Wall clock time and date at job start Tue Mar 31 2020 21:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 H 1.09001 * 109.46767 * 305.51399 * 3 2 1 5 5 C 1.50705 * 109.46890 * 185.51672 * 3 2 1 6 6 H 1.07996 * 120.00248 * 275.06244 * 5 3 2 7 7 C 1.37878 * 119.99664 * 94.78821 * 5 3 2 8 8 N 1.31511 * 119.99951 * 186.46147 * 7 5 3 9 9 Si 1.86801 * 120.00026 * 6.46276 * 7 5 3 10 10 H 1.48502 * 109.46951 * 86.58640 * 9 7 5 11 11 H 1.48508 * 109.46916 * 206.58519 * 9 7 5 12 12 H 1.48494 * 109.47277 * 326.58320 * 9 7 5 13 13 N 1.46902 * 109.47086 * 65.51986 * 3 2 1 14 14 C 1.46898 * 110.99327 * 248.44214 * 13 3 2 15 15 C 1.50706 * 109.46830 * 183.06855 * 14 13 3 16 16 C 1.38654 * 126.17201 * 259.69342 * 15 14 13 17 17 N 1.31425 * 108.98418 * 179.85573 * 16 15 14 18 18 N 1.39933 * 108.83914 * 0.39943 * 17 16 15 19 19 C 1.36549 * 132.55837 * 179.71716 * 18 17 16 20 20 C 1.35603 * 119.11108 * 180.02562 * 19 18 17 21 21 Br 1.89092 * 120.28340 * 180.02562 * 20 19 18 22 22 C 1.40316 * 119.42900 * 359.97438 * 20 19 18 23 23 N 1.31204 * 120.27470 * 0.02562 * 22 20 19 24 24 C 1.33976 * 120.83046 * 359.97438 * 23 22 20 25 25 H 1.09000 * 109.47198 * 56.29556 * 1 2 3 26 26 H 1.09004 * 109.47415 * 176.29547 * 1 2 3 27 27 H 1.09001 * 109.47718 * 296.29435 * 1 2 3 28 28 H 1.08994 * 109.47253 * 240.00067 * 2 1 3 29 29 H 1.09004 * 109.47149 * 119.99381 * 2 1 3 30 30 H 0.97000 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.00894 * 111.00052 * 124.48946 * 13 3 2 32 32 H 1.08998 * 109.47169 * 303.06223 * 14 13 3 33 33 H 1.08996 * 109.47364 * 63.06864 * 14 13 3 34 34 H 1.08000 * 125.50384 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.44935 * 359.97438 * 19 18 17 36 36 H 1.08005 * 119.85906 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5981 1.9841 -0.8365 5 6 3.5408 1.4448 -0.1366 6 1 4.1629 1.3332 0.7391 7 6 4.1195 1.5835 -1.3803 8 7 5.4215 1.4585 -1.5173 9 14 3.0543 1.9491 -2.8707 10 1 2.8596 3.4163 -2.9920 11 1 3.7216 1.4355 -4.0940 12 1 1.7353 1.2861 -2.7110 13 7 1.6620 2.0955 1.2605 14 6 0.6561 3.1411 1.0307 15 6 0.3495 3.8378 2.3314 16 6 -0.7501 3.6070 3.1439 17 7 -0.6802 4.3965 4.1923 18 7 0.4740 5.1812 4.0909 19 6 1.0067 6.1485 4.8941 20 6 2.1660 6.7475 4.5254 21 35 2.9333 8.0905 5.6132 22 6 2.7919 6.3614 3.3305 23 7 2.2596 5.4291 2.5762 24 6 1.1146 4.8303 2.9301 25 1 -0.3633 0.5703 -0.8549 26 1 -0.3634 -1.0255 -0.0664 27 1 -0.3634 0.4552 0.9213 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8288 1.5565 -2.3922 31 1 2.4722 2.4703 1.7307 32 1 1.0421 3.8651 0.3130 33 1 -0.2543 2.6892 0.6371 34 1 -1.5358 2.8925 2.9479 35 1 0.5109 6.4333 5.8103 36 1 3.7158 6.8336 3.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602613245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:02 Heat of formation + Delta-G solvation = 121.559219 kcal Electronic energy + Delta-G solvation = -20831.714508 eV Core-core repulsion = 17592.409877 eV Total energy + Delta-G solvation = -3239.304630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45396 -38.33178 -36.44308 -34.47461 -32.79512 -32.23068 -31.58718 -29.90709 -29.11732 -27.03116 -25.08169 -24.34275 -22.84045 -22.32352 -20.76239 -19.43298 -18.40208 -17.39167 -17.04402 -16.26065 -16.18776 -15.09984 -14.50255 -14.10935 -13.90842 -13.75405 -13.43397 -13.22776 -13.03100 -12.74980 -12.34276 -12.13004 -11.94302 -11.72356 -11.33760 -11.13987 -10.95529 -10.90121 -10.78455 -10.52475 -10.16228 -9.94399 -9.79538 -9.71167 -9.46294 -9.01539 -8.51805 -7.90825 -7.25857 -6.08823 -4.08565 0.25650 0.54218 0.84214 2.01125 2.47978 3.20248 3.28471 3.36830 3.38987 3.74578 3.88634 3.99614 4.41287 4.61331 4.96420 4.99989 5.19577 5.22224 5.46019 5.64651 5.77557 6.01893 6.11678 6.13696 6.24384 6.28597 6.33753 6.46343 6.66816 6.81106 7.11594 7.15606 7.26618 7.47035 7.51570 7.66211 8.03178 8.45763 8.70127 8.99317 9.55849 11.04419 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.003277 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.080603 B = 8541.920278 C = 9857.872853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C 0.182 3.818 4 H 0.019 0.981 5 C -0.527 4.527 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.680 5.680 14 C 0.139 3.861 15 C -0.188 4.188 16 C 0.108 3.892 17 N -0.309 5.309 18 N -0.316 5.316 19 C 0.203 3.797 20 C -0.208 4.208 21 Br -0.001 7.001 22 C 0.195 3.805 23 N -0.426 5.426 24 C 0.249 3.751 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.342 0.658 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.202 0.798 35 H 0.183 0.817 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 14.325 14.506 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C 0.074 3.926 4 H 0.036 0.964 5 C -0.566 4.566 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.311 5.311 14 C 0.008 3.992 15 C -0.201 4.201 16 C -0.071 4.071 17 N -0.133 5.133 18 N -0.088 5.088 19 C 0.065 3.935 20 C -0.295 4.295 21 Br 0.082 6.918 22 C 0.007 3.993 23 N -0.136 5.136 24 C 0.024 3.976 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.218 0.782 35 H 0.200 0.800 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.820 14.143 15.136 22.925 hybrid contribution 0.049 0.669 -1.408 1.560 sum -9.771 14.812 13.728 22.435 Atomic orbital electron populations 1.21825 0.98583 0.99292 1.00696 1.21631 0.92644 0.99194 1.00497 1.19618 0.95198 0.91012 0.86757 0.96350 1.21333 0.89687 1.50542 0.95000 0.90618 1.25014 0.94740 0.94326 0.98598 1.69916 1.09956 1.49463 1.24063 0.86931 0.81400 0.79056 0.82697 1.20289 1.21476 1.18635 1.60888 1.15804 1.29093 1.25362 1.20229 0.97279 0.92316 0.89339 1.19960 0.96500 1.01060 1.02558 1.23866 0.97739 0.95767 0.89713 1.77896 1.00539 1.10755 1.24097 1.47104 1.18799 1.26117 1.16767 1.21780 0.91617 0.85280 0.94870 1.22234 1.00227 1.05226 1.01799 1.96796 1.82077 1.47407 1.65545 1.23408 0.98223 0.90352 0.87317 1.68391 1.07186 1.07894 1.30117 1.20575 0.91563 0.98436 0.87062 0.94482 0.94785 0.92608 0.93396 0.92659 0.92669 0.84018 0.94733 0.90807 0.78165 0.79960 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.26 37.15 0.34 -2.25 16 2 C -0.10 -2.17 5.59 -26.73 -0.15 -2.32 16 3 C 0.18 4.25 1.86 -68.86 -0.13 4.13 16 4 H 0.02 0.45 4.59 -51.93 -0.24 0.21 16 5 C -0.53 -14.63 8.70 -34.44 -0.30 -14.93 16 6 H 0.08 2.31 8.01 -52.49 -0.42 1.89 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.87 21.47 27.09 -169.99 -4.60 16.87 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.16 6.68 56.52 0.38 -5.78 16 13 N -0.68 -14.07 5.99 -109.21 -0.65 -14.73 16 14 C 0.14 2.48 5.74 -4.97 -0.03 2.45 16 15 C -0.19 -3.02 5.66 -104.23 -0.59 -3.61 16 16 C 0.11 1.46 11.88 -17.57 -0.21 1.25 16 17 N -0.31 -4.38 12.66 30.47 0.39 -4.00 16 18 N -0.32 -4.42 3.90 -12.18 -0.05 -4.47 16 19 C 0.20 2.14 11.04 -16.39 -0.18 1.96 16 20 C -0.21 -2.07 6.21 -39.74 -0.25 -2.32 16 21 Br 0.00 -0.01 33.72 -68.01 -2.29 -2.30 16 22 C 0.20 2.31 11.04 -17.04 -0.19 2.12 16 23 N -0.43 -6.77 10.48 -12.20 -0.13 -6.90 16 24 C 0.25 4.00 7.86 -155.53 -1.22 2.78 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.93 7.35 -51.93 -0.38 0.55 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.34 7.66 8.01 -39.30 -0.31 7.35 16 32 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.07 1.19 7.25 -51.93 -0.38 0.82 16 34 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -31.86 327.34 -8.90 -40.76 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.27 Total: 4.93 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.00 Total: -8.66 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.33 Total: -56.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.60 Total: 16.87 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.86 -8.90 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.315 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds