Wall clock time and date at job start Tue Mar 31 2020 20:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47260 * 239.99470 * 3 2 1 5 5 H 1.48501 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47265 * 119.99714 * 3 2 1 7 7 C 1.38947 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00606 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99514 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00450 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99532 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.34092 * 120.48465 * 269.72715 * 13 12 10 15 15 O 1.21653 * 126.98944 * 359.97438 * 14 13 12 16 16 S 1.77330 * 106.01799 * 179.88031 * 14 13 12 17 17 C 1.77479 * 94.31918 * 0.31287 * 16 14 13 18 18 C 1.36334 * 127.81040 * 179.78240 * 17 16 14 19 19 C 1.41416 * 120.00099 * 171.48294 * 18 17 16 20 20 C 1.37126 * 125.48022 * 139.59920 * 19 18 17 21 21 C 1.37472 * 113.18786 * 179.79537 * 20 19 18 22 22 C 1.33822 * 115.13953 * 0.50249 * 21 20 19 23 23 S 1.70601 * 111.03579 * 359.71715 * 22 21 20 24 24 C 1.32185 * 120.48469 * 90.00166 * 13 12 10 25 25 O 1.21785 * 121.87288 * 0.02562 * 24 13 12 26 26 H 0.96993 * 120.00613 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00083 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47240 * 60.00350 * 12 10 9 29 29 H 1.09001 * 109.47462 * 300.00012 * 12 10 9 30 30 H 1.08000 * 120.00320 * 351.47463 * 18 17 16 31 31 H 1.07997 * 123.40574 * 359.96914 * 20 19 18 32 32 H 1.08008 * 122.42950 * 180.22191 * 21 20 19 33 33 H 1.08000 * 124.48780 * 179.70334 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2126 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 2.6331 -6.4970 -1.1555 15 8 2.3250 -6.1466 -2.2790 16 16 3.7536 -7.7984 -0.7134 17 6 3.5517 -7.5608 1.0338 18 6 4.1453 -8.2552 2.0458 19 6 4.0075 -7.8136 3.3822 20 6 3.8094 -8.6228 4.4714 21 6 3.7146 -7.9265 5.6529 22 6 3.8195 -6.5972 5.5394 23 16 4.0552 -6.1381 3.9133 24 6 2.6327 -6.4861 1.1392 25 8 2.2660 -6.0570 2.2183 26 1 -0.4851 0.8399 -0.0004 27 1 0.3535 -2.3906 0.0005 28 1 0.6171 -4.9209 -0.8886 29 1 0.6177 -4.9205 0.8914 30 1 4.7207 -9.1426 1.8270 31 1 3.7381 -9.6985 4.4078 32 1 3.5618 -8.4164 6.6033 33 1 3.7623 -5.9063 6.3675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749608386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:21 Heat of formation + Delta-G solvation = -15.088164 kcal Electronic energy + Delta-G solvation = -23871.409698 eV Core-core repulsion = 20117.278009 eV Total energy + Delta-G solvation = -3754.131688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71752 -38.91703 -38.09159 -37.92429 -35.65256 -34.32353 -33.98257 -31.43571 -30.16402 -28.30452 -25.56158 -24.94429 -24.15143 -22.82234 -20.36075 -19.89991 -19.40003 -18.67624 -18.10636 -17.56689 -17.12131 -16.17977 -15.93585 -15.57008 -15.52092 -15.14190 -14.53408 -14.45167 -14.17463 -14.01135 -13.77841 -13.36715 -13.29271 -12.82677 -12.65844 -12.45602 -11.82921 -11.73678 -11.63305 -11.16603 -11.07904 -10.74142 -10.57518 -10.49308 -10.30206 -10.12723 -9.97105 -9.60701 -9.12535 -8.51031 -8.26602 -8.08615 -7.83605 -6.50167 -3.91639 -0.25160 0.70225 1.18191 1.39289 1.61038 1.87503 2.09150 2.59785 2.74556 3.00563 3.14804 3.22292 3.26867 3.71413 4.10652 4.14088 4.71491 4.79468 4.95575 5.05682 5.13500 5.22434 5.29125 5.37731 5.44300 5.54288 5.61840 5.87725 6.09974 6.17344 6.30705 6.69843 6.97875 7.47354 7.51494 7.92718 8.46604 9.06213 9.38718 9.87794 10.66812 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003981 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.822729 B = 7032.192181 C = 8736.789588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.548 5.548 10 C 0.426 3.574 11 O -0.587 6.587 12 C 0.087 3.913 13 N -0.543 5.543 14 C 0.548 3.452 15 O -0.425 6.425 16 S -0.035 6.035 17 C -0.238 4.238 18 C 0.113 3.887 19 C -0.249 4.249 20 C -0.083 4.083 21 C -0.162 4.162 22 C -0.262 4.262 23 S 0.326 5.674 24 C 0.556 3.444 25 O -0.460 6.460 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -18.460 7.946 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.183 5.183 10 C 0.211 3.789 11 O -0.473 6.473 12 C -0.041 4.041 13 N -0.287 5.287 14 C 0.227 3.773 15 O -0.297 6.297 16 S 0.203 5.797 17 C -0.356 4.356 18 C 0.084 3.916 19 C -0.369 4.369 20 C -0.118 4.118 21 C -0.193 4.193 22 C -0.401 4.401 23 S 0.600 5.400 24 C 0.347 3.653 25 O -0.335 6.335 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.009 -17.181 6.353 19.278 hybrid contribution -1.271 0.356 1.479 1.983 sum 4.738 -16.825 7.832 19.154 Atomic orbital electron populations 1.69595 1.05981 1.28587 1.49506 1.25293 0.95660 0.99832 0.96814 0.85885 0.78808 0.80177 0.79190 1.19757 1.20817 1.19778 1.19664 0.93403 0.81919 1.48138 0.87821 1.41735 1.09305 1.04325 1.62971 1.19725 0.88509 0.84757 0.85943 1.90543 1.13450 1.86803 1.56462 1.21686 0.91093 0.85218 1.06077 1.45872 1.42945 1.32601 1.07239 1.21958 0.83566 0.85613 0.86157 1.90919 1.57220 1.61450 1.20075 1.86057 1.53631 1.41407 0.98631 1.22668 1.09210 1.06298 0.97444 1.20063 0.89117 0.94531 0.87908 1.22442 1.18530 0.99360 0.96564 1.20749 1.00340 1.00300 0.90372 1.19827 1.07060 0.93110 0.99292 1.25706 1.09314 1.00671 1.04436 1.84040 1.58993 1.02607 0.94396 1.16301 0.82251 0.82681 0.84107 1.90939 1.56318 1.60898 1.25369 0.91573 0.77176 0.86980 0.86516 0.82525 0.83821 0.84664 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.03 0.71 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C 0.43 10.26 7.85 -10.98 -0.09 10.18 16 11 O -0.59 -16.14 16.01 5.55 0.09 -16.05 16 12 C 0.09 1.62 5.77 -5.19 -0.03 1.59 16 13 N -0.54 -9.73 1.97 -124.01 -0.24 -9.97 16 14 C 0.55 9.62 8.45 53.75 0.45 10.07 16 15 O -0.42 -8.36 17.45 5.23 0.09 -8.27 16 16 S -0.04 -0.47 23.20 -107.50 -2.49 -2.97 16 17 C -0.24 -3.20 6.32 -38.91 -0.25 -3.45 16 18 C 0.11 1.17 9.92 -39.06 -0.39 0.79 16 19 C -0.25 -2.85 5.39 -38.78 -0.21 -3.06 16 20 C -0.08 -0.79 10.26 -40.26 -0.41 -1.21 16 21 C -0.16 -1.58 10.14 -41.41 -0.42 -2.00 16 22 C -0.26 -2.89 10.92 29.18 0.32 -2.57 16 23 S 0.33 4.42 19.18 -107.50 -2.06 2.36 16 24 C 0.56 9.35 7.19 -16.04 -0.12 9.24 16 25 O -0.46 -8.26 12.17 5.11 0.06 -8.20 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 28 H 0.11 1.85 7.72 -51.93 -0.40 1.45 16 29 H 0.12 1.93 7.50 -51.93 -0.39 1.54 16 30 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -33.24 327.38 -7.67 -40.91 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.31 Total: 7.06 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -1.37 Total: 11.64 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.42 Total: -47.31 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: 0.24 Total: -32.52 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -4.56 Total: -0.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.24 -7.67 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.825 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds