Wall clock time and date at job start Tue Mar 31 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47064 * 274.99764 * 3 2 1 5 5 H 1.48500 * 109.46934 * 34.99609 * 3 2 1 6 6 H 1.48491 * 109.47082 * 154.99673 * 3 2 1 7 7 C 1.38984 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00072 * 174.65307 * 7 2 1 9 9 N 1.37313 * 119.99978 * 354.92432 * 7 2 1 10 10 C 1.36593 * 126.07871 * 184.99677 * 9 7 2 11 11 C 1.35642 * 107.50307 * 179.97438 * 10 9 7 12 12 N 1.40576 * 126.07125 * 180.02562 * 11 10 9 13 13 S 1.65604 * 119.99346 * 134.11585 * 12 11 10 14 14 O 1.42105 * 106.39815 * 176.67065 * 13 12 11 15 15 O 1.42098 * 106.40652 * 309.59449 * 13 12 11 16 16 C 1.76202 * 107.21786 * 63.13590 * 13 12 11 17 17 C 1.38258 * 120.00121 * 242.61635 * 16 13 12 18 18 C 1.38209 * 120.00184 * 180.02562 * 17 16 13 19 19 C 1.38254 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.38213 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.00355 * 62.34146 * 16 13 12 22 22 N 1.48023 * 119.99746 * 0.02562 * 21 16 13 23 23 O 1.21799 * 120.00033 * 172.70664 * 22 21 16 24 24 O 1.21800 * 119.99745 * 352.70648 * 22 21 16 25 25 C 1.40648 * 107.84853 * 0.02562 * 11 10 9 26 26 N 1.30933 * 108.40685 * 359.75510 * 25 11 10 27 27 H 0.96998 * 119.99769 * 359.97438 * 1 2 3 28 28 H 1.08003 * 126.25042 * 359.96284 * 10 9 7 29 29 H 0.96990 * 120.00338 * 314.11864 * 12 11 10 30 30 H 1.08000 * 119.99648 * 359.97438 * 17 16 13 31 31 H 1.08006 * 119.99579 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.99767 * 179.97438 * 19 18 17 33 33 H 1.07994 * 120.00020 * 179.97438 * 20 19 18 34 34 H 1.08007 * 125.79638 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3890 2.1073 -1.3947 5 1 1.5013 2.6198 0.8030 6 1 3.5934 1.4119 0.5917 7 6 2.0079 -1.2037 -0.0005 8 1 3.0843 -1.2057 -0.0877 9 7 1.3253 -2.3905 0.1041 10 6 1.8834 -3.6326 0.2123 11 6 0.8693 -4.5298 0.2926 12 7 1.0052 -5.9236 0.4152 13 16 0.0926 -6.7501 1.5228 14 8 0.3996 -8.1266 1.3485 15 8 0.2496 -6.0693 2.7602 16 6 -1.5956 -6.5542 1.0579 17 6 -2.4760 -5.9089 1.9065 18 6 -3.8003 -5.7557 1.5421 19 6 -4.2447 -6.2472 0.3287 20 6 -3.3644 -6.8913 -0.5202 21 6 -2.0386 -7.0405 -0.1576 22 7 -1.0949 -7.7264 -1.0686 23 8 -1.5085 -8.2711 -2.0765 24 8 0.0952 -7.7462 -0.8103 25 6 -0.3421 -3.8179 0.2313 26 7 -0.0670 -2.5423 0.1239 27 1 -0.4850 0.8400 0.0004 28 1 2.9393 -3.8589 0.2305 29 1 1.6333 -6.4012 -0.1487 30 1 -2.1289 -5.5253 2.8546 31 1 -4.4880 -5.2520 2.2053 32 1 -5.2797 -6.1278 0.0441 33 1 -3.7116 -7.2756 -1.4678 34 1 -1.3313 -4.2497 0.2709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747407786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:42 Heat of formation + Delta-G solvation = 33.715979 kcal Electronic energy + Delta-G solvation = -27559.787713 eV Core-core repulsion = 23397.312211 eV Total energy + Delta-G solvation = -4162.475502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.52154 -41.50847 -40.48563 -38.57063 -37.77011 -37.08358 -36.24371 -34.84025 -33.30948 -32.83294 -32.22308 -29.28893 -27.86420 -26.76052 -24.77998 -23.83923 -22.72430 -21.82326 -21.12128 -20.48825 -20.00201 -19.55090 -18.84641 -18.57826 -18.33468 -17.62036 -17.30780 -16.61257 -16.50715 -15.94466 -15.76088 -15.64545 -15.32193 -15.09657 -14.47334 -13.89238 -13.79456 -13.57932 -13.43007 -13.34774 -13.26492 -13.13574 -12.93798 -12.82615 -12.75402 -12.51827 -12.43849 -12.14594 -12.07638 -11.74790 -11.18403 -10.92050 -10.80321 -10.71463 -10.19249 -8.88105 -8.50885 -6.30003 -1.58386 -0.81374 -0.47351 0.12120 0.13765 1.26300 1.41121 1.57564 1.68557 1.76300 2.01374 2.08850 2.18494 2.53454 2.77618 2.97239 3.05218 3.37392 3.59840 3.77599 3.81217 3.94953 4.13843 4.33371 4.43025 4.49604 4.64554 4.78333 4.86968 4.89193 4.98061 5.20671 5.33808 5.39482 5.87300 6.03278 6.24659 6.40066 6.70689 7.37105 7.55161 8.48654 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004071 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.382285 B = 6876.602998 C = 7323.149777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.001 3.999 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.355 4.355 8 H 0.137 0.863 9 N -0.163 5.163 10 C -0.064 4.064 11 C -0.040 4.040 12 N -1.000 6.000 13 S 2.714 3.286 14 O -0.967 6.967 15 O -0.977 6.977 16 C -0.643 4.643 17 C -0.029 4.029 18 C -0.073 4.073 19 C -0.049 4.049 20 C -0.065 4.065 21 C 0.017 3.983 22 N 0.018 4.982 23 O -0.126 6.126 24 O -0.191 6.191 25 C -0.073 4.073 26 N -0.289 5.289 27 H 0.279 0.721 28 H 0.180 0.820 29 H 0.427 0.573 30 H 0.166 0.834 31 H 0.197 0.803 32 H 0.208 0.792 33 H 0.184 0.816 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 -8.586 1.044 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.212 4.212 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.486 4.486 8 H 0.155 0.845 9 N 0.068 4.932 10 C -0.215 4.215 11 C -0.148 4.148 12 N -0.757 5.757 13 S 2.802 3.198 14 O -0.957 6.957 15 O -0.967 6.967 16 C -0.730 4.730 17 C -0.048 4.048 18 C -0.091 4.091 19 C -0.067 4.067 20 C -0.085 4.085 21 C -0.066 4.066 22 N 0.534 4.466 23 O -0.351 6.351 24 O -0.394 6.394 25 C -0.250 4.250 26 N -0.120 5.120 27 H 0.089 0.911 28 H 0.197 0.803 29 H 0.267 0.733 30 H 0.183 0.817 31 H 0.214 0.786 32 H 0.225 0.775 33 H 0.201 0.799 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.927 -7.346 2.251 13.358 hybrid contribution 0.891 -0.538 -0.963 1.418 sum -10.036 -7.884 1.288 12.827 Atomic orbital electron populations 1.70330 1.08128 1.29288 1.36883 1.26764 0.96527 1.03930 0.93957 0.84618 0.78485 0.74385 0.79031 1.18960 1.19850 1.17198 1.20621 0.93353 0.80978 1.53669 0.84518 1.44830 1.03597 1.04946 1.39820 1.22313 0.99392 0.84604 1.15240 1.16818 0.92836 0.82566 1.22580 1.52100 1.55624 1.11645 1.56337 1.01263 0.73670 0.72396 0.72464 1.93589 1.83410 1.32470 1.86238 1.93555 1.85288 1.75766 1.42093 1.30744 1.27955 1.11754 1.02531 1.21517 0.94013 0.90731 0.98576 1.22368 0.94733 0.94663 0.97366 1.22198 1.02126 0.90952 0.91390 1.21729 0.88407 0.95639 1.02733 1.20743 0.91847 1.03256 0.90750 1.43966 1.01913 0.99400 1.01359 1.94456 1.82255 1.43189 1.15247 1.94464 1.00253 1.65939 1.78745 1.23856 0.97593 0.92434 1.11110 1.78065 0.92078 1.15624 1.26252 0.91128 0.80306 0.73297 0.81662 0.78618 0.77546 0.79860 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.27 11.83 21.66 0.26 -44.01 16 2 C 0.00 0.03 5.50 84.95 0.47 0.50 16 3 Si 1.02 37.25 29.56 68.60 2.03 39.28 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 7 C -0.35 -18.36 10.24 84.01 0.86 -17.50 16 8 H 0.14 6.26 7.84 -2.91 -0.02 6.24 16 9 N -0.16 -8.78 3.74 -189.98 -0.71 -9.49 16 10 C -0.06 -3.02 11.50 83.35 0.96 -2.06 16 11 C -0.04 -1.79 6.43 37.72 0.24 -1.55 16 12 N -1.00 -38.40 4.60 -51.65 -0.24 -38.64 16 13 S 2.71 100.27 4.80 -56.49 -0.27 100.00 16 14 O -0.97 -38.22 15.39 -118.39 -1.82 -40.04 16 15 O -0.98 -40.37 16.74 -128.00 -2.14 -42.52 16 16 C -0.64 -19.48 3.95 22.27 0.09 -19.39 16 17 C -0.03 -0.68 8.78 22.27 0.20 -0.48 16 18 C -0.07 -1.01 10.05 22.27 0.22 -0.79 16 19 C -0.05 -0.55 10.05 22.27 0.22 -0.33 16 20 C -0.07 -1.20 9.56 22.27 0.21 -0.99 16 21 C 0.02 0.49 6.80 36.37 0.25 0.74 16 22 N 0.02 0.59 4.45 -46.46 -0.21 0.38 16 23 O -0.13 -3.95 18.47 18.89 0.35 -3.60 16 24 O -0.19 -7.08 11.71 26.35 0.31 -6.77 16 25 C -0.07 -3.47 11.29 85.42 0.96 -2.51 16 26 N -0.29 -15.94 10.41 -56.45 -0.59 -16.52 16 27 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.18 7.15 8.06 -2.91 -0.02 7.13 16 29 H 0.43 14.90 7.69 -96.75 -0.74 14.16 16 30 H 0.17 3.84 7.34 -2.91 -0.02 3.82 16 31 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.18 2.43 7.63 -2.91 -0.02 2.41 16 34 H 0.17 6.76 5.76 -2.91 -0.02 6.74 16 Total: -1.00 -79.26 315.89 2.10 -77.16 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.45 Total: 29.13 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 4.68 Total: -44.36 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -1.49 Total: -108.29 kcal Atomic # 8 Polarization: -89.62 SS G_CDS: -3.31 Total: -92.93 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: 100.27 SS G_CDS: -0.27 Total: 100.00 kcal Total: -79.26 2.10 -77.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747407786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.878 kcal (2) G-P(sol) polarization free energy of solvation -79.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds