Wall clock time and date at job start Tue Mar 31 2020 21:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29312 * 1 3 3 Si 1.86799 * 120.00192 * 2 1 4 4 H 1.48507 * 109.46587 * 274.99715 * 3 2 1 5 5 H 1.48495 * 109.47150 * 34.99190 * 3 2 1 6 6 H 1.48497 * 109.47550 * 154.99948 * 3 2 1 7 7 C 1.46794 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99916 * 214.01515 * 7 2 1 9 9 N 1.33304 * 119.99699 * 34.01656 * 7 2 1 10 10 C 1.46492 * 120.00386 * 355.42122 * 9 7 2 11 11 C 1.50701 * 109.47318 * 274.46614 * 10 9 7 12 12 O 1.20823 * 119.99916 * 359.97438 * 11 10 9 13 13 O 1.34224 * 119.99747 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99761 * 175.42622 * 9 7 2 15 15 O 1.21512 * 119.99895 * 5.32960 * 14 9 7 16 16 C 1.47425 * 120.00346 * 185.33516 * 14 9 7 17 17 C 1.39869 * 120.08928 * 58.91499 * 16 14 9 18 18 C 1.38038 * 119.90013 * 179.97438 * 17 16 14 19 19 C 1.39639 * 119.98851 * 0.02562 * 18 17 16 20 20 C 1.38871 * 120.06470 * 359.96782 * 19 18 17 21 21 C 1.37751 * 120.22861 * 0.27971 * 20 19 18 22 22 N 1.48019 * 120.00110 * 179.70202 * 21 20 19 23 23 O 1.31704 * 120.00114 * 7.23422 * 22 21 20 24 24 O 1.31698 * 119.99918 * 187.23176 * 22 21 20 25 25 O 1.36329 * 108.57848 * 179.97438 * 19 18 17 26 26 C 1.43959 * 105.54397 * 17.34222 * 25 19 18 27 27 O 1.36535 * 131.43497 * 179.97438 * 18 17 16 28 28 H 0.96999 * 120.00181 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47010 * 34.46619 * 10 9 7 30 30 H 1.09005 * 109.47178 * 154.46279 * 10 9 7 31 31 H 0.96711 * 116.99971 * 179.97438 * 13 11 10 32 32 H 1.08002 * 120.05066 * 359.96082 * 17 16 14 33 33 H 1.08007 * 119.88195 * 180.02562 * 20 19 18 34 34 H 1.09002 * 110.56634 * 91.33116 * 26 25 19 35 35 H 1.08999 * 110.56792 * 214.18318 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.3690 2.1073 -1.3949 5 1 1.4814 2.6199 0.8029 6 1 3.5736 1.4120 0.5917 7 6 2.0271 -1.2713 0.0006 8 1 2.9685 -1.3510 0.5238 9 7 1.5316 -2.3272 -0.6448 10 6 0.2088 -2.2495 -1.2695 11 6 -0.8495 -2.5740 -0.2469 12 8 -0.5314 -2.8431 0.8872 13 8 -2.1454 -2.5651 -0.5964 14 6 2.2476 -3.4664 -0.7225 15 8 3.3004 -3.5643 -0.1237 16 6 1.7537 -4.5937 -1.5341 17 6 1.5186 -4.4228 -2.9022 18 6 1.0566 -5.4811 -3.6585 19 6 0.8242 -6.7198 -3.0571 20 6 1.0581 -6.8884 -1.6987 21 6 1.5142 -5.8349 -0.9374 22 7 1.7555 -6.0184 0.5114 23 8 1.6722 -7.2192 1.0459 24 8 2.0536 -4.9810 1.2659 25 8 0.3762 -7.5873 -4.0085 26 6 0.7251 -6.9895 -5.2708 27 8 0.7524 -5.5782 -4.9860 28 1 -0.4850 0.8400 -0.0004 29 1 0.0468 -1.2421 -1.6530 30 1 0.1522 -2.9642 -2.0905 31 1 -2.7878 -2.7801 0.0938 32 1 1.6981 -3.4642 -3.3662 33 1 0.8777 -7.8479 -1.2366 34 1 1.7060 -7.3332 -5.5991 35 1 -0.0315 -7.2134 -6.0227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:57 Heat of formation + Delta-G solvation = -116.060201 kcal Electronic energy + Delta-G solvation = -30641.104085 eV Core-core repulsion = 25997.088179 eV Total energy + Delta-G solvation = -4644.015906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -42.96975 -42.58370 -40.89093 -38.96409 -38.07753 -37.13497 -37.01476 -36.57212 -36.02714 -33.08888 -32.04756 -30.98605 -30.64124 -28.57520 -26.83888 -25.96219 -24.44789 -23.66948 -23.04962 -22.28330 -20.54217 -19.55197 -19.36506 -18.83408 -18.72009 -18.22398 -17.91212 -17.74509 -17.31516 -17.06240 -16.79011 -16.43943 -16.02699 -15.96308 -15.34683 -14.97901 -14.88501 -14.72713 -14.54033 -14.52438 -14.42813 -14.10114 -13.91606 -13.70955 -13.40569 -13.10716 -12.64632 -12.57315 -12.25925 -12.16038 -11.73955 -11.63320 -11.51359 -11.27272 -10.51808 -10.25887 -10.24663 -10.05544 -9.82065 -8.93888 -5.93080 -1.92916 0.09734 0.39958 0.73950 0.86711 1.01389 1.17332 1.57485 1.68296 1.84525 1.88353 2.02810 2.07177 2.45989 2.56657 2.80058 2.90200 3.18363 3.49053 3.73246 3.87502 4.00593 4.05414 4.14295 4.23251 4.27125 4.36243 4.43774 4.68899 4.78917 4.97743 5.09212 5.24983 5.34898 5.46650 5.54523 5.76175 6.34781 6.43059 6.77936 6.86601 7.26776 8.23816 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.004914 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.406359 B = 5696.949258 C = 6289.990919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.046 4.046 3 Si 1.055 2.945 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.233 1.233 7 C 0.254 3.746 8 H 0.219 0.781 9 N -0.374 5.374 10 C 0.070 3.930 11 C 0.488 3.512 12 O -0.539 6.539 13 O -0.496 6.496 14 C 0.512 3.488 15 O -0.497 6.497 16 C -0.267 4.267 17 C -0.003 4.003 18 C -0.072 4.072 19 C 0.067 3.933 20 C -0.153 4.153 21 C 0.063 3.937 22 N -0.060 5.060 23 O -0.656 6.656 24 O -0.547 6.547 25 O -0.331 6.331 26 C 0.204 3.796 27 O -0.305 6.305 28 H 0.381 0.619 29 H 0.203 0.797 30 H 0.155 0.845 31 H 0.429 0.571 32 H 0.179 0.821 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 28.599 -15.931 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.229 5.229 2 C -0.280 4.280 3 Si 0.860 3.140 4 H -0.135 1.135 5 H -0.154 1.154 6 H -0.155 1.155 7 C 0.084 3.916 8 H 0.236 0.764 9 N -0.064 5.064 10 C -0.051 4.051 11 C 0.329 3.671 12 O -0.428 6.428 13 O -0.309 6.309 14 C 0.315 3.685 15 O -0.372 6.372 16 C -0.279 4.279 17 C -0.022 4.022 18 C -0.119 4.119 19 C 0.019 3.981 20 C -0.175 4.175 21 C -0.062 4.062 22 N 0.240 4.760 23 O -0.727 6.727 24 O -0.628 6.628 25 O -0.248 6.248 26 C 0.093 3.907 27 O -0.223 6.223 28 H 0.204 0.796 29 H 0.219 0.781 30 H 0.172 0.828 31 H 0.291 0.709 32 H 0.197 0.803 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.090 27.893 -15.377 32.255 hybrid contribution -0.503 -1.539 1.829 2.443 sum -5.593 26.354 -13.548 30.156 Atomic orbital electron populations 1.68826 1.09984 1.41293 1.02805 1.30482 0.97950 1.03328 0.96262 0.84177 0.79124 0.66859 0.83856 1.13479 1.15406 1.15477 1.27538 0.98452 0.83296 0.82333 0.76420 1.46553 1.15735 1.10316 1.33844 1.22341 0.76222 1.11687 0.94864 1.22888 0.84118 0.72295 0.87774 1.90926 1.82840 1.45195 1.23811 1.84339 1.16112 1.82449 1.48017 1.18365 0.85515 0.80528 0.84090 1.90694 1.23900 1.76748 1.45873 1.17400 1.24996 0.91538 0.93967 1.19563 0.95852 0.98413 0.88407 1.18747 1.13601 0.95437 0.84077 1.19146 0.99762 0.89616 0.89600 1.18627 1.09154 0.98446 0.91289 1.18982 1.11755 0.95893 0.79613 1.47703 1.27095 0.99275 1.01955 1.95645 1.86252 1.10419 1.80367 1.95606 1.74633 1.29487 1.63026 1.87193 1.76039 1.45345 1.16176 1.26004 1.04141 0.74866 0.85685 1.87185 1.87767 1.26180 1.21123 0.79632 0.78064 0.82754 0.70910 0.80349 0.89468 0.88843 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 76. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -6.25 9.53 23.26 0.22 -6.02 16 2 C -0.05 -0.43 5.02 87.30 0.44 0.01 16 3 Si 1.05 0.99 29.72 68.60 2.04 3.02 16 4 H -0.21 0.22 7.11 99.48 0.71 0.93 16 5 H -0.23 -0.18 7.11 99.48 0.71 0.53 16 6 H -0.23 -0.74 7.11 99.48 0.71 -0.03 16 7 C 0.25 5.21 9.51 86.71 0.82 6.04 16 8 H 0.22 4.17 7.32 -2.91 -0.02 4.15 16 9 N -0.37 -11.50 2.07 -638.46 -1.32 -12.82 16 10 C 0.07 1.66 5.17 85.64 0.44 2.11 16 11 C 0.49 15.25 6.69 71.24 0.48 15.73 16 12 O -0.54 -23.88 17.08 21.97 0.38 -23.50 16 13 O -0.50 -11.31 13.42 -51.36 -0.69 -12.00 16 14 C 0.51 23.88 5.37 86.66 0.47 24.34 16 15 O -0.50 -27.57 14.55 18.93 0.28 -27.29 16 16 C -0.27 -13.57 4.78 -20.09 -0.10 -13.66 16 17 C 0.00 -0.12 7.58 22.62 0.17 0.05 16 18 C -0.07 -2.89 7.13 22.56 0.16 -2.73 16 19 C 0.07 3.22 7.16 22.76 0.16 3.38 16 20 C -0.15 -9.35 9.58 22.31 0.21 -9.14 16 21 C 0.06 4.15 6.89 36.63 0.25 4.41 16 22 N -0.06 -4.89 4.98 -45.85 -0.23 -5.12 16 23 O -0.66 -59.40 19.16 3.51 0.07 -59.33 16 24 O -0.55 -45.09 15.75 11.32 0.18 -44.92 16 25 O -0.33 -13.40 11.39 -74.05 -0.84 -14.24 16 26 C 0.20 5.60 8.88 113.37 1.01 6.60 16 27 O -0.31 -9.75 11.41 -76.47 -0.87 -10.63 16 28 H 0.38 1.07 8.26 -92.71 -0.77 0.31 16 29 H 0.20 2.18 5.96 -2.39 -0.01 2.17 16 30 H 0.16 3.78 4.73 -2.38 -0.01 3.77 16 31 H 0.43 7.20 9.10 -74.05 -0.67 6.52 16 32 H 0.18 4.36 7.83 -2.91 -0.02 4.34 16 33 H 0.09 5.83 7.58 -2.91 -0.02 5.81 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.17 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -146.45 321.23 4.27 -142.18 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.55 Total: 33.53 kcal Atomic # 6 Polarization: 32.62 SS G_CDS: 4.52 Total: 37.14 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: -1.33 Total: -23.97 kcal Atomic # 8 Polarization: -190.40 SS G_CDS: -1.51 Total: -191.91 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: 2.04 Total: 3.02 kcal Total: -146.45 4.27 -142.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.119 kcal (2) G-P(sol) polarization free energy of solvation -146.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -142.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds