Wall clock time and date at job start Tue Mar 31 2020 21:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47228 * 269.99890 * 3 2 1 5 5 H 1.48510 * 109.47114 * 30.00045 * 3 2 1 6 6 H 1.48501 * 109.46959 * 149.99696 * 3 2 1 7 7 C 1.38953 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00026 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99733 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00000 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00372 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.34705 * 116.99709 * 179.97438 * 13 12 10 15 15 O 1.21474 * 120.00353 * 0.02562 * 14 13 12 16 16 C 1.47744 * 120.00003 * 179.97438 * 14 13 12 17 17 C 1.39374 * 120.08072 * 180.02562 * 16 14 13 18 18 C 1.39327 * 119.69957 * 179.97438 * 17 16 14 19 19 C 1.47743 * 120.07596 * 179.97438 * 18 17 16 20 20 O 1.21468 * 120.00440 * 0.02562 * 19 18 17 21 21 O 1.34711 * 120.00226 * 180.02562 * 19 18 17 22 22 C 1.39763 * 119.85031 * 0.25390 * 18 17 16 23 23 C 1.38053 * 120.14627 * 359.47060 * 22 18 17 24 24 N 1.48021 * 119.84618 * 180.27614 * 23 22 18 25 25 O 1.21805 * 119.99965 * 180.27642 * 24 23 22 26 26 O 1.21795 * 120.00206 * 0.27476 * 24 23 22 27 27 C 1.38093 * 120.30957 * 0.55304 * 23 22 18 28 28 H 0.97001 * 119.99792 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00591 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46902 * 59.99320 * 12 10 9 31 31 H 1.08999 * 109.46599 * 299.99579 * 12 10 9 32 32 H 1.08009 * 120.14683 * 0.02562 * 17 16 14 33 33 H 0.96700 * 117.00324 * 180.02562 * 21 19 18 34 34 H 1.07995 * 119.92772 * 179.74044 * 22 18 17 35 35 H 1.07993 * 119.92883 * 179.72252 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3906 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0022 13 8 2.1870 -5.9666 0.0027 14 6 1.6720 -7.2114 0.0038 15 8 0.4678 -7.3705 0.0038 16 6 2.5719 -8.3831 0.0037 17 6 2.0409 -9.6717 0.0043 18 6 2.8969 -10.7711 0.0038 19 6 2.3430 -12.1407 0.0050 20 8 1.1401 -12.3095 0.0060 21 8 3.1719 -13.2026 0.0049 22 6 4.2807 -10.5753 0.0080 23 6 4.7999 -9.2961 0.0017 24 7 6.2666 -9.0964 0.0000 25 8 6.7278 -7.9690 -0.0005 26 8 7.0124 -10.0594 -0.0008 27 6 3.9574 -8.2020 0.0027 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6171 -4.9212 -0.8880 31 1 0.6166 -4.9201 0.8920 32 1 0.9707 -9.8174 0.0044 33 1 2.7630 -14.0789 0.0054 34 1 4.9453 -11.4265 0.0118 35 1 4.3703 -7.2041 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738425605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:22 Heat of formation + Delta-G solvation = -176.662442 kcal Electronic energy + Delta-G solvation = -27470.780944 eV Core-core repulsion = 22824.137127 eV Total energy + Delta-G solvation = -4646.643817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58333 -41.32852 -40.64426 -39.26060 -38.19802 -36.88550 -36.81345 -36.44241 -34.08920 -32.87089 -32.82993 -31.45750 -28.67539 -27.07711 -25.74610 -25.34294 -24.28491 -22.15404 -21.45550 -19.77095 -19.49377 -19.16775 -18.60509 -18.18148 -17.92016 -17.87562 -17.37242 -16.92493 -16.67987 -16.57772 -16.34964 -15.84496 -15.53097 -14.66650 -14.43477 -14.20905 -14.02622 -13.64978 -13.34658 -13.06671 -12.95348 -12.51553 -12.26514 -12.22804 -11.86545 -11.69870 -11.67380 -11.40755 -11.38861 -11.18451 -10.97227 -10.68559 -10.48088 -10.46835 -10.35057 -10.25483 -9.66987 -8.63184 -8.15519 -6.56263 -3.98544 -0.75247 -0.51763 0.55410 0.86796 1.50535 1.95389 2.11261 2.33280 2.77389 3.09396 3.20774 3.26455 3.58807 3.64242 3.68630 3.88200 4.00803 4.05746 4.16153 4.39917 4.60377 4.83662 4.85743 5.04984 5.07519 5.20652 5.32737 5.36723 5.53516 5.73743 5.90666 5.94997 6.22901 7.12430 7.27221 7.38875 7.42400 7.86588 8.40016 9.00423 9.31085 9.80017 10.60702 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.002363 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.617242 B =11846.316244 C =13495.787351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.549 5.549 10 C 0.435 3.565 11 O -0.574 6.574 12 C 0.062 3.938 13 O -0.317 6.317 14 C 0.509 3.491 15 O -0.492 6.492 16 C -0.119 4.119 17 C 0.052 3.948 18 C -0.136 4.136 19 C 0.536 3.464 20 O -0.495 6.495 21 O -0.507 6.507 22 C 0.029 3.971 23 C -0.066 4.066 24 N 0.026 4.974 25 O -0.133 6.133 26 O -0.152 6.152 27 C 0.036 3.964 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.424 0.576 34 H 0.176 0.824 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -24.177 0.026 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.186 5.186 10 C 0.220 3.780 11 O -0.458 6.458 12 C -0.015 4.015 13 O -0.231 6.231 14 C 0.352 3.648 15 O -0.381 6.381 16 C -0.121 4.121 17 C 0.033 3.967 18 C -0.138 4.138 19 C 0.379 3.621 20 O -0.383 6.383 21 O -0.320 6.320 22 C 0.009 3.991 23 C -0.148 4.148 24 N 0.549 4.451 25 O -0.353 6.353 26 O -0.368 6.368 27 C 0.017 3.983 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.192 0.808 33 H 0.284 0.716 34 H 0.193 0.807 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.835 -23.787 0.033 23.955 hybrid contribution -0.346 0.348 -0.010 0.491 sum 2.488 -23.438 0.022 23.570 Atomic orbital electron populations 1.69611 1.06035 1.28616 1.49364 1.25331 0.95700 0.99954 0.96713 0.85786 0.79269 0.80285 0.78569 1.20197 1.20784 1.19184 1.19739 0.93530 0.81635 1.48323 0.87483 1.41692 1.09399 1.04057 1.63496 1.19224 0.88358 0.83936 0.86528 1.90586 1.13236 1.86652 1.55347 1.22909 0.90615 0.83972 1.04016 1.86562 1.40347 1.13553 1.82600 1.20534 0.86661 0.83732 0.73917 1.90897 1.15221 1.86803 1.45201 1.18924 0.91724 0.92147 1.09310 1.21814 1.02722 0.88830 0.83287 1.18723 0.92196 0.91265 1.11573 1.20192 0.84179 0.85011 0.72724 1.90981 1.15779 1.86447 1.45111 1.84511 1.43297 1.18602 1.85560 1.21545 0.95282 0.96530 0.85703 1.20896 0.81489 0.95725 1.16733 1.43401 1.02622 1.00978 0.98098 1.94666 1.78974 1.09443 1.52266 1.94555 1.55924 1.33068 1.53273 1.21847 0.91811 1.01012 0.83586 0.91544 0.77127 0.89018 0.89012 0.80794 0.71611 0.80655 0.79743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.42 13.05 55.50 0.72 -22.70 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.27 29.55 -169.99 -5.02 15.24 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.28 5.29 -10.96 -0.06 -13.33 16 10 C 0.43 9.86 7.86 -10.98 -0.09 9.77 16 11 O -0.57 -15.12 16.08 -14.12 -0.23 -15.35 16 12 C 0.06 1.06 5.95 36.01 0.21 1.28 16 13 O -0.32 -5.15 9.00 -47.18 -0.42 -5.57 16 14 C 0.51 6.88 7.90 34.62 0.27 7.15 16 15 O -0.49 -7.36 16.13 -19.25 -0.31 -7.67 16 16 C -0.12 -1.22 5.87 -105.03 -0.62 -1.84 16 17 C 0.05 0.44 9.14 -38.75 -0.35 0.09 16 18 C -0.14 -0.98 5.87 -105.04 -0.62 -1.60 16 19 C 0.54 3.72 8.27 34.62 0.29 4.00 16 20 O -0.50 -4.88 17.13 -19.24 -0.33 -5.21 16 21 O -0.51 -1.98 12.67 -40.52 -0.51 -2.50 16 22 C 0.03 0.20 9.12 -39.08 -0.36 -0.15 16 23 C -0.07 -0.62 6.84 -80.07 -0.55 -1.17 16 24 N 0.03 0.30 4.45 33.90 0.15 0.46 16 25 O -0.13 -1.82 18.43 -29.46 -0.54 -2.36 16 26 O -0.15 -1.77 18.43 -29.46 -0.54 -2.31 16 27 C 0.04 0.37 9.12 -39.08 -0.36 0.01 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.40 9.01 7.90 -40.82 -0.32 8.69 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.17 1.48 7.23 -52.48 -0.38 1.10 16 33 H 0.42 -0.17 9.11 45.56 0.42 0.24 16 34 H 0.18 0.94 7.13 -52.49 -0.37 0.56 16 35 H 0.19 2.07 7.13 -52.49 -0.37 1.70 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.76 342.88 -5.72 -39.48 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -1.39 Total: 6.80 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -2.40 Total: 9.86 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.82 Total: -35.58 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -2.89 Total: -40.98 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.76 -5.72 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.180 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds