Wall clock time and date at job start Tue Mar 31 2020 20:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99625 * 2 1 4 4 H 1.48500 * 109.47260 * 239.99470 * 3 2 1 5 5 H 1.48501 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47265 * 119.99714 * 3 2 1 7 7 C 1.38947 * 120.00535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00606 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99514 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00450 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99532 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.34092 * 120.48465 * 269.72715 * 13 12 10 15 15 O 1.21653 * 126.98944 * 359.97438 * 14 13 12 16 16 S 1.77330 * 106.01799 * 179.88031 * 14 13 12 17 17 C 1.77479 * 94.31918 * 0.31287 * 16 14 13 18 18 C 1.36334 * 127.81040 * 179.78240 * 17 16 14 19 19 C 1.41416 * 120.00099 * 171.48294 * 18 17 16 20 20 C 1.37126 * 125.48022 * 139.59920 * 19 18 17 21 21 C 1.37472 * 113.18786 * 179.79537 * 20 19 18 22 22 C 1.33822 * 115.13953 * 0.50249 * 21 20 19 23 23 S 1.70601 * 111.03579 * 359.71715 * 22 21 20 24 24 C 1.32185 * 120.48469 * 90.00166 * 13 12 10 25 25 O 1.21785 * 121.87288 * 0.02562 * 24 13 12 26 26 H 0.96993 * 120.00613 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00083 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47240 * 60.00350 * 12 10 9 29 29 H 1.09001 * 109.47462 * 300.00012 * 12 10 9 30 30 H 1.08000 * 120.00320 * 351.47463 * 18 17 16 31 31 H 1.07997 * 123.40574 * 359.96914 * 20 19 18 32 32 H 1.08008 * 122.42950 * 180.22191 * 21 20 19 33 33 H 1.08000 * 124.48780 * 179.70334 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2126 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 2.6331 -6.4970 -1.1555 15 8 2.3250 -6.1466 -2.2790 16 16 3.7536 -7.7984 -0.7134 17 6 3.5517 -7.5608 1.0338 18 6 4.1453 -8.2552 2.0458 19 6 4.0075 -7.8136 3.3822 20 6 3.8094 -8.6228 4.4714 21 6 3.7146 -7.9265 5.6529 22 6 3.8195 -6.5972 5.5394 23 16 4.0552 -6.1381 3.9133 24 6 2.6327 -6.4861 1.1392 25 8 2.2660 -6.0570 2.2183 26 1 -0.4851 0.8399 -0.0004 27 1 0.3535 -2.3906 0.0005 28 1 0.6171 -4.9209 -0.8886 29 1 0.6177 -4.9205 0.8914 30 1 4.7207 -9.1426 1.8270 31 1 3.7381 -9.6985 4.4078 32 1 3.5618 -8.4164 6.6033 33 1 3.7623 -5.9063 6.3675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:21 Heat of formation + Delta-G solvation = -37.803139 kcal Electronic energy + Delta-G solvation = -23872.394693 eV Core-core repulsion = 20117.278009 eV Total energy + Delta-G solvation = -3755.116683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.99713 -40.22392 -39.91201 -38.83884 -37.00130 -36.07154 -35.23483 -33.46420 -31.49001 -29.46096 -27.09360 -26.37433 -25.33191 -23.99719 -21.74088 -21.03149 -20.79533 -20.08651 -19.70168 -18.77698 -18.63709 -17.40732 -17.23765 -16.93871 -16.82247 -16.44238 -16.14632 -15.88867 -15.75110 -15.46133 -15.32486 -14.54429 -14.28281 -14.13976 -13.60744 -13.60081 -13.41979 -13.37686 -12.92074 -12.80986 -12.53228 -12.17285 -12.12356 -11.94205 -11.67989 -11.61601 -11.40078 -11.18185 -10.47302 -10.14448 -10.00374 -9.23176 -8.81805 -8.55018 -6.05377 -1.21084 -0.46873 0.17153 0.34404 0.58449 0.93030 1.15623 1.33458 1.37808 1.46913 1.52047 1.72434 1.84316 1.94727 2.24994 3.01163 3.04041 3.12305 3.82250 3.87096 3.96269 4.12066 4.17650 4.24392 4.30096 4.48652 4.62667 4.76658 5.09392 5.32519 5.32887 5.42642 5.57157 5.72169 5.85441 6.28303 6.44667 6.99260 7.36631 7.90000 8.61687 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003981 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.822729 B = 7032.192181 C = 8736.789588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.556 5.556 10 C 0.424 3.576 11 O -0.626 6.626 12 C 0.097 3.903 13 N -0.554 5.554 14 C 0.523 3.477 15 O -0.466 6.466 16 S 0.035 5.965 17 C -0.283 4.283 18 C 0.161 3.839 19 C -0.263 4.263 20 C -0.055 4.055 21 C -0.161 4.161 22 C -0.252 4.252 23 S 0.218 5.782 24 C 0.545 3.455 25 O -0.482 6.482 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.210 0.790 31 H 0.187 0.813 32 H 0.168 0.832 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -21.109 9.671 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.097 0.903 9 N -0.192 5.192 10 C 0.210 3.790 11 O -0.514 6.514 12 C -0.031 4.031 13 N -0.297 5.297 14 C 0.205 3.795 15 O -0.341 6.341 16 S 0.273 5.727 17 C -0.400 4.400 18 C 0.133 3.867 19 C -0.383 4.383 20 C -0.089 4.089 21 C -0.192 4.192 22 C -0.390 4.390 23 S 0.492 5.508 24 C 0.338 3.662 25 O -0.359 6.359 26 H 0.091 0.909 27 H 0.234 0.766 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.226 0.774 31 H 0.205 0.795 32 H 0.185 0.815 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.653 -19.868 8.109 22.467 hybrid contribution -1.403 1.008 1.229 2.120 sum 5.250 -18.860 9.338 21.690 Atomic orbital electron populations 1.69653 1.06864 1.29781 1.49025 1.26086 0.96580 1.02465 0.95609 0.84969 0.77855 0.76368 0.79035 1.19685 1.19021 1.19547 1.19629 0.92733 0.83659 1.50770 0.90277 1.41778 1.09465 1.04417 1.63520 1.20642 0.88373 0.86145 0.83831 1.90500 1.15451 1.87760 1.57656 1.21514 0.91000 0.82858 1.07751 1.46089 1.43116 1.32288 1.08205 1.22681 0.84347 0.86854 0.85643 1.90883 1.58937 1.63334 1.20994 1.85634 1.51054 1.37983 0.98011 1.22639 1.11617 1.07426 0.98353 1.20729 0.85446 0.94009 0.86489 1.22576 1.20476 0.97483 0.97749 1.21297 0.96394 1.02104 0.89069 1.20316 1.05506 0.92536 1.00880 1.25884 1.08576 1.01767 1.02822 1.84528 1.62031 1.06407 0.97856 1.16860 0.82691 0.83243 0.83404 1.90946 1.57315 1.61955 1.25726 0.90917 0.76615 0.85172 0.84737 0.77372 0.79546 0.81489 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.53 13.05 21.66 0.28 -49.24 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -19.67 9.68 84.04 0.81 -18.85 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -29.59 5.29 -306.98 -1.62 -31.22 16 10 C 0.42 21.48 7.85 87.66 0.69 22.17 16 11 O -0.63 -36.39 16.01 -3.06 -0.05 -36.44 16 12 C 0.10 3.75 5.77 85.63 0.49 4.24 16 13 N -0.55 -20.42 1.97 -784.47 -1.55 -21.96 16 14 C 0.52 18.82 8.45 129.90 1.10 19.92 16 15 O -0.47 -19.10 17.45 -4.20 -0.07 -19.17 16 16 S 0.04 0.90 23.20 -56.49 -1.31 -0.41 16 17 C -0.28 -7.17 6.32 22.71 0.14 -7.03 16 18 C 0.16 2.77 9.92 22.61 0.22 3.00 16 19 C -0.26 -5.29 5.39 22.79 0.12 -5.17 16 20 C -0.05 -0.77 10.26 21.83 0.22 -0.55 16 21 C -0.16 -2.51 10.14 21.08 0.21 -2.29 16 22 C -0.25 -5.14 10.92 66.82 0.73 -4.41 16 23 S 0.22 5.96 19.18 -56.49 -1.08 4.88 16 24 C 0.55 18.54 7.19 85.52 0.61 19.16 16 25 O -0.48 -17.80 12.17 -4.62 -0.06 -17.86 16 26 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 28 H 0.13 4.49 7.72 -2.39 -0.02 4.47 16 29 H 0.13 4.63 7.50 -2.39 -0.02 4.62 16 30 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -77.05 327.38 2.87 -74.19 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.47 Total: 21.62 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 5.83 Total: 30.30 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -2.89 Total: -102.42 kcal Atomic # 8 Polarization: -73.29 SS G_CDS: -0.18 Total: -73.47 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -2.39 Total: 4.47 kcal Total: -77.05 2.87 -74.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.384 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds