -17.04 -0.19 2.04 16 23 N -0.41 -6.66 10.48 -12.20 -0.13 -6.78 16 24 C 0.26 4.31 7.86 -155.53 -1.22 3.09 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 26 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.58 6.23 -51.93 -0.32 1.26 16 30 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 1.70 5.83 -51.93 -0.30 1.40 16 33 H 0.03 0.58 8.12 -51.93 -0.42 0.15 16 34 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -31.49 320.34 -8.97 -40.46 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.03 Total: -2.22 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.19 Total: -4.00 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.26 Total: -53.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.29 Total: -2.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.49 -8.97 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602462423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.710 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds