Wall clock time and date at job start Tue Mar 31 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99706 * 2 1 4 4 H 1.48506 * 109.46926 * 269.99671 * 3 2 1 5 5 H 1.48499 * 109.47168 * 29.99263 * 3 2 1 6 6 H 1.48497 * 109.47189 * 149.99806 * 3 2 1 7 7 C 1.37873 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47186 * 179.97438 * 10 9 7 12 12 N 1.46891 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.46907 * 111.00050 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47361 * 179.97438 * 13 12 11 15 15 C 1.38651 * 126.17481 * 260.08065 * 14 13 12 16 16 N 1.31426 * 108.98318 * 180.30082 * 15 14 13 17 17 N 1.39930 * 108.84150 * 359.77195 * 16 15 14 18 18 C 1.36559 * 132.56320 * 179.97438 * 17 16 15 19 19 C 1.35593 * 119.11234 * 180.02562 * 18 17 16 20 20 Br 1.89100 * 120.28257 * 180.02562 * 19 18 17 21 21 C 1.40317 * 119.43267 * 0.02562 * 19 18 17 22 22 N 1.31204 * 120.27357 * 359.97438 * 21 19 18 23 23 C 1.33974 * 120.83132 * 0.02562 * 22 21 19 24 24 H 0.97000 * 120.00322 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47154 * 59.99324 * 9 7 2 26 26 H 1.09000 * 109.46710 * 299.99909 * 9 7 2 27 27 H 1.09002 * 109.47410 * 59.99807 * 10 9 7 28 28 H 1.08998 * 109.47029 * 299.99638 * 10 9 7 29 29 H 1.08994 * 109.47013 * 59.99348 * 11 10 9 30 30 H 1.09007 * 109.46496 * 300.00134 * 11 10 9 31 31 H 1.00905 * 111.00337 * 56.05122 * 12 11 10 32 32 H 1.08997 * 109.47022 * 59.99597 * 13 12 11 33 33 H 1.09001 * 109.46539 * 300.00284 * 13 12 11 34 34 H 1.07993 * 125.50712 * 0.09556 * 15 14 13 35 35 H 1.07997 * 120.44138 * 0.05345 * 18 17 16 36 36 H 1.08002 * 119.86434 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0006 13 6 1.7348 -7.3949 0.0018 14 6 2.7444 -8.5138 0.0005 15 6 3.1479 -9.2507 -1.1025 16 7 4.0344 -10.1423 -0.7199 17 7 4.2429 -10.0101 0.6574 18 6 5.0459 -10.6765 1.5383 19 6 5.0333 -10.3159 2.8453 20 35 6.1326 -11.2158 4.0934 21 6 4.1976 -9.2694 3.2638 22 7 3.4354 -8.6448 2.3976 23 6 3.4393 -8.9922 1.1037 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5566 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.8534 -5.0450 -0.8885 30 1 0.8541 -5.0445 0.8915 31 1 3.0705 -6.0364 0.7815 32 1 1.1090 -7.4697 -0.8875 33 1 1.1109 -7.4690 0.8925 34 1 2.7890 -9.1162 -2.1121 35 1 5.6828 -11.4797 1.1983 36 1 4.1818 -8.9767 4.3033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602538201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:45 Heat of formation + Delta-G solvation = 112.548327 kcal Electronic energy + Delta-G solvation = -19679.624732 eV Core-core repulsion = 16439.929360 eV Total energy + Delta-G solvation = -3239.695372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.75073 -38.62406 -36.47549 -34.70584 -33.47956 -32.77581 -31.50391 -30.18215 -29.32413 -26.53182 -25.36619 -24.61099 -23.12233 -22.05974 -21.14733 -20.01946 -18.68256 -17.66886 -16.61167 -16.53240 -16.21667 -15.47641 -14.75485 -14.53478 -14.33579 -14.04179 -13.91797 -13.62917 -13.32213 -13.23896 -12.34054 -12.24149 -11.89884 -11.69646 -11.42791 -11.28174 -11.15643 -11.03956 -10.78476 -10.51385 -10.46001 -10.27566 -9.73538 -9.62671 -9.30428 -9.01118 -8.30453 -8.29036 -7.97371 -5.94767 -3.96484 -0.02925 0.25060 0.60992 1.73977 2.20044 2.87274 3.35689 3.41484 3.42086 3.45440 3.61797 3.72592 4.34348 4.49407 4.64767 4.66733 4.78972 4.89212 5.25213 5.40947 5.41746 5.64143 5.77262 5.85360 5.93770 6.05027 6.10491 6.40528 6.79516 6.83781 6.98773 7.12438 7.20734 7.42311 7.70372 7.74866 7.90547 8.06305 8.49891 9.10795 9.67169 11.16714 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002018 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.813534 B =13868.570167 C =14951.504191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.687 5.687 13 C 0.140 3.860 14 C -0.198 4.198 15 C 0.113 3.887 16 N -0.305 5.305 17 N -0.315 5.315 18 C 0.207 3.793 19 C -0.211 4.211 20 Br 0.004 6.996 21 C 0.201 3.799 22 N -0.439 5.439 23 C 0.251 3.749 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.338 0.662 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.205 0.795 35 H 0.186 0.814 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 -29.916 7.736 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.318 5.318 13 C 0.010 3.990 14 C -0.211 4.211 15 C -0.066 4.066 16 N -0.128 5.128 17 N -0.086 5.086 18 C 0.069 3.931 19 C -0.297 4.297 20 Br 0.087 6.913 21 C 0.013 3.987 22 N -0.149 5.149 23 C 0.026 3.974 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.221 0.779 35 H 0.203 0.797 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.756 -30.321 7.022 33.270 hybrid contribution 0.009 1.036 0.705 1.253 sum 11.765 -29.285 7.728 32.493 Atomic orbital electron populations 1.69966 1.06038 1.26494 1.51156 1.25029 0.94847 0.99224 0.95460 0.86603 0.79847 0.83529 0.78081 1.20679 1.21274 1.19908 1.21269 0.93050 0.91098 1.50156 0.92719 1.19067 0.94026 0.91350 0.97123 1.21613 0.99159 0.93012 1.00642 1.22130 0.94132 0.90708 0.99956 1.60685 1.20216 1.00886 1.49996 1.20109 0.91943 0.85759 1.01191 1.19756 1.07138 1.05034 0.89135 1.23932 0.91800 0.90615 1.00207 1.77970 1.24002 1.26180 0.84655 1.47119 1.28471 1.24435 1.08621 1.21860 0.90332 0.94402 0.86490 1.22248 1.07627 1.05727 0.94139 1.96838 1.64299 1.75665 1.54490 1.23414 0.87198 0.87787 1.00261 1.68326 1.21195 1.26427 0.98979 1.20548 0.94760 0.90450 0.91684 0.93079 0.96562 0.96770 0.93764 0.92641 0.91397 0.95664 0.84439 0.89882 0.94283 0.77865 0.79703 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.06 5.69 -3.83 -0.02 1.03 16 12 N -0.69 -10.71 6.49 -115.06 -0.75 -11.46 16 13 C 0.14 1.83 6.18 -4.97 -0.03 1.79 16 14 C -0.20 -2.46 5.70 -104.23 -0.59 -3.05 16 15 C 0.11 1.23 11.88 -17.57 -0.21 1.02 16 16 N -0.31 -3.58 12.66 30.47 0.39 -3.20 16 17 N -0.32 -3.53 3.90 -12.17 -0.05 -3.58 16 18 C 0.21 1.66 11.04 -16.39 -0.18 1.48 16 19 C -0.21 -1.51 6.21 -39.75 -0.25 -1.76 16 20 Br 0.00 0.02 33.72 -68.01 -2.29 -2.27 16 21 C 0.20 1.67 11.04 -17.04 -0.19 1.48 16 22 N -0.44 -5.13 10.48 -12.19 -0.13 -5.26 16 23 C 0.25 3.13 7.86 -155.52 -1.22 1.91 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.34 5.40 8.72 -39.29 -0.34 5.06 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.19 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -33.33 336.02 -9.97 -43.30 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.53 Total: -1.04 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.39 Total: -11.92 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.20 Total: -50.19 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.29 Total: -2.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.33 -9.97 -43.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602538201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.847 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds