Wall clock time and date at job start Tue Mar 31 2020 21:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46968 * 2 1 4 4 H 1.09001 * 109.46767 * 305.51399 * 3 2 1 5 5 C 1.50705 * 109.46890 * 185.51672 * 3 2 1 6 6 H 1.07996 * 120.00248 * 275.06244 * 5 3 2 7 7 C 1.37878 * 119.99664 * 94.78821 * 5 3 2 8 8 N 1.31511 * 119.99951 * 186.46147 * 7 5 3 9 9 Si 1.86801 * 120.00026 * 6.46276 * 7 5 3 10 10 H 1.48502 * 109.46951 * 86.58640 * 9 7 5 11 11 H 1.48508 * 109.46916 * 206.58519 * 9 7 5 12 12 H 1.48494 * 109.47277 * 326.58320 * 9 7 5 13 13 N 1.46902 * 109.47086 * 65.51986 * 3 2 1 14 14 C 1.46898 * 110.99327 * 248.44214 * 13 3 2 15 15 C 1.50706 * 109.46830 * 183.06855 * 14 13 3 16 16 C 1.38654 * 126.17201 * 259.69342 * 15 14 13 17 17 N 1.31425 * 108.98418 * 179.85573 * 16 15 14 18 18 N 1.39933 * 108.83914 * 0.39943 * 17 16 15 19 19 C 1.36549 * 132.55837 * 179.71716 * 18 17 16 20 20 C 1.35603 * 119.11108 * 180.02562 * 19 18 17 21 21 Br 1.89092 * 120.28340 * 180.02562 * 20 19 18 22 22 C 1.40316 * 119.42900 * 359.97438 * 20 19 18 23 23 N 1.31204 * 120.27470 * 0.02562 * 22 20 19 24 24 C 1.33976 * 120.83046 * 359.97438 * 23 22 20 25 25 H 1.09000 * 109.47198 * 56.29556 * 1 2 3 26 26 H 1.09004 * 109.47415 * 176.29547 * 1 2 3 27 27 H 1.09001 * 109.47718 * 296.29435 * 1 2 3 28 28 H 1.08994 * 109.47253 * 240.00067 * 2 1 3 29 29 H 1.09004 * 109.47149 * 119.99381 * 2 1 3 30 30 H 0.97000 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.00894 * 111.00052 * 124.48946 * 13 3 2 32 32 H 1.08998 * 109.47169 * 303.06223 * 14 13 3 33 33 H 1.08996 * 109.47364 * 63.06864 * 14 13 3 34 34 H 1.08000 * 125.50384 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.44935 * 359.97438 * 19 18 17 36 36 H 1.08005 * 119.85906 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5981 1.9841 -0.8365 5 6 3.5408 1.4448 -0.1366 6 1 4.1629 1.3332 0.7391 7 6 4.1195 1.5835 -1.3803 8 7 5.4215 1.4585 -1.5173 9 14 3.0543 1.9491 -2.8707 10 1 2.8596 3.4163 -2.9920 11 1 3.7216 1.4355 -4.0940 12 1 1.7353 1.2861 -2.7110 13 7 1.6620 2.0955 1.2605 14 6 0.6561 3.1411 1.0307 15 6 0.3495 3.8378 2.3314 16 6 -0.7501 3.6070 3.1439 17 7 -0.6802 4.3965 4.1923 18 7 0.4740 5.1812 4.0909 19 6 1.0067 6.1485 4.8941 20 6 2.1660 6.7475 4.5254 21 35 2.9333 8.0905 5.6132 22 6 2.7919 6.3614 3.3305 23 7 2.2596 5.4291 2.5762 24 6 1.1146 4.8303 2.9301 25 1 -0.3633 0.5703 -0.8549 26 1 -0.3634 -1.0255 -0.0664 27 1 -0.3634 0.4552 0.9213 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8288 1.5565 -2.3922 31 1 2.4722 2.4703 1.7307 32 1 1.0421 3.8651 0.3130 33 1 -0.2543 2.6892 0.6371 34 1 -1.5358 2.8925 2.9479 35 1 0.5109 6.4333 5.8103 36 1 3.7158 6.8336 3.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602613245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:02 Heat of formation + Delta-G solvation = 100.301836 kcal Electronic energy + Delta-G solvation = -20832.636297 eV Core-core repulsion = 17592.409877 eV Total energy + Delta-G solvation = -3240.226420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47786 -39.35057 -38.10977 -35.60082 -34.40419 -33.60458 -33.02182 -30.96761 -30.33177 -28.70283 -26.05749 -25.79788 -24.27749 -23.66769 -21.89880 -21.19228 -19.53742 -19.04727 -18.37674 -17.31746 -17.18979 -16.83358 -15.83274 -15.61212 -15.23936 -15.10197 -14.71896 -14.64897 -14.21262 -14.04862 -13.79580 -13.67157 -13.45132 -12.99939 -12.86021 -12.76159 -12.34733 -12.29584 -11.89151 -11.72188 -11.69330 -11.65173 -11.41021 -11.02536 -10.93113 -10.67399 -10.38637 -9.13942 -8.82312 -8.30166 -6.34145 -0.65020 -0.46569 0.02921 1.06538 1.33122 1.34043 1.45103 1.45682 2.15012 2.33272 2.78472 2.92920 3.05910 3.17321 3.71575 3.80705 3.92307 4.11676 4.16424 4.46692 4.50834 4.64462 4.73669 4.75762 4.78185 4.91299 5.00812 5.13944 5.29458 5.38371 5.45497 5.50465 5.60092 5.84415 6.05028 6.23487 6.45322 6.53523 6.71006 6.86285 7.34430 8.86825 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.003277 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.080603 B = 8541.920278 C = 9857.872853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C 0.188 3.812 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.031 0.969 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.935 3.065 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.239 1.239 13 N -0.672 5.672 14 C 0.147 3.853 15 C -0.223 4.223 16 C 0.120 3.880 17 N -0.320 5.320 18 N -0.321 5.321 19 C 0.203 3.797 20 C -0.206 4.206 21 Br 0.030 6.970 22 C 0.203 3.797 23 N -0.480 5.480 24 C 0.239 3.761 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.327 0.673 32 H 0.010 0.990 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.217 0.783 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 15.324 15.235 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C 0.079 3.921 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.049 0.951 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.163 1.163 13 N -0.302 5.302 14 C 0.017 3.983 15 C -0.236 4.236 16 C -0.058 4.058 17 N -0.143 5.143 18 N -0.092 5.092 19 C 0.066 3.934 20 C -0.292 4.292 21 Br 0.113 6.887 22 C 0.017 3.983 23 N -0.191 5.191 24 C 0.013 3.987 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.028 0.972 33 H 0.114 0.886 34 H 0.251 0.749 35 H 0.234 0.766 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.314 15.163 15.903 25.188 hybrid contribution 0.971 0.509 -1.429 1.801 sum -11.343 15.672 14.474 24.161 Atomic orbital electron populations 1.21715 0.94925 1.01111 1.01635 1.21539 0.95883 0.97225 0.99337 1.19528 0.92059 0.92622 0.87930 0.96428 1.21606 0.92077 1.49645 0.93527 0.95115 1.25862 0.95931 0.94255 1.01897 1.70064 1.12045 1.51462 1.24959 0.85909 0.80456 0.79133 0.78574 1.19792 1.21118 1.16268 1.60903 1.15469 1.30264 1.23538 1.20150 0.96728 0.91106 0.90301 1.19826 0.98350 1.02582 1.02835 1.24318 0.97438 0.95553 0.88539 1.77851 1.00781 1.11197 1.24464 1.47264 1.18680 1.26639 1.16653 1.22458 0.91645 0.84029 0.95312 1.22327 0.99907 1.05508 1.01429 1.96842 1.81618 1.45852 1.64404 1.23921 0.98353 0.88721 0.87298 1.68408 1.08262 1.10174 1.32224 1.20735 0.91706 0.98476 0.87796 0.93805 0.92534 0.91414 0.94814 0.93726 0.92575 0.85672 0.97163 0.88628 0.74930 0.76628 0.77640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.26 71.98 0.67 -3.75 16 2 C -0.10 -4.27 5.59 30.59 0.17 -4.09 16 3 C 0.19 8.78 1.86 44.17 0.08 8.86 16 4 H 0.02 0.84 4.59 -2.39 -0.01 0.83 16 5 C -0.53 -30.57 8.70 25.60 0.22 -30.35 16 6 H 0.03 1.99 8.01 -2.91 -0.02 1.97 16 7 C 0.02 1.09 5.47 84.66 0.46 1.56 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.94 44.56 27.09 68.60 1.86 46.42 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.24 -10.46 6.68 99.48 0.66 -9.80 16 13 N -0.67 -28.07 5.99 -499.44 -2.99 -31.07 16 14 C 0.15 5.19 5.74 85.56 0.49 5.68 16 15 C -0.22 -7.05 5.66 -19.61 -0.11 -7.16 16 16 C 0.12 3.04 11.88 84.85 1.01 4.05 16 17 N -0.32 -8.50 12.66 -57.50 -0.73 -9.22 16 18 N -0.32 -8.59 3.90 -192.43 -0.75 -9.34 16 19 C 0.20 3.88 11.04 83.35 0.92 4.80 16 20 C -0.21 -3.74 6.21 22.17 0.14 -3.60 16 21 Br 0.03 0.38 33.72 -20.37 -0.69 -0.30 16 22 C 0.20 4.69 11.04 85.29 0.94 5.63 16 23 N -0.48 -15.45 10.48 -192.50 -2.02 -17.47 16 24 C 0.24 7.66 7.86 133.15 1.05 8.71 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.03 7.35 -2.39 -0.02 2.01 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.33 15.31 8.01 -89.70 -0.72 14.59 16 32 H 0.01 0.41 8.10 -2.39 -0.02 0.39 16 33 H 0.10 2.90 7.25 -2.39 -0.02 2.88 16 34 H 0.23 3.94 8.06 -2.91 -0.02 3.91 16 35 H 0.22 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.21 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -71.95 327.34 1.38 -70.57 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.35 Total: 19.30 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.04 Total: -9.66 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.19 Total: -126.33 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.86 Total: 46.42 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -0.69 Total: -0.30 kcal Total: -71.95 1.38 -70.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.876 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds