Wall clock time and date at job start Tue Mar 31 2020 20:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34809 * 116.99930 * 179.97438 * 13 12 10 15 15 O 1.21557 * 120.00028 * 0.02562 * 14 13 12 16 16 C 1.47122 * 119.99719 * 179.97438 * 14 13 12 17 17 C 1.35216 * 122.43097 * 179.73435 * 16 14 13 18 18 S 1.70999 * 109.16594 * 179.86691 * 17 16 14 19 19 C 1.76000 * 90.60735 * 0.33119 * 18 17 16 20 20 C 1.47164 * 125.31479 * 179.78969 * 19 18 17 21 21 C 1.35084 * 125.28557 * 359.73620 * 20 19 18 22 22 C 1.37780 * 114.67976 * 179.79509 * 21 20 19 23 23 C 1.33731 * 115.09615 * 0.50817 * 22 21 20 24 24 S 1.75865 * 109.77595 * 359.72701 * 23 22 21 25 25 N 1.30086 * 109.36102 * 359.80520 * 19 18 17 26 26 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 29 29 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 30 30 H 1.08008 * 125.41580 * 0.02562 * 17 16 14 31 31 H 1.07999 * 122.66257 * 0.02562 * 21 20 19 32 32 H 1.08005 * 122.45019 * 180.21288 * 22 21 20 33 33 H 1.07999 * 125.11257 * 179.75170 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6724 -7.2123 -0.0027 15 8 0.4674 -7.3716 -0.0028 16 6 2.5688 -8.3789 -0.0037 17 6 2.1055 -9.6493 0.0015 18 16 3.4307 -10.7300 -0.0054 19 6 4.5575 -9.3780 -0.0050 20 6 6.0246 -9.4933 -0.0053 21 6 6.7161 -10.6537 -0.0008 22 6 8.0861 -10.5071 -0.0066 23 6 8.5211 -9.2425 -0.0049 24 16 7.1498 -8.1415 -0.0035 25 7 3.8908 -8.2610 -0.0041 26 1 -0.4851 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6170 -4.9201 -0.8920 29 1 0.6177 -4.9213 0.8880 30 1 1.0642 -9.9357 0.0064 31 1 6.2334 -11.6199 0.0031 32 1 8.7593 -11.3516 -0.0073 33 1 9.5586 -8.9425 -0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:18 Heat of formation + Delta-G solvation = -33.697413 kcal Electronic energy + Delta-G solvation = -22425.692370 eV Core-core repulsion = 18670.753724 eV Total energy + Delta-G solvation = -3754.938646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76428 -39.37755 -38.12810 -37.89422 -36.11493 -33.95705 -32.20601 -31.33957 -29.32884 -28.63682 -26.27889 -24.94006 -24.20262 -22.34480 -20.42572 -19.86333 -19.54535 -18.56702 -18.03922 -17.73556 -16.77725 -16.48182 -16.44725 -15.76032 -15.52530 -15.03854 -14.69886 -14.39832 -13.91901 -13.91742 -13.59850 -13.18322 -13.08316 -13.03930 -12.53928 -12.27504 -12.26094 -11.97315 -11.59189 -11.12654 -10.98769 -10.73837 -10.41557 -10.38532 -10.35977 -10.27008 -10.16887 -9.74195 -9.57773 -8.78546 -8.51785 -8.47103 -8.04239 -6.46498 -3.88155 -0.28715 0.53600 0.69659 1.05381 1.53468 1.69987 1.80048 2.44663 2.70449 3.06394 3.14539 3.26093 3.33835 3.51138 3.78104 4.14630 4.44105 4.71706 4.75533 4.80007 5.03110 5.05759 5.11591 5.18225 5.35888 5.54806 5.66518 5.71473 5.88482 6.00648 6.08112 6.49056 7.07597 7.51624 7.79047 7.98916 8.52901 9.11175 9.43368 9.93814 10.70989 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002573 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.949037 B =10880.206783 C =12814.009765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.107 0.893 9 N -0.555 5.555 10 C 0.440 3.560 11 O -0.570 6.570 12 C 0.058 3.942 13 O -0.301 6.301 14 C 0.539 3.461 15 O -0.504 6.504 16 C 0.043 3.957 17 C -0.213 4.213 18 S 0.205 5.795 19 C 0.118 3.882 20 C -0.141 4.141 21 C -0.109 4.109 22 C -0.140 4.140 23 C -0.218 4.218 24 S 0.219 5.781 25 N -0.409 5.409 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.198 0.802 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.950 -25.262 0.000 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.225 3.775 11 O -0.453 6.453 12 C -0.020 4.020 13 O -0.213 6.213 14 C 0.380 3.620 15 O -0.393 6.393 16 C -0.092 4.092 17 C -0.355 4.355 18 S 0.463 5.537 19 C -0.160 4.160 20 C -0.262 4.262 21 C -0.145 4.145 22 C -0.170 4.170 23 C -0.356 4.356 24 S 0.485 5.515 25 N -0.123 5.123 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.215 0.785 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.454 -24.048 -0.002 26.222 hybrid contribution -1.007 0.102 0.002 1.012 sum 9.447 -23.946 0.000 25.742 Atomic orbital electron populations 1.69622 1.05990 1.28306 1.50008 1.25304 0.95686 0.99831 0.97023 0.85748 0.79746 0.80792 0.77761 1.19069 1.20655 1.20650 1.19778 0.93508 0.81723 1.47874 0.87563 1.41697 1.09336 1.04033 1.64159 1.19280 0.88363 0.83990 0.85914 1.90587 1.13310 1.86680 1.54733 1.22860 0.90894 0.84591 1.03649 1.86748 1.39271 1.13226 1.82092 1.19908 0.85783 0.83199 0.73096 1.90872 1.14906 1.86923 1.46640 1.19031 0.88804 0.91708 1.09658 1.26617 1.06973 0.95818 1.06132 1.83731 0.94555 1.10278 1.65164 1.24780 0.95761 0.90338 1.05078 1.21862 0.91578 0.98536 1.14228 1.20281 0.93918 0.97457 1.02838 1.19932 0.94725 0.97460 1.04848 1.26179 1.03750 0.97226 1.08492 1.85131 0.92993 1.05683 1.67711 1.67285 1.05125 1.27006 1.12901 0.91735 0.77187 0.89313 0.89322 0.78493 0.83992 0.83748 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.11 3.13 7.16 -52.48 -0.38 2.75 16 9 N -0.55 -14.37 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 11.02 7.86 -10.99 -0.09 10.94 16 11 O -0.57 -16.50 16.08 -14.12 -0.23 -16.72 16 12 C 0.06 1.16 5.96 36.01 0.21 1.38 16 13 O -0.30 -6.25 9.67 -47.47 -0.46 -6.71 16 14 C 0.54 9.64 7.93 34.34 0.27 9.91 16 15 O -0.50 -9.11 16.44 -19.31 -0.32 -9.43 16 16 C 0.04 0.65 6.64 -84.95 -0.56 0.09 16 17 C -0.21 -2.35 10.56 29.66 0.31 -2.03 16 18 S 0.20 1.73 22.75 -107.50 -2.45 -0.72 16 19 C 0.12 1.44 7.44 -14.67 -0.11 1.33 16 20 C -0.14 -1.53 6.42 -37.08 -0.24 -1.77 16 21 C -0.11 -0.87 9.87 -40.87 -0.40 -1.27 16 22 C -0.14 -0.97 10.16 -41.33 -0.42 -1.39 16 23 C -0.22 -1.67 11.23 29.15 0.33 -1.35 16 24 S 0.22 2.44 23.29 -107.50 -2.50 -0.07 16 25 N -0.41 -6.47 10.56 -8.30 -0.09 -6.56 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.20 1.74 7.99 -52.48 -0.42 1.32 16 31 H 0.14 0.78 7.89 -52.49 -0.41 0.37 16 32 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 33 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -34.66 338.89 -8.58 -43.24 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.36 Total: 6.19 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -0.93 Total: 7.81 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.58 Total: -44.71 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.00 Total: -32.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -4.95 Total: -0.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.66 -8.58 -43.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.546 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds