Wall clock time and date at job start Tue Mar 31 2020 20:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34809 * 116.99930 * 179.97438 * 13 12 10 15 15 O 1.21557 * 120.00028 * 0.02562 * 14 13 12 16 16 C 1.47122 * 119.99719 * 179.97438 * 14 13 12 17 17 C 1.35216 * 122.43097 * 179.73435 * 16 14 13 18 18 S 1.70999 * 109.16594 * 179.86691 * 17 16 14 19 19 C 1.76000 * 90.60735 * 0.33119 * 18 17 16 20 20 C 1.47164 * 125.31479 * 179.78969 * 19 18 17 21 21 C 1.35084 * 125.28557 * 359.73620 * 20 19 18 22 22 C 1.37780 * 114.67976 * 179.79509 * 21 20 19 23 23 C 1.33731 * 115.09615 * 0.50817 * 22 21 20 24 24 S 1.75865 * 109.77595 * 359.72701 * 23 22 21 25 25 N 1.30086 * 109.36102 * 359.80520 * 19 18 17 26 26 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 29 29 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 30 30 H 1.08008 * 125.41580 * 0.02562 * 17 16 14 31 31 H 1.07999 * 122.66257 * 0.02562 * 21 20 19 32 32 H 1.08005 * 122.45019 * 180.21288 * 22 21 20 33 33 H 1.07999 * 125.11257 * 179.75170 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6724 -7.2123 -0.0027 15 8 0.4674 -7.3716 -0.0028 16 6 2.5688 -8.3789 -0.0037 17 6 2.1055 -9.6493 0.0015 18 16 3.4307 -10.7300 -0.0054 19 6 4.5575 -9.3780 -0.0050 20 6 6.0246 -9.4933 -0.0053 21 6 6.7161 -10.6537 -0.0008 22 6 8.0861 -10.5071 -0.0066 23 6 8.5211 -9.2425 -0.0049 24 16 7.1498 -8.1415 -0.0035 25 7 3.8908 -8.2610 -0.0041 26 1 -0.4851 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6170 -4.9201 -0.8920 29 1 0.6177 -4.9213 0.8880 30 1 1.0642 -9.9357 0.0064 31 1 6.2334 -11.6199 0.0031 32 1 8.7593 -11.3516 -0.0073 33 1 9.5586 -8.9425 -0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:17 Heat of formation + Delta-G solvation = -57.199998 kcal Electronic energy + Delta-G solvation = -22426.711518 eV Core-core repulsion = 18670.753724 eV Total energy + Delta-G solvation = -3755.957794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00535 -40.62938 -39.90476 -38.64119 -37.61945 -36.06941 -33.45579 -33.03341 -30.37342 -30.05941 -27.46144 -26.44194 -25.39873 -23.31563 -21.50834 -21.32512 -20.89336 -20.11492 -19.40376 -18.64626 -18.11625 -17.89709 -17.77930 -17.23746 -16.61529 -16.40708 -16.22665 -15.84049 -15.46148 -15.34004 -14.73673 -14.31138 -14.12144 -13.78106 -13.75341 -13.65723 -13.59462 -13.25346 -13.03437 -12.96322 -12.49592 -12.13359 -12.07917 -11.96108 -11.67335 -11.61555 -11.21968 -11.03011 -10.55687 -10.52435 -10.14514 -9.56773 -9.25961 -8.54837 -6.05613 -1.07587 -0.23350 -0.19117 0.18103 0.73241 0.80085 1.11901 1.32487 1.34636 1.43359 1.57680 1.71060 1.83189 2.02907 2.27388 2.60964 3.04048 3.10112 3.48611 3.78854 3.98173 4.01894 4.08891 4.17658 4.18791 4.41212 4.49953 4.61892 5.04398 5.05810 5.25239 5.34680 5.46684 5.85496 6.11405 6.43653 6.55420 7.00295 7.36077 7.90637 8.62570 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002573 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.949037 B =10880.206783 C =12814.009765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.068 3.932 13 O -0.330 6.330 14 C 0.538 3.462 15 O -0.514 6.514 16 C 0.002 3.998 17 C -0.207 4.207 18 S 0.328 5.672 19 C 0.093 3.907 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.137 4.137 23 C -0.195 4.195 24 S 0.114 5.886 25 N -0.463 5.463 26 H 0.282 0.718 27 H 0.401 0.599 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.219 0.781 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.304 -28.251 0.001 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.503 6.503 12 C -0.009 4.009 13 O -0.244 6.244 14 C 0.381 3.619 15 O -0.404 6.404 16 C -0.132 4.132 17 C -0.350 4.350 18 S 0.587 5.413 19 C -0.183 4.183 20 C -0.286 4.286 21 C -0.122 4.122 22 C -0.166 4.166 23 C -0.333 4.333 24 S 0.379 5.621 25 N -0.178 5.178 26 H 0.091 0.909 27 H 0.235 0.765 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.236 0.764 31 H 0.192 0.808 32 H 0.201 0.799 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.764 -27.068 -0.001 29.130 hybrid contribution -1.055 0.789 0.002 1.318 sum 9.709 -26.279 0.001 28.015 Atomic orbital electron populations 1.69675 1.06927 1.29734 1.49129 1.26142 0.96628 1.02572 0.95576 0.84790 0.77999 0.76466 0.78576 1.19697 1.19253 1.19241 1.19749 0.92885 0.83370 1.50706 0.89992 1.41714 1.09538 1.04051 1.64060 1.20064 0.88063 0.85381 0.84284 1.90549 1.15574 1.87643 1.56580 1.22651 0.90115 0.82383 1.05731 1.86743 1.40178 1.14523 1.82927 1.20406 0.86374 0.82783 0.72352 1.90835 1.15186 1.86872 1.47467 1.18833 0.88783 0.91761 1.13827 1.27053 1.09364 0.95245 1.03294 1.83201 0.90401 1.05847 1.61854 1.25129 0.96911 0.91626 1.04664 1.21933 0.91057 0.98527 1.17073 1.20746 0.94381 0.97572 0.99472 1.20393 0.94815 0.98091 1.03321 1.26437 1.03263 0.96345 1.07251 1.85486 0.96804 1.09502 1.70352 1.67210 1.05742 1.29836 1.15041 0.90881 0.76469 0.87084 0.87093 0.76377 0.80792 0.79909 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.62 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 8 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 9 N -0.56 -29.90 5.29 -306.98 -1.62 -31.52 16 10 C 0.44 22.89 7.86 87.66 0.69 23.57 16 11 O -0.62 -37.98 16.08 15.72 0.25 -37.73 16 12 C 0.07 2.84 5.96 71.24 0.42 3.26 16 13 O -0.33 -14.44 9.67 -50.82 -0.49 -14.93 16 14 C 0.54 19.88 7.93 70.15 0.56 20.44 16 15 O -0.51 -18.66 16.44 19.65 0.32 -18.34 16 16 C 0.00 0.08 6.64 40.64 0.27 0.35 16 17 C -0.21 -4.19 10.56 67.12 0.71 -3.48 16 18 S 0.33 4.49 22.75 -56.49 -1.29 3.20 16 19 C 0.09 2.24 7.44 87.30 0.65 2.89 16 20 C -0.17 -3.51 6.42 23.89 0.15 -3.35 16 21 C -0.09 -1.09 9.87 21.43 0.21 -0.88 16 22 C -0.14 -1.43 10.16 21.14 0.21 -1.21 16 23 C -0.20 -2.69 11.23 66.80 0.75 -1.94 16 24 S 0.11 2.71 23.29 -56.49 -1.32 1.40 16 25 N -0.46 -15.31 10.56 -180.16 -1.90 -17.22 16 26 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.40 20.13 7.90 -92.71 -0.73 19.40 16 28 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 29 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 30 H 0.22 3.29 7.99 -2.91 -0.02 3.26 16 31 H 0.17 1.03 7.89 -2.91 -0.02 1.01 16 32 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -80.63 338.89 2.64 -77.99 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.47 Total: 20.50 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.91 Total: 20.74 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.24 Total: -98.08 kcal Atomic # 8 Polarization: -71.09 SS G_CDS: 0.08 Total: -71.00 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -2.60 Total: 4.60 kcal Total: -80.63 2.64 -77.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.790 kcal (2) G-P(sol) polarization free energy of solvation -80.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds