Wall clock time and date at job start Tue Mar 31 2020 20:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47293 * 300.00118 * 3 2 1 6 6 H 1.48504 * 109.47190 * 59.99864 * 3 2 1 7 7 C 1.38970 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 168.23190 * 7 2 1 9 9 N 1.36947 * 119.99702 * 348.22364 * 7 2 1 10 10 C 1.46501 * 120.00513 * 317.09283 * 9 7 2 11 11 C 1.50698 * 109.47336 * 264.28000 * 10 9 7 12 12 O 1.20822 * 119.99793 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.34782 * 119.99477 * 137.10124 * 9 7 2 15 15 O 1.21674 * 119.99373 * 184.94506 * 14 9 7 16 16 C 1.47171 * 120.00239 * 4.93949 * 14 9 7 17 17 C 1.36250 * 122.55679 * 177.66307 * 16 14 9 18 18 S 1.70990 * 109.07321 * 180.02562 * 17 16 14 19 19 C 1.75961 * 90.66920 * 0.02562 * 18 17 16 20 20 C 1.47147 * 125.23335 * 179.97438 * 19 18 17 21 21 C 1.35111 * 125.28000 * 359.74341 * 20 19 18 22 22 C 1.37765 * 114.67882 * 179.83485 * 21 20 19 23 23 C 1.33740 * 115.09412 * 0.45481 * 22 21 20 24 24 S 1.75856 * 109.78222 * 359.75557 * 23 22 21 25 25 N 1.30063 * 109.54109 * 0.26126 * 19 18 17 26 26 H 0.96995 * 119.99701 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46674 * 24.28174 * 10 9 7 28 28 H 1.08995 * 109.46958 * 144.27537 * 10 9 7 29 29 H 0.96695 * 117.00473 * 180.02562 * 13 11 10 30 30 H 1.08001 * 125.46285 * 0.02562 * 17 16 14 31 31 H 1.08005 * 122.66142 * 359.97438 * 21 20 19 32 32 H 1.07997 * 122.44947 * 180.21684 * 22 21 20 33 33 H 1.08000 * 125.11012 * 179.78908 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2035 -0.0005 8 1 3.0720 -1.2133 -0.1913 9 7 1.3458 -2.3771 0.2410 10 6 0.3474 -2.4476 1.3108 11 6 0.9893 -2.9891 2.5621 12 8 2.1605 -3.2861 2.5603 13 8 0.2600 -3.1414 3.6786 14 6 1.6118 -3.4673 -0.5055 15 8 0.9604 -4.4835 -0.3518 16 6 2.6899 -3.4286 -1.5066 17 6 3.0337 -4.5132 -2.2562 18 16 4.3193 -4.0865 -3.2996 19 6 4.3230 -2.4478 -2.6586 20 6 5.2288 -1.3705 -3.0876 21 6 6.1892 -1.4877 -4.0306 22 6 6.9102 -0.3370 -4.2635 23 6 6.5571 0.7145 -3.5164 24 16 5.2345 0.2676 -2.4470 25 7 3.4059 -2.3368 -1.7430 26 1 -0.4849 0.8400 -0.0004 27 1 -0.0461 -1.4502 1.5067 28 1 -0.4661 -3.1057 1.0057 29 1 0.7156 -3.4919 4.4562 30 1 2.5687 -5.4864 -2.2003 31 1 6.3754 -2.4096 -4.5615 32 1 7.7050 -0.2889 -4.9931 33 1 7.0151 1.6915 -3.5631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739085776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:13 Heat of formation + Delta-G solvation = -43.700223 kcal Electronic energy + Delta-G solvation = -24295.113494 eV Core-core repulsion = 20539.741094 eV Total energy + Delta-G solvation = -3755.372400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66239 -40.88244 -39.40140 -38.48040 -37.19449 -36.69318 -33.54105 -32.69664 -30.16272 -29.79338 -27.03291 -26.37802 -24.98586 -23.14631 -22.14814 -21.04214 -20.65263 -19.18265 -19.14463 -18.72317 -18.35547 -17.51558 -17.03950 -16.66073 -16.55692 -16.25775 -16.16227 -16.02322 -15.29153 -14.91610 -14.63945 -14.14640 -14.05332 -13.67044 -13.59087 -13.44066 -13.31267 -13.13349 -12.98855 -12.78268 -12.68650 -12.48835 -12.14019 -11.70753 -11.43251 -11.28189 -10.95097 -10.90155 -10.37068 -10.23327 -9.53356 -9.50819 -9.04750 -8.33955 -6.09206 -0.86260 -0.01218 0.13867 0.52567 0.91199 1.16015 1.20560 1.24176 1.41961 1.44095 1.57411 1.87662 2.02988 2.33500 2.58616 2.75144 3.07205 3.20071 3.95725 4.18617 4.23160 4.29084 4.36514 4.49376 4.54290 4.62951 4.80224 4.87841 5.12028 5.31062 5.53454 5.56965 5.65986 5.79057 6.49957 6.62090 7.02431 7.08516 7.35334 7.77315 8.72337 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.005430 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.715496 B = 5155.375139 C = 6840.173677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.242 1.242 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.315 4.315 8 H 0.117 0.883 9 N -0.417 5.417 10 C 0.120 3.880 11 C 0.471 3.529 12 O -0.547 6.547 13 O -0.506 6.506 14 C 0.530 3.470 15 O -0.621 6.621 16 C 0.019 3.981 17 C -0.242 4.242 18 S 0.266 5.734 19 C 0.075 3.925 20 C -0.149 4.149 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.201 4.201 24 S 0.108 5.892 25 N -0.421 5.421 26 H 0.273 0.727 27 H 0.142 0.858 28 H 0.098 0.902 29 H 0.422 0.578 30 H 0.194 0.806 31 H 0.169 0.831 32 H 0.184 0.816 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 0.217 -7.960 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.200 4.200 3 Si 0.778 3.222 4 H -0.165 1.165 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.444 4.444 8 H 0.134 0.866 9 N -0.133 5.133 10 C -0.005 4.005 11 C 0.314 3.686 12 O -0.437 6.437 13 O -0.319 6.319 14 C 0.319 3.681 15 O -0.509 6.509 16 C -0.117 4.117 17 C -0.385 4.385 18 S 0.524 5.476 19 C -0.200 4.200 20 C -0.270 4.270 21 C -0.132 4.132 22 C -0.162 4.162 23 C -0.339 4.339 24 S 0.372 5.628 25 N -0.136 5.136 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.116 0.884 29 H 0.283 0.717 30 H 0.211 0.789 31 H 0.186 0.814 32 H 0.201 0.799 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.980 0.670 -7.539 14.170 hybrid contribution -0.082 -0.298 0.661 0.729 sum 11.898 0.372 -6.878 13.748 Atomic orbital electron populations 1.69872 1.07110 1.28628 1.48693 1.26191 0.95994 1.02437 0.95329 0.85388 0.80729 0.78007 0.78077 1.16488 1.19923 1.20115 1.20392 0.94726 0.82229 1.47038 0.86567 1.43109 1.35277 1.09960 1.24970 1.20941 0.91830 1.05065 0.82692 1.24524 0.85122 0.73205 0.85742 1.90619 1.19343 1.48494 1.85230 1.84507 1.46650 1.78430 1.22348 1.17921 0.84342 0.84235 0.81602 1.90591 1.53765 1.33954 1.72583 1.20215 1.00242 0.89428 1.01854 1.27005 1.04554 1.04695 1.02205 1.82664 1.26464 1.04162 1.34294 1.25554 0.98869 0.97264 0.98310 1.21950 1.02972 0.95762 1.06308 1.20721 0.93993 1.01874 0.96641 1.20336 1.02711 0.90683 1.02455 1.26421 1.01235 1.05278 1.00937 1.85481 1.33561 1.04024 1.39740 1.67774 1.04833 1.27014 1.13953 0.91696 0.84121 0.88394 0.71658 0.78860 0.81397 0.79865 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.76 11.35 21.67 0.25 -48.52 16 2 C 0.00 0.08 5.09 84.93 0.43 0.51 16 3 Si 0.95 41.46 29.57 68.60 2.03 43.49 16 4 H -0.24 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.32 -17.27 7.88 84.07 0.66 -16.61 16 8 H 0.12 6.49 5.62 -2.91 -0.02 6.47 16 9 N -0.42 -22.90 2.04 -643.58 -1.31 -24.22 16 10 C 0.12 6.03 5.48 85.63 0.47 6.50 16 11 C 0.47 21.63 8.36 71.24 0.60 22.23 16 12 O -0.55 -28.30 17.05 21.98 0.37 -27.93 16 13 O -0.51 -17.57 13.42 -51.34 -0.69 -18.26 16 14 C 0.53 28.95 7.40 86.59 0.64 29.59 16 15 O -0.62 -35.04 16.32 -4.26 -0.07 -35.11 16 16 C 0.02 0.91 6.53 40.90 0.27 1.17 16 17 C -0.24 -8.96 10.62 67.36 0.72 -8.24 16 18 S 0.27 7.22 22.73 -56.49 -1.28 5.94 16 19 C 0.08 2.70 7.43 87.30 0.65 3.34 16 20 C -0.15 -4.53 6.42 23.89 0.15 -4.37 16 21 C -0.10 -2.02 9.87 21.44 0.21 -1.81 16 22 C -0.13 -2.22 10.16 21.14 0.21 -2.01 16 23 C -0.20 -3.96 11.23 66.80 0.75 -3.21 16 24 S 0.11 3.36 23.29 -56.49 -1.32 2.05 16 25 N -0.42 -19.12 6.87 -179.46 -1.23 -20.35 16 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.14 7.23 5.66 -2.39 -0.01 7.21 16 28 H 0.10 4.87 7.53 -2.39 -0.02 4.85 16 29 H 0.42 9.95 9.10 -74.06 -0.67 9.28 16 30 H 0.19 6.59 8.01 -2.91 -0.02 6.57 16 31 H 0.17 2.52 7.89 -2.91 -0.02 2.49 16 32 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -75.93 328.67 3.04 -72.89 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.54 Total: 22.93 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 5.76 Total: 27.10 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -2.30 Total: -93.08 kcal Atomic # 8 Polarization: -80.91 SS G_CDS: -0.38 Total: -81.30 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 10.58 SS G_CDS: -2.60 Total: 7.98 kcal Total: -75.93 3.04 -72.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.185 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds