Wall clock time and date at job start Tue Mar 31 2020 20:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47224 * 269.99952 * 3 2 1 5 5 H 1.48494 * 109.47158 * 30.00071 * 3 2 1 6 6 H 1.48499 * 109.47014 * 150.00058 * 3 2 1 7 7 C 1.38949 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00365 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99699 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99898 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99969 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99782 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.34082 * 120.48756 * 270.02004 * 13 12 10 15 15 O 1.21659 * 126.98766 * 359.97438 * 14 13 12 16 16 S 1.77333 * 106.02411 * 179.74781 * 14 13 12 17 17 C 1.77479 * 94.31569 * 0.30237 * 16 14 13 18 18 C 1.36335 * 127.81287 * 179.97438 * 17 16 14 19 19 C 1.41409 * 119.99939 * 359.39416 * 18 17 16 20 20 C 1.37130 * 125.48448 * 180.27528 * 19 18 17 21 21 C 1.37470 * 113.19585 * 180.02562 * 20 19 18 22 22 C 1.33821 * 115.13644 * 359.97438 * 21 20 19 23 23 S 1.70603 * 111.03691 * 359.72910 * 22 21 20 24 24 C 1.32181 * 120.48518 * 89.99895 * 13 12 10 25 25 O 1.21789 * 121.87569 * 0.02562 * 24 13 12 26 26 H 0.97002 * 119.99728 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00138 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47505 * 59.99956 * 12 10 9 29 29 H 1.08994 * 109.47279 * 299.99572 * 12 10 9 30 30 H 1.08002 * 120.00470 * 179.68018 * 18 17 16 31 31 H 1.08003 * 123.39889 * 359.97438 * 20 19 18 32 32 H 1.07999 * 122.42783 * 180.02562 * 21 20 19 33 33 H 1.08001 * 124.48132 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0001 12 6 5.5606 -2.3706 -0.0011 13 7 6.0489 -3.7519 -0.0005 14 6 6.2753 -4.3929 1.1553 15 8 6.1200 -3.9530 2.2789 16 16 6.8407 -6.0144 0.7131 17 6 6.7433 -5.7180 -1.0341 18 6 7.0468 -6.5795 -2.0462 19 6 7.5130 -7.8815 -1.7507 20 6 7.8549 -8.8337 -2.6762 21 6 8.2764 -10.0131 -2.1094 22 6 8.2816 -10.0306 -0.7713 23 16 7.7549 -8.5370 -0.1371 24 6 6.2724 -4.3846 -1.1393 25 8 6.0845 -3.8523 -2.2184 26 1 -0.4850 0.8401 -0.0004 27 1 3.8648 -0.3634 -0.0014 28 1 5.9240 -1.8568 0.8889 29 1 5.9239 -1.8569 -0.8910 30 1 6.9356 -6.2662 -3.0738 31 1 7.7980 -8.6736 -3.7428 32 1 8.5818 -10.8634 -2.7010 33 1 8.5843 -10.8767 -0.1721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608387.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:24 Heat of formation + Delta-G solvation = -46.225196 kcal Electronic energy + Delta-G solvation = -23356.692937 eV Core-core repulsion = 19601.211046 eV Total energy + Delta-G solvation = -3755.481891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.023 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.02641 -40.26693 -40.01921 -39.02425 -37.02400 -36.14485 -35.40869 -33.91848 -31.73888 -29.56186 -27.11166 -26.44938 -25.33096 -23.78666 -21.80555 -21.36075 -20.96850 -20.46751 -19.61695 -18.78211 -18.59496 -17.87307 -17.31870 -16.95030 -16.80876 -16.62397 -16.04223 -15.97347 -15.49906 -15.43547 -15.26090 -14.70821 -14.48355 -14.36608 -14.26333 -13.67269 -13.51494 -13.34942 -12.96051 -12.70136 -12.50352 -12.36785 -12.28778 -12.06183 -11.78073 -11.67193 -11.62136 -10.93856 -10.61535 -10.37769 -10.33908 -9.55603 -8.88483 -8.49596 -6.12752 -1.31948 -0.79691 0.10622 0.26106 0.57250 0.76812 1.16071 1.27354 1.30968 1.41771 1.49414 1.67365 1.71691 1.97480 2.17859 2.71786 2.97308 3.06016 3.73113 3.85044 3.92719 4.04840 4.07307 4.09687 4.20081 4.45906 4.56753 4.72275 5.05345 5.23499 5.37561 5.42453 5.44579 5.65921 5.80704 6.22702 6.44485 6.72325 7.20762 7.72388 8.67413 Molecular weight = 338.02amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.002792 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.363618 B =10026.658998 C =10339.762643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.964 3.036 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.230 1.230 7 C -0.334 4.334 8 H 0.055 0.945 9 N -0.573 5.573 10 C 0.433 3.567 11 O -0.619 6.619 12 C 0.092 3.908 13 N -0.555 5.555 14 C 0.529 3.471 15 O -0.459 6.459 16 S 0.008 5.992 17 C -0.292 4.292 18 C 0.157 3.843 19 C -0.268 4.268 20 C -0.040 4.040 21 C -0.160 4.160 22 C -0.210 4.210 23 S 0.190 5.810 24 C 0.566 3.434 25 O -0.505 6.505 26 H 0.283 0.717 27 H 0.394 0.606 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.191 0.809 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.208 -17.173 -5.011 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.783 3.217 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.153 1.153 7 C -0.463 4.463 8 H 0.073 0.927 9 N -0.214 5.214 10 C 0.219 3.781 11 O -0.505 6.505 12 C -0.036 4.036 13 N -0.298 5.298 14 C 0.210 3.790 15 O -0.334 6.334 16 S 0.245 5.755 17 C -0.409 4.409 18 C 0.129 3.871 19 C -0.385 4.385 20 C -0.075 4.075 21 C -0.189 4.189 22 C -0.349 4.349 23 S 0.461 5.539 24 C 0.359 3.641 25 O -0.383 6.383 26 H 0.092 0.908 27 H 0.230 0.770 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.208 0.792 31 H 0.201 0.799 32 H 0.193 0.807 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 24.575 -17.676 -2.630 30.386 hybrid contribution -0.787 1.540 -1.762 2.469 sum 23.788 -16.136 -4.391 29.078 Atomic orbital electron populations 1.69791 1.08151 1.29633 1.48960 1.26159 0.96538 1.02816 0.95399 0.85385 0.79619 0.76433 0.80289 1.17709 1.19482 1.15324 1.18982 0.80942 0.95187 1.51225 0.92695 1.41863 1.06155 1.07151 1.66207 1.20788 0.90428 0.84123 0.82728 1.90555 1.70976 1.32773 1.56173 1.21698 0.91028 0.81862 1.09027 1.45985 1.59104 1.16632 1.08096 1.22804 0.78921 0.91674 0.85619 1.90879 1.51267 1.70422 1.20840 1.85388 1.76903 1.13281 0.99884 1.22498 1.23045 0.98296 0.97103 1.20486 0.80647 0.87188 0.98822 1.22620 1.18249 0.99271 0.98388 1.21535 0.93380 0.90842 1.01761 1.20433 1.04252 1.00184 0.94067 1.26054 1.05239 1.03262 1.00361 1.83403 1.58359 1.05558 1.06569 1.16395 0.77079 0.87360 0.83270 1.90876 1.50303 1.70276 1.26854 0.90767 0.77016 0.83788 0.83431 0.79240 0.79912 0.80726 0.78882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.96 21.66 0.30 -56.11 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 0.96 39.22 27.74 68.60 1.90 41.12 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.33 -20.24 10.16 84.04 0.85 -19.39 16 8 H 0.05 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.57 -28.50 5.09 -306.99 -1.56 -30.06 16 10 C 0.43 21.28 7.85 87.65 0.69 21.97 16 11 O -0.62 -36.83 16.01 -3.05 -0.05 -36.88 16 12 C 0.09 3.26 5.77 85.63 0.49 3.76 16 13 N -0.56 -19.99 1.97 -784.49 -1.55 -21.54 16 14 C 0.53 18.80 8.45 129.90 1.10 19.90 16 15 O -0.46 -18.28 17.45 -4.22 -0.07 -18.36 16 16 S 0.01 0.21 19.20 -42.73 -0.82 -0.61 16 17 C -0.29 -7.77 6.34 22.71 0.14 -7.63 16 18 C 0.16 2.93 9.71 22.61 0.22 3.14 16 19 C -0.27 -4.04 6.21 22.79 0.14 -3.90 16 20 C -0.04 -0.36 10.26 21.83 0.22 -0.14 16 21 C -0.16 -1.18 10.14 21.08 0.21 -0.96 16 22 C -0.21 -1.90 10.92 66.82 0.73 -1.17 16 23 S 0.19 2.90 19.03 -42.73 -0.81 2.09 16 24 C 0.57 19.27 7.41 85.52 0.63 19.90 16 25 O -0.51 -18.99 16.70 -4.63 -0.08 -19.07 16 26 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.39 16.00 5.76 -92.71 -0.53 15.47 16 28 H 0.14 4.24 7.73 -2.38 -0.02 4.23 16 29 H 0.15 4.37 7.50 -2.39 -0.02 4.35 16 30 H 0.19 2.64 8.05 -2.91 -0.02 2.62 16 31 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 32 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 33 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -87.08 325.50 3.77 -83.30 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.61 Total: 20.68 kcal Atomic # 6 Polarization: 29.52 SS G_CDS: 5.91 Total: 35.43 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -2.81 Total: -107.71 kcal Atomic # 8 Polarization: -74.11 SS G_CDS: -0.20 Total: -74.31 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.12 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.63 Total: 1.48 kcal Total: -87.08 3.77 -83.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608387.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.079 kcal (2) G-P(sol) polarization free energy of solvation -87.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds