Wall clock time and date at job start Tue Mar 31 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47064 * 274.99764 * 3 2 1 5 5 H 1.48500 * 109.46934 * 34.99609 * 3 2 1 6 6 H 1.48491 * 109.47082 * 154.99673 * 3 2 1 7 7 C 1.38984 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00072 * 174.65307 * 7 2 1 9 9 N 1.37313 * 119.99978 * 354.92432 * 7 2 1 10 10 C 1.36593 * 126.07871 * 184.99677 * 9 7 2 11 11 C 1.35642 * 107.50307 * 179.97438 * 10 9 7 12 12 N 1.40576 * 126.07125 * 180.02562 * 11 10 9 13 13 S 1.65604 * 119.99346 * 134.11585 * 12 11 10 14 14 O 1.42105 * 106.39815 * 176.67065 * 13 12 11 15 15 O 1.42098 * 106.40652 * 309.59449 * 13 12 11 16 16 C 1.76202 * 107.21786 * 63.13590 * 13 12 11 17 17 C 1.38258 * 120.00121 * 242.61635 * 16 13 12 18 18 C 1.38209 * 120.00184 * 180.02562 * 17 16 13 19 19 C 1.38254 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.38213 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.00355 * 62.34146 * 16 13 12 22 22 N 1.48023 * 119.99746 * 0.02562 * 21 16 13 23 23 O 1.21799 * 120.00033 * 172.70664 * 22 21 16 24 24 O 1.21800 * 119.99745 * 352.70648 * 22 21 16 25 25 C 1.40648 * 107.84853 * 0.02562 * 11 10 9 26 26 N 1.30933 * 108.40685 * 359.75510 * 25 11 10 27 27 H 0.96998 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08003 * 126.25042 * 359.96284 * 10 9 7 29 29 H 0.96990 * 120.00338 * 314.11864 * 12 11 10 30 30 H 1.08000 * 119.99648 * 359.97438 * 17 16 13 31 31 H 1.08006 * 119.99579 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.99767 * 179.97438 * 19 18 17 33 33 H 1.07994 * 120.00020 * 179.97438 * 20 19 18 34 34 H 1.08007 * 125.79638 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3890 2.1073 -1.3947 5 1 1.5013 2.6198 0.8030 6 1 3.5934 1.4119 0.5917 7 6 2.0079 -1.2037 -0.0005 8 1 3.0843 -1.2057 -0.0877 9 7 1.3253 -2.3905 0.1041 10 6 1.8834 -3.6326 0.2123 11 6 0.8693 -4.5298 0.2926 12 7 1.0052 -5.9236 0.4152 13 16 0.0926 -6.7501 1.5228 14 8 0.3996 -8.1266 1.3485 15 8 0.2496 -6.0693 2.7602 16 6 -1.5956 -6.5542 1.0579 17 6 -2.4760 -5.9089 1.9065 18 6 -3.8003 -5.7557 1.5421 19 6 -4.2447 -6.2472 0.3287 20 6 -3.3644 -6.8913 -0.5202 21 6 -2.0386 -7.0405 -0.1576 22 7 -1.0949 -7.7264 -1.0686 23 8 -1.5085 -8.2711 -2.0765 24 8 0.0952 -7.7462 -0.8103 25 6 -0.3421 -3.8179 0.2313 26 7 -0.0670 -2.5423 0.1239 27 1 -0.4850 0.8400 0.0004 28 1 2.9393 -3.8589 0.2305 29 1 1.6333 -6.4012 -0.1487 30 1 -2.1289 -5.5253 2.8546 31 1 -4.4880 -5.2520 2.2053 32 1 -5.2797 -6.1278 0.0441 33 1 -3.7116 -7.2756 -1.4678 34 1 -1.3313 -4.2497 0.2709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747407786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:42 Heat of formation + Delta-G solvation = 57.918524 kcal Electronic energy + Delta-G solvation = -27558.738212 eV Core-core repulsion = 23397.312211 eV Total energy + Delta-G solvation = -4161.426000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33171 -39.72152 -39.50443 -37.17070 -36.45723 -35.60383 -34.55964 -33.08518 -32.36113 -31.88471 -30.36628 -27.49097 -26.76386 -24.92177 -23.83283 -22.78501 -20.91530 -20.20385 -19.81892 -19.08018 -18.77867 -18.00010 -17.62928 -17.27027 -16.85913 -16.12190 -15.67332 -15.62809 -15.28068 -14.79194 -14.53242 -14.09625 -13.64271 -13.44375 -13.10630 -13.01071 -12.35085 -12.19229 -11.95530 -11.83646 -11.79934 -11.69108 -11.47816 -11.34549 -11.28995 -11.15109 -11.01984 -10.89939 -10.58771 -10.22160 -9.97868 -9.79686 -9.39388 -8.96396 -8.29124 -7.08303 -6.68161 -4.38415 -0.49280 0.37860 0.59941 1.20390 1.22002 2.83562 2.88858 3.00362 3.05589 3.19344 3.45836 3.74949 3.81290 3.95535 4.05010 4.23499 4.49784 4.56824 4.57875 4.74823 4.90486 5.01422 5.15855 5.32128 5.49462 5.67465 5.86794 5.96503 6.22936 6.28899 6.35056 6.67813 7.02672 7.19057 7.44554 7.66380 7.76799 8.04761 8.53484 9.21531 9.43324 10.28272 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004071 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.382285 B = 6876.602998 C = 7323.149777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.321 4.321 8 H 0.120 0.880 9 N -0.139 5.139 10 C -0.051 4.051 11 C -0.051 4.051 12 N -1.000 6.000 13 S 2.704 3.296 14 O -0.949 6.949 15 O -0.946 6.946 16 C -0.620 4.620 17 C -0.014 4.014 18 C -0.087 4.087 19 C -0.071 4.071 20 C -0.071 4.071 21 C 0.046 3.954 22 N 0.020 4.980 23 O -0.143 6.143 24 O -0.139 6.139 25 C -0.071 4.071 26 N -0.245 5.245 27 H 0.275 0.725 28 H 0.154 0.846 29 H 0.421 0.579 30 H 0.167 0.833 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -9.102 1.255 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.138 0.862 9 N 0.093 4.907 10 C -0.203 4.203 11 C -0.159 4.159 12 N -0.758 5.758 13 S 2.786 3.214 14 O -0.939 6.939 15 O -0.935 6.935 16 C -0.701 4.701 17 C -0.034 4.034 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.091 4.091 21 C -0.037 4.037 22 N 0.540 4.460 23 O -0.361 6.361 24 O -0.354 6.354 25 C -0.248 4.248 26 N -0.076 5.076 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.259 0.741 30 H 0.184 0.816 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.830 -7.845 2.409 12.054 hybrid contribution 0.466 -0.213 -1.001 1.124 sum -8.364 -8.058 1.408 11.699 Atomic orbital electron populations 1.70198 1.06232 1.28140 1.35362 1.25653 0.95724 1.00399 0.95202 0.85780 0.79628 0.79749 0.78879 1.19622 1.20009 1.18566 1.19972 0.92233 0.80456 1.52724 0.86201 1.44583 1.03617 1.03974 1.38524 1.21679 0.97732 0.84983 1.15944 1.16761 0.93447 0.81322 1.24334 1.52121 1.54560 1.13023 1.56101 1.02043 0.72900 0.73163 0.73279 1.93620 1.82312 1.31796 1.86147 1.93596 1.84079 1.75376 1.40495 1.31343 1.29687 1.08262 1.00856 1.21214 0.92418 0.90899 0.98820 1.21798 0.96020 0.96246 0.96553 1.21503 1.00365 0.94147 0.92966 1.21167 0.89984 0.96538 1.01388 1.20500 0.90862 1.01441 0.90894 1.43617 1.01699 0.99543 1.01134 1.94510 1.82448 1.44045 1.15109 1.94471 0.99168 1.63805 1.77934 1.23474 0.96130 0.93093 1.12074 1.78174 0.91003 1.13822 1.24595 0.91415 0.82906 0.74071 0.81566 0.82944 0.82862 0.82285 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.50 11.83 55.49 0.66 -19.85 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.25 29.56 -169.99 -5.02 13.23 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.32 -8.19 10.24 -14.82 -0.15 -8.34 16 8 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 9 N -0.14 -3.66 3.74 -11.40 -0.04 -3.70 16 10 C -0.05 -1.19 11.50 -16.36 -0.19 -1.38 16 11 C -0.05 -1.12 6.43 -83.86 -0.54 -1.66 16 12 N -1.00 -18.60 4.60 32.32 0.15 -18.45 16 13 S 2.70 48.42 4.80 -107.50 -0.52 47.90 16 14 O -0.95 -17.99 15.39 -67.22 -1.03 -19.02 16 15 O -0.95 -18.88 16.74 -57.17 -0.96 -19.84 16 16 C -0.62 -9.55 3.95 -39.58 -0.16 -9.71 16 17 C -0.01 -0.18 8.78 -39.58 -0.35 -0.53 16 18 C -0.09 -0.81 10.05 -39.59 -0.40 -1.20 16 19 C -0.07 -0.60 10.05 -39.58 -0.40 -1.00 16 20 C -0.07 -0.79 9.56 -39.58 -0.38 -1.16 16 21 C 0.05 0.68 6.80 -79.95 -0.54 0.14 16 22 N 0.02 0.34 4.45 33.96 0.15 0.49 16 23 O -0.14 -2.30 18.47 -29.46 -0.54 -2.85 16 24 O -0.14 -2.49 11.71 -37.27 -0.44 -2.92 16 25 C -0.07 -1.66 11.29 -17.03 -0.19 -1.86 16 26 N -0.24 -6.61 10.41 30.81 0.32 -6.29 16 27 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.15 3.02 8.06 -52.48 -0.42 2.60 16 29 H 0.42 6.98 7.69 -34.47 -0.27 6.71 16 30 H 0.17 1.98 7.34 -52.49 -0.39 1.60 16 31 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.16 1.40 7.63 -52.49 -0.40 1.00 16 34 H 0.14 2.93 5.76 -52.48 -0.30 2.63 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -34.42 315.89 -8.07 -42.49 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.17 Total: 9.66 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -3.39 Total: -25.62 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 1.23 Total: -47.80 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -2.97 Total: -44.63 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Atomic # 16 Polarization: 48.42 SS G_CDS: -0.52 Total: 47.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.42 -8.07 -42.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747407786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.410 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds