Wall clock time and date at job start Tue Mar 31 2020 20:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47293 * 300.00118 * 3 2 1 6 6 H 1.48504 * 109.47190 * 59.99864 * 3 2 1 7 7 C 1.38970 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 168.23190 * 7 2 1 9 9 N 1.36947 * 119.99702 * 348.22364 * 7 2 1 10 10 C 1.46501 * 120.00513 * 317.09283 * 9 7 2 11 11 C 1.50698 * 109.47336 * 264.28000 * 10 9 7 12 12 O 1.20822 * 119.99793 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.34782 * 119.99477 * 137.10124 * 9 7 2 15 15 O 1.21674 * 119.99373 * 184.94506 * 14 9 7 16 16 C 1.47171 * 120.00239 * 4.93949 * 14 9 7 17 17 C 1.36250 * 122.55679 * 177.66307 * 16 14 9 18 18 S 1.70990 * 109.07321 * 180.02562 * 17 16 14 19 19 C 1.75961 * 90.66920 * 0.02562 * 18 17 16 20 20 C 1.47147 * 125.23335 * 179.97438 * 19 18 17 21 21 C 1.35111 * 125.28000 * 359.74341 * 20 19 18 22 22 C 1.37765 * 114.67882 * 179.83485 * 21 20 19 23 23 C 1.33740 * 115.09412 * 0.45481 * 22 21 20 24 24 S 1.75856 * 109.78222 * 359.75557 * 23 22 21 25 25 N 1.30063 * 109.54109 * 0.26126 * 19 18 17 26 26 H 0.96995 * 119.99701 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46674 * 24.28174 * 10 9 7 28 28 H 1.08995 * 109.46958 * 144.27537 * 10 9 7 29 29 H 0.96695 * 117.00473 * 180.02562 * 13 11 10 30 30 H 1.08001 * 125.46285 * 0.02562 * 17 16 14 31 31 H 1.08005 * 122.66142 * 359.97438 * 21 20 19 32 32 H 1.07997 * 122.44947 * 180.21684 * 22 21 20 33 33 H 1.08000 * 125.11012 * 179.78908 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2035 -0.0005 8 1 3.0720 -1.2133 -0.1913 9 7 1.3458 -2.3771 0.2410 10 6 0.3474 -2.4476 1.3108 11 6 0.9893 -2.9891 2.5621 12 8 2.1605 -3.2861 2.5603 13 8 0.2600 -3.1414 3.6786 14 6 1.6118 -3.4673 -0.5055 15 8 0.9604 -4.4835 -0.3518 16 6 2.6899 -3.4286 -1.5066 17 6 3.0337 -4.5132 -2.2562 18 16 4.3193 -4.0865 -3.2996 19 6 4.3230 -2.4478 -2.6586 20 6 5.2288 -1.3705 -3.0876 21 6 6.1892 -1.4877 -4.0306 22 6 6.9102 -0.3370 -4.2635 23 6 6.5571 0.7145 -3.5164 24 16 5.2345 0.2676 -2.4470 25 7 3.4059 -2.3368 -1.7430 26 1 -0.4849 0.8400 -0.0004 27 1 -0.0461 -1.4502 1.5067 28 1 -0.4661 -3.1057 1.0057 29 1 0.7156 -3.4919 4.4562 30 1 2.5687 -5.4864 -2.2003 31 1 6.3754 -2.4096 -4.5615 32 1 7.7050 -0.2889 -4.9931 33 1 7.0151 1.6915 -3.5631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:13 Heat of formation + Delta-G solvation = -22.077617 kcal Electronic energy + Delta-G solvation = -24294.175867 eV Core-core repulsion = 20539.741094 eV Total energy + Delta-G solvation = -3754.434774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.92596 -39.24711 -37.88915 -37.26946 -35.44963 -34.80780 -31.60194 -31.42542 -28.59191 -28.27504 -25.35709 -24.85284 -23.63649 -21.65765 -20.50535 -19.79641 -18.97254 -17.86535 -17.41761 -17.08925 -17.01621 -15.80967 -15.44574 -15.22155 -14.79158 -14.62056 -14.56019 -14.36420 -13.86615 -13.32480 -12.99451 -12.93350 -12.66253 -12.63025 -12.12573 -12.05754 -11.71560 -11.48063 -11.37435 -11.07070 -11.00456 -10.73605 -10.57915 -10.16434 -9.85745 -9.66176 -9.42642 -9.11057 -8.97091 -8.68827 -8.40599 -7.88409 -7.55981 -6.42459 -4.12114 0.35497 1.20231 1.41228 1.88774 2.02888 2.29144 2.53038 3.02459 3.05493 3.16115 3.21980 3.27686 3.65212 4.09193 4.18863 4.39550 4.68661 5.05263 5.07248 5.38121 5.42206 5.52944 5.67745 5.87076 5.98159 6.11808 6.20587 6.29253 6.40262 6.54361 6.74372 7.14284 7.58975 7.67936 8.01660 8.46058 8.65703 9.01177 9.26462 9.69586 10.63257 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.005430 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.715496 B = 5155.375139 C = 6840.173677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 0.905 3.095 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.404 5.404 10 C 0.124 3.876 11 C 0.461 3.539 12 O -0.515 6.515 13 O -0.525 6.525 14 C 0.546 3.454 15 O -0.594 6.594 16 C 0.063 3.937 17 C -0.231 4.231 18 S 0.142 5.858 19 C 0.091 3.909 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.234 4.234 24 S 0.204 5.796 25 N -0.376 5.376 26 H 0.271 0.729 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.395 0.605 30 H 0.186 0.814 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.705 -0.021 -5.835 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.166 4.166 3 Si 0.731 3.269 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.120 5.120 10 C -0.001 4.001 11 C 0.302 3.698 12 O -0.402 6.402 13 O -0.336 6.336 14 C 0.333 3.667 15 O -0.479 6.479 16 C -0.074 4.074 17 C -0.373 4.373 18 S 0.398 5.602 19 C -0.185 4.185 20 C -0.234 4.234 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.372 4.372 24 S 0.469 5.531 25 N -0.090 5.090 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.120 0.880 29 H 0.252 0.748 30 H 0.203 0.797 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.963 0.445 -5.437 10.493 hybrid contribution 0.717 -0.140 0.140 0.744 sum 9.681 0.305 -5.297 11.039 Atomic orbital electron populations 1.69790 1.06098 1.27916 1.47716 1.25514 0.95306 1.00023 0.95764 0.86141 0.81062 0.81564 0.78112 1.17604 1.20214 1.20568 1.20303 0.94750 0.81871 1.46721 0.85968 1.42903 1.35068 1.09694 1.24326 1.21014 0.91862 1.05453 0.81817 1.25013 0.85771 0.73890 0.85094 1.90634 1.18106 1.46988 1.84510 1.84600 1.47522 1.79016 1.22481 1.17297 0.83625 0.84648 0.81080 1.90659 1.52474 1.33351 1.71457 1.20474 0.99158 0.87382 1.00352 1.26682 1.03323 1.05186 1.02128 1.83303 1.30392 1.08401 1.38079 1.25136 0.99674 0.94711 0.99004 1.21934 1.00985 0.96659 1.03849 1.20241 0.96419 1.00274 0.99177 1.19873 1.02380 0.91980 1.02272 1.26082 1.04029 1.03664 1.03381 1.85218 1.29702 1.01839 1.36314 1.67915 1.03148 1.26421 1.11517 0.91890 0.83393 0.88025 0.74788 0.79713 0.84201 0.84212 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.77 11.35 55.50 0.63 -22.14 16 2 C 0.04 0.96 5.09 -17.46 -0.09 0.87 16 3 Si 0.91 19.67 29.57 -169.99 -5.03 14.64 16 4 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.31 -8.04 7.88 -15.00 -0.12 -8.16 16 8 H 0.12 3.23 5.62 -52.49 -0.30 2.94 16 9 N -0.40 -10.53 2.04 -117.40 -0.24 -10.77 16 10 C 0.12 2.96 5.48 -5.19 -0.03 2.94 16 11 C 0.46 10.30 8.36 36.00 0.30 10.60 16 12 O -0.52 -12.95 17.05 -18.75 -0.32 -13.27 16 13 O -0.53 -9.24 13.42 -39.24 -0.53 -9.77 16 14 C 0.55 14.16 7.40 -12.63 -0.09 14.07 16 15 O -0.59 -15.95 16.32 5.21 0.09 -15.86 16 16 C 0.06 1.43 6.53 -84.58 -0.55 0.88 16 17 C -0.23 -4.29 10.62 30.02 0.32 -3.97 16 18 S 0.14 2.11 22.73 -107.50 -2.44 -0.33 16 19 C 0.09 1.65 7.43 -14.69 -0.11 1.54 16 20 C -0.11 -1.80 6.42 -37.08 -0.24 -2.04 16 21 C -0.13 -1.59 9.87 -40.87 -0.40 -1.99 16 22 C -0.13 -1.48 10.16 -41.33 -0.42 -1.90 16 23 C -0.23 -2.73 11.23 29.15 0.33 -2.40 16 24 S 0.20 3.24 23.29 -107.50 -2.50 0.74 16 25 N -0.38 -8.28 6.87 -8.07 -0.06 -8.34 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.15 3.61 5.66 -51.93 -0.29 3.32 16 28 H 0.10 2.38 7.53 -51.93 -0.39 1.99 16 29 H 0.40 4.95 9.10 45.56 0.41 5.36 16 30 H 0.19 3.15 8.01 -52.49 -0.42 2.73 16 31 H 0.14 1.45 7.89 -52.48 -0.41 1.04 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -32.37 328.67 -7.93 -40.30 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -1.38 Total: 9.40 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -1.10 Total: 10.44 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.34 Total: -41.24 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.76 Total: -38.90 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -4.95 Total: 0.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.37 -7.93 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.226 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds