Wall clock time and date at job start Tue Mar 31 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 C 1.50701 * 109.47128 * 120.00678 * 2 1 3 5 5 H 1.07994 * 119.99789 * 120.00210 * 4 2 1 6 6 C 1.37872 * 119.99760 * 299.99689 * 4 2 1 7 7 N 1.31515 * 120.00487 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47335 * 89.99979 * 8 6 4 10 10 H 1.48501 * 109.46994 * 209.99986 * 8 6 4 11 11 H 1.48503 * 109.46903 * 329.99956 * 8 6 4 12 12 N 1.46898 * 109.46668 * 240.00547 * 2 1 3 13 13 C 1.46906 * 110.99888 * 183.95178 * 12 2 1 14 14 C 1.46902 * 111.00283 * 60.00217 * 12 2 1 15 15 C 1.50699 * 109.47144 * 190.00178 * 14 12 2 16 16 C 1.38654 * 126.17111 * 259.68351 * 15 14 12 17 17 N 1.31427 * 108.98746 * 179.85465 * 16 15 14 18 18 N 1.39933 * 108.83351 * 0.41208 * 17 16 15 19 19 C 1.36558 * 132.55449 * 179.71667 * 18 17 16 20 20 C 1.35596 * 119.11016 * 180.02562 * 19 18 17 21 21 Br 1.89103 * 120.28613 * 180.02562 * 20 19 18 22 22 C 1.40318 * 119.43305 * 359.97438 * 20 19 18 23 23 N 1.31211 * 120.27046 * 0.02582 * 22 20 19 24 24 C 1.33970 * 120.83170 * 359.97021 * 23 22 20 25 25 H 1.09006 * 109.47128 * 299.99520 * 1 2 3 26 26 H 1.08999 * 109.47554 * 59.99105 * 1 2 3 27 27 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00211 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 30 30 H 1.09001 * 109.47272 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 32 32 H 1.09001 * 109.46557 * 309.99495 * 14 12 2 33 33 H 1.08994 * 109.47575 * 69.99497 * 14 12 2 34 34 H 1.08001 * 125.50596 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.44810 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.86358 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1200 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3445 -0.9495 5.1121 11 1 2.4880 -2.5658 3.7118 12 7 2.0195 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0261 -2.4211 15 6 1.8577 -0.8908 -3.6160 16 6 2.9202 -0.7271 -4.4917 17 7 2.8692 -1.6691 -5.4067 18 7 1.7554 -2.4793 -5.1595 19 6 1.2494 -3.5742 -5.7998 20 6 0.1275 -4.1618 -5.3153 21 35 -0.6013 -5.6800 -6.1753 22 6 -0.4873 -3.6344 -4.1695 23 7 0.0189 -2.5813 -3.5726 24 6 1.1268 -1.9923 -4.0421 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7088 1.1609 3.4845 29 1 3.8028 -1.3531 -0.3069 30 1 3.8208 -1.3115 -2.0861 31 1 3.9186 0.2052 -1.1592 32 1 0.4721 0.1326 -2.3563 33 1 2.0517 0.9348 -2.5280 34 1 3.6698 0.0480 -4.4304 35 1 1.7357 -3.9663 -6.6807 36 1 -1.3813 -4.0967 -3.7779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602462423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:02 Heat of formation + Delta-G solvation = 120.349354 kcal Electronic energy + Delta-G solvation = -21027.221660 eV Core-core repulsion = 17787.864566 eV Total energy + Delta-G solvation = -3239.357094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.45351 -39.45063 -38.49470 -35.52251 -34.66361 -33.40833 -31.68291 -30.87459 -30.22320 -28.06715 -26.46259 -25.98299 -25.07343 -23.74749 -22.06570 -21.04151 -19.34931 -18.33715 -18.31653 -17.36694 -17.11956 -16.87992 -15.86642 -15.58525 -15.47381 -15.19886 -14.71029 -14.25715 -14.06026 -13.98895 -13.97896 -13.29550 -12.96167 -12.91939 -12.80806 -12.68470 -12.58136 -12.20815 -12.01972 -11.90536 -11.69623 -11.65168 -11.53478 -10.87608 -10.82866 -10.48963 -10.34083 -8.97346 -8.76531 -8.07163 -6.18766 -0.60085 -0.41496 0.06041 1.09458 1.42077 1.43501 1.44371 1.54641 2.21613 2.45303 2.85163 2.94889 3.20507 3.22076 3.56581 3.74841 3.99546 4.13075 4.18142 4.41738 4.57787 4.74366 4.76606 4.82040 4.85187 5.06242 5.09493 5.12472 5.18215 5.31083 5.38732 5.55742 5.76757 5.84353 6.23570 6.31183 6.48059 6.54271 6.81415 6.96424 7.50058 8.98377 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.003008 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.244393 B = 9307.284443 C =10172.497175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.219 3.781 3 H -0.034 1.034 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.539 5.539 13 C 0.049 3.951 14 C 0.139 3.861 15 C -0.218 4.218 16 C 0.106 3.894 17 N -0.319 5.319 18 N -0.322 5.322 19 C 0.198 3.802 20 C -0.203 4.203 21 Br 0.029 6.971 22 C 0.201 3.799 23 N -0.467 5.467 24 C 0.255 3.745 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.226 0.774 35 H 0.215 0.785 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -12.331 -22.132 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.113 3.887 3 H -0.016 1.016 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.264 5.264 13 C -0.100 4.100 14 C 0.011 3.989 15 C -0.231 4.231 16 C -0.072 4.072 17 N -0.142 5.142 18 N -0.094 5.094 19 C 0.061 3.939 20 C -0.289 4.289 21 Br 0.112 6.888 22 C 0.015 3.985 23 N -0.178 5.178 24 C 0.028 3.972 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.242 0.758 35 H 0.232 0.768 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.431 -13.100 -22.562 26.203 hybrid contribution 0.649 0.943 1.295 1.728 sum -1.782 -12.157 -21.267 24.561 Atomic orbital electron populations 1.21607 0.97418 0.98930 0.99369 1.19014 0.92517 0.90195 0.87010 1.01626 1.21403 1.30925 1.12111 0.91046 0.92693 1.25670 0.95399 0.95790 1.01729 1.70017 1.37762 1.24227 1.23957 0.85566 0.78059 0.78956 0.79085 1.20117 1.20796 1.19660 1.62054 1.10017 1.52674 1.01608 1.22079 0.88101 0.98943 1.00865 1.20170 1.00201 0.92474 0.86104 1.19688 0.99751 1.00792 1.02842 1.24251 0.96817 0.96360 0.89798 1.77830 1.03096 1.07395 1.25908 1.47277 1.20393 1.21067 1.20632 1.22438 0.91810 0.82912 0.96694 1.22361 1.00991 1.02546 1.03045 1.96839 1.83095 1.31710 1.77153 1.23977 0.97821 0.88514 0.88207 1.68415 1.09053 1.10923 1.29374 1.20547 0.92320 0.96677 0.87645 0.92216 0.95389 0.95490 0.92966 0.92906 0.92032 0.96738 0.91289 0.94152 0.75772 0.76816 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.76 71.98 0.63 -5.27 16 2 C 0.22 11.52 2.06 44.17 0.09 11.61 16 3 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 4 C -0.52 -29.16 7.93 25.60 0.20 -28.95 16 5 H 0.05 3.12 6.39 -2.91 -0.02 3.10 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.43 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.54 -24.12 4.61 -906.04 -4.18 -28.30 16 13 C 0.05 1.97 9.07 127.69 1.16 3.12 16 14 C 0.14 5.30 5.28 85.56 0.45 5.75 16 15 C -0.22 -7.21 4.76 -19.61 -0.09 -7.31 16 16 C 0.11 2.87 11.14 84.85 0.94 3.82 16 17 N -0.32 -8.78 12.66 -57.50 -0.73 -9.51 16 18 N -0.32 -8.75 3.90 -192.44 -0.75 -9.50 16 19 C 0.20 3.80 11.04 83.35 0.92 4.72 16 20 C -0.20 -3.58 6.21 22.16 0.14 -3.44 16 21 Br 0.03 0.35 33.72 -20.37 -0.69 -0.33 16 22 C 0.20 4.42 11.04 85.29 0.94 5.36 16 23 N -0.47 -14.78 10.48 -192.50 -2.02 -16.80 16 24 C 0.25 8.27 7.86 133.15 1.05 9.32 16 25 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 26 H 0.03 1.27 6.20 -2.39 -0.01 1.26 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 2.32 6.23 -2.39 -0.01 2.31 16 30 H 0.06 2.18 6.59 -2.39 -0.02 2.16 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 2.81 5.83 -2.39 -0.01 2.79 16 33 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.23 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -68.90 320.34 1.90 -67.01 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.11 Total: 4.50 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.88 Total: -0.12 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -7.43 Total: -117.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -0.69 Total: -0.33 kcal Total: -68.90 1.90 -67.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602462423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.355 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds