Wall clock time and date at job start Tue Mar 31 2020 21:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48490 * 109.47492 * 274.98171 * 3 2 1 5 5 H 1.48503 * 109.46848 * 34.98438 * 3 2 1 6 6 H 1.48499 * 109.46967 * 154.97616 * 3 2 1 7 7 C 1.38983 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 185.94150 * 7 2 1 9 9 N 1.37309 * 120.00040 * 5.93529 * 7 2 1 10 10 C 1.36604 * 126.07588 * 174.13655 * 9 7 2 11 11 C 1.35641 * 107.50134 * 180.02562 * 10 9 7 12 12 N 1.40570 * 126.07487 * 179.97438 * 11 10 9 13 13 S 1.65601 * 120.00121 * 134.99911 * 12 11 10 14 14 O 1.42094 * 106.40221 * 311.46031 * 13 12 11 15 15 O 1.42102 * 106.40210 * 178.54149 * 13 12 11 16 16 C 1.76203 * 107.21552 * 65.00282 * 13 12 11 17 17 C 1.38236 * 119.99986 * 89.99794 * 16 13 12 18 18 C 1.38230 * 119.99751 * 179.97438 * 17 16 13 19 19 C 1.38243 * 120.00284 * 359.97438 * 18 17 16 20 20 N 1.48011 * 120.00295 * 179.97438 * 19 18 17 21 21 O 1.21808 * 119.99929 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00365 * 180.02562 * 20 19 18 23 23 C 1.38237 * 119.99633 * 0.25374 * 19 18 17 24 24 C 1.38235 * 120.00075 * 359.47342 * 23 19 18 25 25 C 1.40653 * 107.84773 * 0.23053 * 11 10 9 26 26 N 1.30928 * 108.40708 * 359.61089 * 25 11 10 27 27 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 28 28 H 1.07997 * 126.24710 * 0.08228 * 10 9 7 29 29 H 0.97001 * 119.99529 * 315.00200 * 12 11 10 30 30 H 1.07995 * 119.99994 * 359.97438 * 17 16 13 31 31 H 1.07999 * 120.00425 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.99540 * 179.72035 * 23 19 18 33 33 H 1.07995 * 120.00115 * 180.27848 * 24 23 19 34 34 H 1.08011 * 125.79225 * 179.77302 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3893 2.1072 -1.3947 5 1 1.5011 2.6199 0.8028 6 1 3.5932 1.4120 0.5922 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2062 0.0963 9 7 1.3269 -2.3895 -0.1240 10 6 1.8866 -3.6290 -0.2520 11 6 0.8737 -4.5262 -0.3465 12 7 1.0112 -5.9177 -0.4913 13 16 0.0821 -6.9410 0.4208 14 8 0.1808 -6.4839 1.7626 15 8 0.4280 -8.2602 0.0217 16 6 -1.5937 -6.6971 -0.0659 17 6 -2.1327 -7.4523 -1.0908 18 6 -3.4475 -7.2613 -1.4722 19 6 -4.2237 -6.3156 -0.8286 20 7 -5.6314 -6.1108 -1.2374 21 8 -6.1058 -6.7752 -2.1414 22 8 -6.3151 -5.2772 -0.6706 23 6 -3.6833 -5.5572 0.1931 24 6 -2.3701 -5.7521 0.5784 25 6 -0.3387 -3.8163 -0.2797 26 7 -0.0653 -2.5433 -0.1418 27 1 -0.4850 0.8400 0.0004 28 1 2.9427 -3.8537 -0.2731 29 1 1.6505 -6.2784 -1.1254 30 1 -1.5264 -8.1913 -1.5933 31 1 -3.8685 -7.8509 -2.2732 32 1 -4.2883 -4.8153 0.6929 33 1 -1.9493 -5.1628 1.3796 34 1 -1.3273 -4.2483 -0.3306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747406902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:38 Heat of formation + Delta-G solvation = 22.574670 kcal Electronic energy + Delta-G solvation = -26400.021681 eV Core-core repulsion = 22237.063056 eV Total energy + Delta-G solvation = -4162.958625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.46127 -41.52623 -40.61454 -38.47926 -37.86093 -37.12395 -36.30703 -34.86756 -33.58821 -32.80327 -32.17773 -29.29817 -28.10497 -26.77002 -24.57371 -24.03020 -22.72322 -21.83819 -20.86194 -20.61580 -19.94213 -19.72460 -18.97191 -18.80794 -18.43086 -17.56550 -17.28234 -16.78638 -16.26942 -16.00395 -15.73488 -15.37162 -15.19341 -15.04637 -14.98933 -14.49145 -13.80361 -13.55785 -13.44867 -13.35615 -13.26661 -12.93791 -12.86204 -12.81155 -12.75879 -12.66252 -12.43366 -12.35230 -12.07589 -11.84935 -11.29613 -11.21814 -10.77208 -10.57030 -10.18433 -8.88820 -8.50578 -6.30123 -1.71062 -0.84292 -0.31793 -0.14493 0.09678 1.27330 1.41438 1.57578 1.62338 1.73588 1.91084 2.11170 2.19034 2.56396 2.79599 2.96125 3.06110 3.19888 3.25393 3.66058 3.78210 4.03620 4.14175 4.21151 4.37864 4.45530 4.50696 4.56917 4.62499 4.89165 4.91048 5.18010 5.20744 5.38386 5.88173 6.04959 6.28806 6.30416 6.71951 7.38711 7.57660 8.48647 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003851 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.261326 B = 7268.937095 C = 9183.819832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.001 3.999 3 Si 1.013 2.987 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.354 4.354 8 H 0.139 0.861 9 N -0.166 5.166 10 C -0.060 4.060 11 C -0.039 4.039 12 N -1.005 6.005 13 S 2.719 3.281 14 O -0.973 6.973 15 O -0.958 6.958 16 C -0.635 4.635 17 C -0.008 4.008 18 C -0.068 4.068 19 C -0.006 4.006 20 N 0.022 4.978 21 O -0.140 6.140 22 O -0.181 6.181 23 C -0.079 4.079 24 C -0.024 4.024 25 C -0.079 4.079 26 N -0.295 5.295 27 H 0.278 0.722 28 H 0.183 0.817 29 H 0.431 0.569 30 H 0.198 0.802 31 H 0.192 0.808 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -12.264 -3.261 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.211 4.211 3 Si 0.832 3.168 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.486 4.486 8 H 0.156 0.844 9 N 0.065 4.935 10 C -0.212 4.212 11 C -0.148 4.148 12 N -0.761 5.761 13 S 2.807 3.193 14 O -0.963 6.963 15 O -0.948 6.948 16 C -0.721 4.721 17 C -0.027 4.027 18 C -0.087 4.087 19 C -0.088 4.088 20 N 0.542 4.458 21 O -0.362 6.362 22 O -0.391 6.391 23 C -0.099 4.099 24 C -0.044 4.044 25 C -0.256 4.256 26 N -0.126 5.126 27 H 0.087 0.913 28 H 0.200 0.800 29 H 0.269 0.731 30 H 0.215 0.785 31 H 0.209 0.791 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.073 -11.544 -2.135 11.789 hybrid contribution -0.409 0.349 -0.705 0.887 sum -1.482 -11.196 -2.840 11.645 Atomic orbital electron populations 1.70329 1.08154 1.29221 1.37016 1.26725 0.96421 1.03936 0.94036 0.84650 0.78593 0.74625 0.78885 1.19234 1.20209 1.16915 1.20597 0.93444 0.81037 1.53497 0.84383 1.44847 1.03582 1.05269 1.39770 1.22376 0.99552 0.84900 1.14325 1.16651 0.92436 0.82853 1.22826 1.51944 1.54412 1.11920 1.57831 1.01265 0.73175 0.71886 0.72998 1.93587 1.85746 1.81842 1.35142 1.93590 1.82847 1.34938 1.83428 1.31568 1.26411 1.06149 1.07949 1.21394 0.94159 0.95581 0.91565 1.21540 0.93285 0.94796 0.99090 1.21610 0.81655 1.03656 1.01900 1.43853 1.03536 0.99039 0.99382 1.94512 1.75494 1.44866 1.21376 1.94587 1.59565 1.29198 1.55799 1.21300 0.95965 0.98142 0.94460 1.21124 0.92160 0.93600 0.97523 1.24272 0.98225 0.92231 1.10903 1.78127 0.92272 1.16059 1.26096 0.91262 0.80019 0.73054 0.78527 0.79078 0.81278 0.82088 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.85 11.84 21.66 0.26 -43.59 16 2 C 0.00 0.07 5.50 84.95 0.47 0.53 16 3 Si 1.01 36.49 29.56 68.60 2.03 38.51 16 4 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.28 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 7 C -0.35 -17.53 10.24 84.01 0.86 -16.67 16 8 H 0.14 5.99 7.84 -2.91 -0.02 5.96 16 9 N -0.17 -8.39 3.74 -189.97 -0.71 -9.10 16 10 C -0.06 -2.51 11.50 83.35 0.96 -1.55 16 11 C -0.04 -1.51 6.41 37.73 0.24 -1.27 16 12 N -1.00 -27.80 5.93 -51.65 -0.31 -28.10 16 13 S 2.72 72.66 5.62 -56.49 -0.32 72.35 16 14 O -0.97 -33.92 17.00 -128.00 -2.18 -36.09 16 15 O -0.96 -25.07 17.28 -128.00 -2.21 -27.28 16 16 C -0.64 -14.92 5.22 22.27 0.12 -14.80 16 17 C -0.01 -0.13 9.52 22.27 0.21 0.08 16 18 C -0.07 -1.20 9.56 22.27 0.21 -0.99 16 19 C -0.01 -0.14 6.85 36.38 0.25 0.11 16 20 N 0.02 0.59 4.45 -46.46 -0.21 0.39 16 21 O -0.14 -3.63 18.45 18.88 0.35 -3.29 16 22 O -0.18 -5.34 18.45 18.89 0.35 -4.99 16 23 C -0.08 -1.92 9.56 22.27 0.21 -1.70 16 24 C -0.02 -0.63 6.35 22.27 0.14 -0.49 16 25 C -0.08 -3.41 10.71 85.42 0.92 -2.49 16 26 N -0.29 -15.46 10.42 -56.45 -0.59 -16.05 16 27 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.18 6.21 8.06 -2.91 -0.02 6.19 16 29 H 0.43 8.98 8.96 -96.74 -0.87 8.12 16 30 H 0.20 2.13 7.62 -2.91 -0.02 2.11 16 31 H 0.19 2.24 7.61 -2.91 -0.02 2.22 16 32 H 0.17 3.82 7.61 -2.91 -0.02 3.80 16 33 H 0.16 4.44 7.18 -2.91 -0.02 4.42 16 34 H 0.17 6.35 4.21 -2.91 -0.01 6.34 16 Total: -1.00 -71.09 322.87 1.39 -69.70 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.34 Total: 26.79 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.59 Total: -39.23 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -1.56 Total: -96.46 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -3.69 Total: -71.66 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 72.66 SS G_CDS: -0.32 Total: 72.35 kcal Total: -71.09 1.39 -69.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.273 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds