Wall clock time and date at job start Tue Mar 31 2020 21:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48490 * 109.47492 * 274.98171 * 3 2 1 5 5 H 1.48503 * 109.46848 * 34.98438 * 3 2 1 6 6 H 1.48499 * 109.46967 * 154.97616 * 3 2 1 7 7 C 1.38983 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 185.94150 * 7 2 1 9 9 N 1.37309 * 120.00040 * 5.93529 * 7 2 1 10 10 C 1.36604 * 126.07588 * 174.13655 * 9 7 2 11 11 C 1.35641 * 107.50134 * 180.02562 * 10 9 7 12 12 N 1.40570 * 126.07487 * 179.97438 * 11 10 9 13 13 S 1.65601 * 120.00121 * 134.99911 * 12 11 10 14 14 O 1.42094 * 106.40221 * 311.46031 * 13 12 11 15 15 O 1.42102 * 106.40210 * 178.54149 * 13 12 11 16 16 C 1.76203 * 107.21552 * 65.00282 * 13 12 11 17 17 C 1.38236 * 119.99986 * 89.99794 * 16 13 12 18 18 C 1.38230 * 119.99751 * 179.97438 * 17 16 13 19 19 C 1.38243 * 120.00284 * 359.97438 * 18 17 16 20 20 N 1.48011 * 120.00295 * 179.97438 * 19 18 17 21 21 O 1.21808 * 119.99929 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00365 * 180.02562 * 20 19 18 23 23 C 1.38237 * 119.99633 * 0.25374 * 19 18 17 24 24 C 1.38235 * 120.00075 * 359.47342 * 23 19 18 25 25 C 1.40653 * 107.84773 * 0.23053 * 11 10 9 26 26 N 1.30928 * 108.40708 * 359.61089 * 25 11 10 27 27 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 28 28 H 1.07997 * 126.24710 * 0.08228 * 10 9 7 29 29 H 0.97001 * 119.99529 * 315.00200 * 12 11 10 30 30 H 1.07995 * 119.99994 * 359.97438 * 17 16 13 31 31 H 1.07999 * 120.00425 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.99540 * 179.72035 * 23 19 18 33 33 H 1.07995 * 120.00115 * 180.27848 * 24 23 19 34 34 H 1.08011 * 125.79225 * 179.77302 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3893 2.1072 -1.3947 5 1 1.5011 2.6199 0.8028 6 1 3.5932 1.4120 0.5922 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2062 0.0963 9 7 1.3269 -2.3895 -0.1240 10 6 1.8866 -3.6290 -0.2520 11 6 0.8737 -4.5262 -0.3465 12 7 1.0112 -5.9177 -0.4913 13 16 0.0821 -6.9410 0.4208 14 8 0.1808 -6.4839 1.7626 15 8 0.4280 -8.2602 0.0217 16 6 -1.5937 -6.6971 -0.0659 17 6 -2.1327 -7.4523 -1.0908 18 6 -3.4475 -7.2613 -1.4722 19 6 -4.2237 -6.3156 -0.8286 20 7 -5.6314 -6.1108 -1.2374 21 8 -6.1058 -6.7752 -2.1414 22 8 -6.3151 -5.2772 -0.6706 23 6 -3.6833 -5.5572 0.1931 24 6 -2.3701 -5.7521 0.5784 25 6 -0.3387 -3.8163 -0.2797 26 7 -0.0653 -2.5433 -0.1418 27 1 -0.4850 0.8400 0.0004 28 1 2.9427 -3.8537 -0.2731 29 1 1.6505 -6.2784 -1.1254 30 1 -1.5264 -8.1913 -1.5933 31 1 -3.8685 -7.8509 -2.2732 32 1 -4.2883 -4.8153 0.6929 33 1 -1.9493 -5.1628 1.3796 34 1 -1.3273 -4.2483 -0.3306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747406902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:39 Heat of formation + Delta-G solvation = 44.809321 kcal Electronic energy + Delta-G solvation = -26399.057514 eV Core-core repulsion = 22237.063056 eV Total energy + Delta-G solvation = -4161.994458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39749 -39.90144 -39.56373 -37.23266 -36.77065 -35.85740 -34.79752 -33.23432 -32.56761 -31.83164 -30.46471 -27.64519 -27.04182 -25.05979 -23.59788 -22.98927 -21.06060 -20.30837 -19.67260 -19.47852 -18.86999 -18.33242 -17.74290 -17.61807 -17.14361 -16.15566 -15.77527 -15.50154 -15.30837 -14.73214 -14.36916 -14.19621 -13.97514 -13.76189 -13.54611 -13.13216 -12.38086 -12.19599 -12.12834 -11.92798 -11.88143 -11.83194 -11.75420 -11.53869 -11.34742 -11.31822 -11.20422 -11.07807 -10.64438 -10.50040 -10.16218 -9.65169 -9.55928 -9.06395 -8.40409 -7.24641 -6.76824 -4.48743 -0.66966 0.34291 0.61225 0.92105 1.12392 2.68081 2.82567 2.95346 3.01212 3.06437 3.34291 3.65263 3.70443 3.85124 3.93550 4.14787 4.23800 4.45739 4.61066 4.81687 4.83254 4.91226 5.13489 5.32707 5.33404 5.52168 5.72585 5.90941 6.05378 6.13927 6.18107 6.55757 6.92170 7.01676 7.29381 7.41749 7.61206 7.90280 8.43312 9.10025 9.31715 10.19481 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003851 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.261326 B = 7268.937095 C = 9183.819832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.048 3.952 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.322 4.322 8 H 0.121 0.879 9 N -0.136 5.136 10 C -0.054 4.054 11 C -0.056 4.056 12 N -1.012 6.012 13 S 2.697 3.303 14 O -0.937 6.937 15 O -0.962 6.962 16 C -0.631 4.631 17 C -0.017 4.017 18 C -0.081 4.081 19 C 0.004 3.996 20 N 0.022 4.978 21 O -0.154 6.154 22 O -0.147 6.147 23 C -0.075 4.075 24 C -0.009 4.009 25 C -0.075 4.075 26 N -0.244 5.244 27 H 0.278 0.722 28 H 0.153 0.847 29 H 0.414 0.586 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 -10.546 -2.032 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.170 4.170 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.455 4.455 8 H 0.139 0.861 9 N 0.097 4.903 10 C -0.206 4.206 11 C -0.164 4.164 12 N -0.767 5.767 13 S 2.783 3.217 14 O -0.926 6.926 15 O -0.952 6.952 16 C -0.714 4.714 17 C -0.037 4.037 18 C -0.101 4.101 19 C -0.078 4.078 20 N 0.544 4.456 21 O -0.371 6.371 22 O -0.365 6.365 23 C -0.095 4.095 24 C -0.028 4.028 25 C -0.251 4.251 26 N -0.075 5.075 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.250 0.750 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.189 0.811 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.096 -9.854 -0.948 10.119 hybrid contribution -0.059 0.129 -1.014 1.024 sum -2.155 -9.725 -1.963 10.152 Atomic orbital electron populations 1.70181 1.06252 1.28447 1.34542 1.25671 0.95739 1.00473 0.95106 0.85763 0.79550 0.79654 0.78983 1.19532 1.19954 1.18601 1.20006 0.92398 0.80461 1.52606 0.86122 1.44619 1.03675 1.04168 1.37858 1.21658 0.97667 0.85473 1.15825 1.16669 0.93576 0.81094 1.25041 1.52040 1.53489 1.13992 1.57211 1.02106 0.73136 0.72409 0.74047 1.93622 1.84920 1.81277 1.32812 1.93586 1.82489 1.35488 1.83617 1.31811 1.27573 1.05293 1.06741 1.20971 0.93966 0.95995 0.92768 1.21143 0.93722 0.95916 0.99331 1.21439 0.82278 1.02770 1.01351 1.43672 1.03054 0.99315 0.99589 1.94539 1.75222 1.45515 1.21821 1.94574 1.58855 1.28150 1.54953 1.21258 0.96146 0.97852 0.94213 1.21192 0.91675 0.92850 0.97096 1.23793 0.96432 0.92876 1.12037 1.78228 0.90970 1.13785 1.24532 0.91178 0.83004 0.74993 0.81893 0.82125 0.81730 0.81071 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.79 11.84 55.49 0.66 -19.13 16 2 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 3 Si 0.94 17.66 29.56 -169.99 -5.02 12.64 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.32 -7.85 10.24 -14.82 -0.15 -8.00 16 8 H 0.12 2.63 7.84 -52.49 -0.41 2.22 16 9 N -0.14 -3.38 3.74 -11.40 -0.04 -3.43 16 10 C -0.05 -1.16 11.50 -16.35 -0.19 -1.34 16 11 C -0.06 -1.10 6.41 -83.86 -0.54 -1.64 16 12 N -1.01 -15.12 5.93 32.32 0.19 -14.93 16 13 S 2.70 38.76 5.62 -107.50 -0.60 38.16 16 14 O -0.94 -16.65 17.00 -57.17 -0.97 -17.63 16 15 O -0.96 -14.09 17.28 -57.17 -0.99 -15.08 16 16 C -0.63 -8.07 5.22 -39.58 -0.21 -8.28 16 17 C -0.02 -0.19 9.52 -39.58 -0.38 -0.56 16 18 C -0.08 -0.87 9.56 -39.58 -0.38 -1.24 16 19 C 0.00 0.05 6.85 -79.95 -0.55 -0.50 16 20 N 0.02 0.31 4.45 33.96 0.15 0.46 16 21 O -0.15 -2.16 18.45 -29.46 -0.54 -2.71 16 22 O -0.15 -2.17 18.45 -29.46 -0.54 -2.71 16 23 C -0.07 -0.93 9.56 -39.58 -0.38 -1.31 16 24 C -0.01 -0.11 6.35 -39.58 -0.25 -0.37 16 25 C -0.08 -1.61 10.71 -17.03 -0.18 -1.79 16 26 N -0.24 -6.25 10.42 30.81 0.32 -5.93 16 27 H 0.28 6.55 8.31 -40.82 -0.34 6.22 16 28 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 29 H 0.41 4.93 8.96 -34.48 -0.31 4.62 16 30 H 0.16 1.31 7.62 -52.49 -0.40 0.91 16 31 H 0.16 1.33 7.61 -52.49 -0.40 0.93 16 32 H 0.17 1.81 7.61 -52.49 -0.40 1.41 16 33 H 0.17 2.30 7.18 -52.49 -0.38 1.92 16 34 H 0.15 2.76 4.21 -52.48 -0.22 2.54 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -32.18 322.87 -7.90 -40.08 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.07 Total: 9.32 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.30 Total: -23.98 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 1.28 Total: -42.96 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -3.05 Total: -38.12 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.64 kcal Atomic # 16 Polarization: 38.76 SS G_CDS: -0.60 Total: 38.16 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.18 -7.90 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.889 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds