Wall clock time and date at job start Tue Mar 31 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99706 * 2 1 4 4 H 1.48506 * 109.46926 * 269.99671 * 3 2 1 5 5 H 1.48499 * 109.47168 * 29.99263 * 3 2 1 6 6 H 1.48497 * 109.47189 * 149.99806 * 3 2 1 7 7 C 1.37873 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47186 * 179.97438 * 10 9 7 12 12 N 1.46891 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.46907 * 111.00050 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47361 * 179.97438 * 13 12 11 15 15 C 1.38651 * 126.17481 * 260.08065 * 14 13 12 16 16 N 1.31426 * 108.98318 * 180.30082 * 15 14 13 17 17 N 1.39930 * 108.84150 * 359.77195 * 16 15 14 18 18 C 1.36559 * 132.56320 * 179.97438 * 17 16 15 19 19 C 1.35593 * 119.11234 * 180.02562 * 18 17 16 20 20 Br 1.89100 * 120.28257 * 180.02562 * 19 18 17 21 21 C 1.40317 * 119.43267 * 0.02562 * 19 18 17 22 22 N 1.31204 * 120.27357 * 359.97438 * 21 19 18 23 23 C 1.33974 * 120.83132 * 0.02562 * 22 21 19 24 24 H 0.97000 * 120.00322 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47154 * 59.99324 * 9 7 2 26 26 H 1.09000 * 109.46710 * 299.99909 * 9 7 2 27 27 H 1.09002 * 109.47410 * 59.99807 * 10 9 7 28 28 H 1.08998 * 109.47029 * 299.99638 * 10 9 7 29 29 H 1.08994 * 109.47013 * 59.99348 * 11 10 9 30 30 H 1.09007 * 109.46496 * 300.00134 * 11 10 9 31 31 H 1.00905 * 111.00337 * 56.05122 * 12 11 10 32 32 H 1.08997 * 109.47022 * 59.99597 * 13 12 11 33 33 H 1.09001 * 109.46539 * 300.00284 * 13 12 11 34 34 H 1.07993 * 125.50712 * 0.09556 * 15 14 13 35 35 H 1.07997 * 120.44138 * 0.05345 * 18 17 16 36 36 H 1.08002 * 119.86434 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1035 0.0006 13 6 1.7348 -7.3949 0.0018 14 6 2.7444 -8.5138 0.0005 15 6 3.1479 -9.2507 -1.1025 16 7 4.0344 -10.1423 -0.7199 17 7 4.2429 -10.0101 0.6574 18 6 5.0459 -10.6765 1.5383 19 6 5.0333 -10.3159 2.8453 20 35 6.1326 -11.2158 4.0934 21 6 4.1976 -9.2694 3.2638 22 7 3.4354 -8.6448 2.3976 23 6 3.4393 -8.9922 1.1037 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5566 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.8534 -5.0450 -0.8885 30 1 0.8541 -5.0445 0.8915 31 1 3.0705 -6.0364 0.7815 32 1 1.1090 -7.4697 -0.8875 33 1 1.1109 -7.4690 0.8925 34 1 2.7890 -9.1162 -2.1121 35 1 5.6828 -11.4797 1.1983 36 1 4.1818 -8.9767 4.3033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602538201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:44 Heat of formation + Delta-G solvation = 91.218417 kcal Electronic energy + Delta-G solvation = -19680.549667 eV Core-core repulsion = 16439.929360 eV Total energy + Delta-G solvation = -3240.620306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51808 -39.37104 -37.79438 -35.83576 -35.09973 -33.62270 -33.08243 -31.08948 -30.31098 -28.14366 -26.09294 -25.93240 -24.20688 -23.50552 -22.18085 -21.62362 -19.45975 -18.47292 -18.40937 -17.33098 -17.27250 -16.72457 -16.53780 -15.68449 -15.41244 -15.31341 -14.79791 -14.72014 -14.31507 -14.15408 -14.05667 -13.57774 -13.25131 -12.93480 -12.90696 -12.66031 -12.45887 -12.33542 -12.14909 -11.73491 -11.72773 -11.50565 -11.37044 -11.09764 -10.99301 -10.53862 -10.41945 -9.40928 -8.95610 -8.18734 -6.29663 -0.69042 -0.48957 0.02145 1.04011 1.40361 1.41040 1.42251 1.53423 2.10140 2.42186 2.71867 2.90106 3.14067 3.15697 3.45280 3.69092 3.85823 4.04931 4.12985 4.25978 4.40097 4.45165 4.70732 4.73074 4.76884 4.90331 5.01380 5.11728 5.13428 5.26589 5.32839 5.53375 5.77416 5.87604 6.08861 6.19929 6.29330 6.38134 6.43089 6.87015 7.39264 8.93169 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002018 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.813534 B =13868.570167 C =14951.504191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.073 3.927 12 N -0.685 5.685 13 C 0.147 3.853 14 C -0.227 4.227 15 C 0.118 3.882 16 N -0.324 5.324 17 N -0.322 5.322 18 C 0.201 3.799 19 C -0.206 4.206 20 Br 0.028 6.972 21 C 0.209 3.791 22 N -0.476 5.476 23 C 0.243 3.757 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.009 1.009 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.336 0.664 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.231 0.769 35 H 0.213 0.787 36 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -30.703 8.244 34.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.056 4.056 12 N -0.316 5.316 13 C 0.018 3.982 14 C -0.240 4.240 15 C -0.061 4.061 16 N -0.147 5.147 17 N -0.093 5.093 18 C 0.064 3.936 19 C -0.292 4.292 20 Br 0.111 6.889 21 C 0.023 3.977 22 N -0.187 5.187 23 C 0.016 3.984 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.009 0.991 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.153 0.847 32 H 0.114 0.886 33 H 0.049 0.951 34 H 0.247 0.753 35 H 0.230 0.770 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.433 -31.145 7.545 34.748 hybrid contribution -0.439 1.166 0.690 1.424 sum 12.994 -29.979 8.235 33.696 Atomic orbital electron populations 1.70095 1.07753 1.27766 1.51737 1.25992 0.95815 1.03367 0.94746 0.85442 0.78630 0.78402 0.78544 1.19695 1.20588 1.18859 1.21697 0.93473 0.92492 1.50467 0.92437 1.18966 0.94389 0.92959 0.94872 1.21363 0.98018 0.93148 1.00412 1.21845 0.93917 0.89924 0.99946 1.60651 1.19751 1.01343 1.49837 1.20052 0.92107 0.84644 1.01419 1.19715 1.08348 1.05849 0.90042 1.24347 0.91049 0.89710 1.01002 1.77907 1.24761 1.26906 0.85119 1.47276 1.28758 1.24528 1.08734 1.22458 0.89988 0.94661 0.86482 1.22366 1.07254 1.05215 0.94351 1.96881 1.63454 1.75081 1.53437 1.23993 0.85715 0.86978 1.00984 1.68377 1.23168 1.28087 0.99113 1.20745 0.94808 0.90674 0.92144 0.92747 0.98727 0.99070 0.93743 0.92928 0.91129 0.96037 0.84742 0.88552 0.95061 0.75291 0.77021 0.76930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.97 5.41 30.59 0.17 -3.80 16 11 C 0.07 2.61 5.69 86.31 0.49 3.10 16 12 N -0.69 -21.21 6.49 -517.93 -3.36 -24.58 16 13 C 0.15 3.80 6.18 85.55 0.53 4.33 16 14 C -0.23 -5.55 5.70 -19.61 -0.11 -5.66 16 15 C 0.12 2.46 11.88 84.85 1.01 3.46 16 16 N -0.32 -7.33 12.66 -57.51 -0.73 -8.05 16 17 N -0.32 -6.92 3.90 -192.43 -0.75 -7.68 16 18 C 0.20 2.89 11.04 83.34 0.92 3.81 16 19 C -0.21 -2.57 6.21 22.16 0.14 -2.43 16 20 Br 0.03 0.24 33.72 -20.37 -0.69 -0.45 16 21 C 0.21 3.17 11.04 85.29 0.94 4.11 16 22 N -0.48 -10.87 10.48 -192.49 -2.02 -12.89 16 23 C 0.24 5.97 7.86 133.15 1.05 7.01 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.34 10.70 8.72 -89.69 -0.78 9.92 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.21 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.98 336.02 1.06 -70.92 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.32 Total: 8.94 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.97 Total: -15.88 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -6.57 Total: -110.76 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -0.69 Total: -0.45 kcal Total: -71.98 1.06 -70.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602538201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.142 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds