Wall clock time and date at job start Tue Mar 31 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29312 * 1 3 3 Si 1.86799 * 120.00192 * 2 1 4 4 H 1.48507 * 109.46587 * 274.99715 * 3 2 1 5 5 H 1.48495 * 109.47150 * 34.99190 * 3 2 1 6 6 H 1.48497 * 109.47550 * 154.99948 * 3 2 1 7 7 C 1.46794 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99916 * 214.01515 * 7 2 1 9 9 N 1.33304 * 119.99699 * 34.01656 * 7 2 1 10 10 C 1.46492 * 120.00386 * 355.42122 * 9 7 2 11 11 C 1.50701 * 109.47318 * 274.46614 * 10 9 7 12 12 O 1.20823 * 119.99916 * 359.97438 * 11 10 9 13 13 O 1.34224 * 119.99747 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99761 * 175.42622 * 9 7 2 15 15 O 1.21512 * 119.99895 * 5.32960 * 14 9 7 16 16 C 1.47425 * 120.00346 * 185.33516 * 14 9 7 17 17 C 1.39869 * 120.08928 * 58.91499 * 16 14 9 18 18 C 1.38038 * 119.90013 * 179.97438 * 17 16 14 19 19 C 1.39639 * 119.98851 * 0.02562 * 18 17 16 20 20 C 1.38871 * 120.06470 * 359.96782 * 19 18 17 21 21 C 1.37751 * 120.22861 * 0.27971 * 20 19 18 22 22 N 1.48019 * 120.00110 * 179.70202 * 21 20 19 23 23 O 1.31704 * 120.00114 * 7.23422 * 22 21 20 24 24 O 1.31698 * 119.99918 * 187.23176 * 22 21 20 25 25 O 1.36329 * 108.57848 * 179.97438 * 19 18 17 26 26 C 1.43959 * 105.54397 * 17.34222 * 25 19 18 27 27 O 1.36535 * 131.43497 * 179.97438 * 18 17 16 28 28 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47010 * 34.46619 * 10 9 7 30 30 H 1.09005 * 109.47178 * 154.46279 * 10 9 7 31 31 H 0.96711 * 116.99971 * 179.97438 * 13 11 10 32 32 H 1.08002 * 120.05066 * 359.96082 * 17 16 14 33 33 H 1.08007 * 119.88195 * 180.02562 * 20 19 18 34 34 H 1.09002 * 110.56634 * 91.33116 * 26 25 19 35 35 H 1.08999 * 110.56792 * 214.18318 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.3690 2.1073 -1.3949 5 1 1.4814 2.6199 0.8029 6 1 3.5736 1.4120 0.5917 7 6 2.0271 -1.2713 0.0006 8 1 2.9685 -1.3510 0.5238 9 7 1.5316 -2.3272 -0.6448 10 6 0.2088 -2.2495 -1.2695 11 6 -0.8495 -2.5740 -0.2469 12 8 -0.5314 -2.8431 0.8872 13 8 -2.1454 -2.5651 -0.5964 14 6 2.2476 -3.4664 -0.7225 15 8 3.3004 -3.5643 -0.1237 16 6 1.7537 -4.5937 -1.5341 17 6 1.5186 -4.4228 -2.9022 18 6 1.0566 -5.4811 -3.6585 19 6 0.8242 -6.7198 -3.0571 20 6 1.0581 -6.8884 -1.6987 21 6 1.5142 -5.8349 -0.9374 22 7 1.7555 -6.0184 0.5114 23 8 1.6722 -7.2192 1.0459 24 8 2.0536 -4.9810 1.2659 25 8 0.3762 -7.5873 -4.0085 26 6 0.7251 -6.9895 -5.2708 27 8 0.7524 -5.5782 -4.9860 28 1 -0.4850 0.8400 -0.0004 29 1 0.0468 -1.2421 -1.6530 30 1 0.1522 -2.9642 -2.0905 31 1 -2.7878 -2.7801 0.0938 32 1 1.6981 -3.4642 -3.3662 33 1 0.8777 -7.8479 -1.2366 34 1 1.7060 -7.3332 -5.5991 35 1 -0.0315 -7.2134 -6.0227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:00 Heat of formation + Delta-G solvation = -87.771121 kcal Electronic energy + Delta-G solvation = -30639.877379 eV Core-core repulsion = 25997.088179 eV Total energy + Delta-G solvation = -4642.789200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.31421 -40.14105 -39.03485 -37.92722 -36.61214 -36.44128 -35.57132 -34.96533 -33.18870 -32.94752 -31.03139 -30.43015 -28.25493 -26.47201 -26.15017 -24.84744 -23.37815 -22.23219 -21.50991 -20.40475 -18.53919 -18.06465 -17.81665 -17.57426 -17.33694 -17.06395 -16.55560 -16.05233 -15.86871 -15.60122 -15.18971 -14.90772 -14.85255 -14.54050 -14.31488 -14.23224 -14.00456 -13.28797 -13.12855 -12.99046 -12.83248 -12.51250 -12.26318 -12.15658 -11.54833 -11.47489 -11.09005 -10.88009 -10.74456 -10.70250 -10.22107 -10.13470 -9.82175 -9.58999 -9.53991 -9.14009 -8.85807 -8.80350 -8.24359 -7.55717 -3.93024 -0.25314 0.88079 1.53606 1.98055 2.63354 2.69382 2.79723 2.86906 3.04766 3.17274 3.29039 3.32590 3.55494 3.71448 4.19940 4.27520 4.37580 4.49360 4.69350 4.86493 4.91163 5.00815 5.31048 5.46245 5.57776 5.78923 5.83564 5.90945 5.95468 6.08151 6.12789 6.33970 6.76490 6.96925 7.18612 7.22622 7.55349 7.90238 8.31113 8.52690 8.71456 9.38363 9.51213 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.004914 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.406359 B = 5696.949258 C = 6289.990919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.033 3.967 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.240 4.240 8 H 0.143 0.857 9 N -0.365 5.365 10 C 0.105 3.895 11 C 0.482 3.518 12 O -0.489 6.489 13 O -0.528 6.528 14 C 0.447 3.553 15 O -0.538 6.538 16 C -0.043 4.043 17 C -0.093 4.093 18 C 0.067 3.933 19 C 0.012 3.988 20 C -0.039 4.039 21 C 0.018 3.982 22 N -0.009 5.009 23 O -0.291 6.291 24 O -0.134 6.134 25 O -0.302 6.302 26 C 0.212 3.788 27 O -0.301 6.301 28 H 0.300 0.700 29 H 0.138 0.862 30 H 0.098 0.902 31 H 0.398 0.602 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -1.203 -12.650 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.373 4.373 8 H 0.160 0.840 9 N -0.077 5.077 10 C -0.020 4.020 11 C 0.321 3.679 12 O -0.374 6.374 13 O -0.340 6.340 14 C 0.243 3.757 15 O -0.422 6.422 16 C -0.052 4.052 17 C -0.113 4.113 18 C 0.021 3.979 19 C -0.034 4.034 20 C -0.059 4.059 21 C -0.076 4.076 22 N 0.436 4.564 23 O -0.444 6.444 24 O -0.324 6.324 25 O -0.218 6.218 26 C 0.100 3.900 27 O -0.216 6.216 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.116 0.884 31 H 0.255 0.745 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.720 -1.397 -12.912 13.509 hybrid contribution -0.554 0.251 0.740 0.957 sum -4.273 -1.146 -12.172 12.951 Atomic orbital electron populations 1.69009 1.08626 1.32064 1.30718 1.27451 0.95051 1.01827 0.94367 0.85525 0.80730 0.77155 0.79641 1.18766 1.19843 1.17382 1.21798 1.04452 0.83963 1.27111 0.84010 1.43432 1.11812 1.10213 1.42247 1.21506 0.81175 1.06196 0.93166 1.23530 0.82072 0.72649 0.89615 1.90742 1.81860 1.43459 1.21292 1.84487 1.18345 1.83984 1.47176 1.16869 0.88992 0.81034 0.88827 1.90689 1.23627 1.78235 1.49603 1.19451 0.98875 0.93853 0.92981 1.20013 1.01754 0.98732 0.90778 1.19714 0.99279 0.95097 0.83781 1.19125 1.04559 0.88558 0.91178 1.19283 0.97533 0.99587 0.89517 1.19275 1.12908 0.95433 0.79996 1.49689 1.01319 1.02564 1.02845 1.96139 1.64371 1.06253 1.77655 1.96367 1.49397 1.27188 1.59405 1.87316 1.76116 1.43849 1.14515 1.25674 1.02699 0.74623 0.86996 1.87403 1.85899 1.26281 1.22037 0.88706 0.84485 0.88421 0.74485 0.82689 0.82554 0.89590 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -15.65 9.53 56.00 0.53 -15.12 16 2 C 0.03 0.68 5.02 -15.16 -0.08 0.60 16 3 Si 0.95 15.59 29.72 -169.99 -5.05 10.53 16 4 H -0.26 -4.14 7.11 56.52 0.40 -3.74 16 5 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 6 H -0.25 -4.27 7.11 56.52 0.40 -3.87 16 7 C -0.24 -5.57 9.51 -13.46 -0.13 -5.70 16 8 H 0.14 3.51 7.32 -52.49 -0.38 3.13 16 9 N -0.36 -8.24 2.07 -115.76 -0.24 -8.48 16 10 C 0.10 2.04 5.17 -5.20 -0.03 2.01 16 11 C 0.48 10.07 6.69 36.01 0.24 10.31 16 12 O -0.49 -12.35 17.08 -18.75 -0.32 -12.67 16 13 O -0.53 -8.85 13.42 -39.24 -0.53 -9.37 16 14 C 0.45 10.71 5.37 -12.52 -0.07 10.64 16 15 O -0.54 -14.83 14.55 -18.37 -0.27 -15.10 16 16 C -0.04 -0.89 4.78 -104.97 -0.50 -1.39 16 17 C -0.09 -1.51 7.58 -39.04 -0.30 -1.81 16 18 C 0.07 1.01 7.13 -39.13 -0.28 0.73 16 19 C 0.01 0.19 7.16 -38.82 -0.28 -0.09 16 20 C -0.04 -0.70 9.58 -39.53 -0.38 -1.08 16 21 C 0.02 0.38 6.89 -79.55 -0.55 -0.17 16 22 N -0.01 -0.24 4.98 34.16 0.17 -0.07 16 23 O -0.29 -7.32 19.16 -31.57 -0.60 -7.92 16 24 O -0.13 -3.82 15.75 -39.73 -0.63 -4.44 16 25 O -0.30 -3.98 11.39 -45.13 -0.51 -4.49 16 26 C 0.21 1.99 8.88 101.05 0.90 2.88 16 27 O -0.30 -3.79 11.41 -45.80 -0.52 -4.31 16 28 H 0.30 5.42 8.26 -40.82 -0.34 5.09 16 29 H 0.14 2.51 5.96 -51.93 -0.31 2.20 16 30 H 0.10 1.65 4.73 -51.93 -0.25 1.40 16 31 H 0.40 5.11 9.10 45.56 0.41 5.52 16 32 H 0.16 2.15 7.83 -52.49 -0.41 1.74 16 33 H 0.16 2.60 7.58 -52.48 -0.40 2.20 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -33.66 321.23 -5.88 -39.54 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -1.31 Total: 10.14 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -1.44 Total: 16.93 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.46 Total: -23.67 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -3.38 Total: -58.32 kcal Atomic # 14 Polarization: 15.59 SS G_CDS: -5.05 Total: 10.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.66 -5.88 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.230 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds