Wall clock time and date at job start Tue Mar 31 2020 21:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48500 * 109.47263 * 269.99611 * 3 2 1 5 5 H 1.48496 * 109.46882 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.46656 * 150.00066 * 3 2 1 7 7 C 1.38797 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00284 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00081 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47096 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 N 1.29905 * 124.85613 * 89.71869 * 15 14 13 17 17 C 1.36063 * 108.79922 * 179.89474 * 16 15 14 18 18 C 1.39587 * 133.80470 * 180.09670 * 17 16 15 19 19 C 1.37677 * 119.72911 * 180.28894 * 18 17 16 20 20 N 1.48018 * 119.78898 * 180.02562 * 19 18 17 21 21 O 1.21797 * 120.00100 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00196 * 180.02562 * 20 19 18 23 23 C 1.38720 * 120.42196 * 359.97438 * 19 18 17 24 24 C 1.37906 * 120.47860 * 0.02562 * 23 19 18 25 25 C 1.38673 * 119.87163 * 359.95840 * 24 23 19 26 26 O 1.34235 * 124.85310 * 270.02430 * 15 14 13 27 27 H 0.97000 * 120.00091 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47109 * 60.00175 * 10 9 7 29 29 H 1.09003 * 109.47089 * 299.99618 * 10 9 7 30 30 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 31 31 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 32 32 H 1.07997 * 120.13257 * 0.26984 * 18 17 16 33 33 H 1.08006 * 119.76294 * 180.02562 * 23 19 18 34 34 H 1.08005 * 120.06315 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3411 -2.3000 -0.0014 13 8 6.0437 -4.4897 -0.0011 14 6 7.4864 -4.6534 -0.0016 15 6 7.8254 -6.1218 -0.0013 16 7 7.9869 -6.8467 -1.0671 17 6 8.2852 -8.1197 -0.6905 18 6 8.5559 -9.2963 -1.3910 19 6 8.8233 -10.4564 -0.6996 20 7 9.1110 -11.7047 -1.4412 21 8 9.1102 -11.7034 -2.6592 22 8 9.3476 -12.7334 -0.8335 23 6 8.8258 -10.4627 0.6875 24 6 8.5602 -9.3078 1.3928 25 6 8.2891 -8.1301 0.7126 26 8 7.9978 -6.8690 1.1005 27 1 -0.4850 0.8400 -0.0004 28 1 3.6432 -3.4319 -0.8907 29 1 3.6440 -3.4315 0.8894 30 1 7.9051 -4.1836 -0.8916 31 1 7.9056 -4.1839 0.8883 32 1 8.5552 -9.2965 -2.4710 33 1 9.0374 -11.3788 1.2192 34 1 8.5643 -9.3202 2.4727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751644696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:16 Heat of formation + Delta-G solvation = -56.318907 kcal Electronic energy + Delta-G solvation = -24340.694697 eV Core-core repulsion = 20142.022239 eV Total energy + Delta-G solvation = -4198.672458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.93550 -43.33543 -41.71287 -39.61697 -37.91504 -37.80021 -36.40361 -34.69231 -33.10359 -32.57869 -31.43615 -29.40266 -27.89967 -27.50721 -24.22885 -24.14925 -23.32316 -22.67057 -21.02452 -20.04171 -19.92744 -19.12438 -19.07107 -18.74418 -18.45771 -18.11888 -17.88808 -17.25347 -17.02794 -16.30919 -16.01364 -15.66660 -15.38302 -15.12173 -14.91426 -14.73359 -14.23918 -13.96407 -13.78230 -13.35935 -13.35140 -13.06567 -13.02418 -12.81476 -12.79405 -12.49913 -12.37855 -12.12630 -12.08517 -11.93918 -11.78569 -11.18354 -10.73986 -10.64369 -10.16361 -9.06586 -8.52514 -6.26404 -1.48462 -1.02876 0.00836 0.08666 0.35468 0.86140 0.91906 0.95463 1.33162 1.40509 1.50315 1.76922 1.91089 2.18814 2.23920 2.63352 2.79323 2.85898 3.14310 3.20743 3.45106 3.59361 3.61283 3.90366 3.93785 4.08699 4.13259 4.25598 4.39512 4.45070 4.47149 4.57125 4.78651 4.93028 5.12393 5.69256 5.94767 6.11764 6.34374 6.44676 6.91228 8.59656 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.001771 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.472520 B =15806.684088 C =16076.022428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.230 1.230 7 C -0.534 4.534 8 H 0.065 0.935 9 S -0.154 6.154 10 C -0.093 4.093 11 C 0.503 3.497 12 O -0.502 6.502 13 O -0.350 6.350 14 C 0.153 3.847 15 C 0.267 3.733 16 N -0.462 5.462 17 C -0.004 4.004 18 C 0.014 3.986 19 C -0.049 4.049 20 N 0.032 4.968 21 O -0.192 6.192 22 O -0.138 6.138 23 C -0.026 4.026 24 C -0.063 4.063 25 C 0.053 3.947 26 O -0.194 6.194 27 H 0.278 0.722 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.203 0.797 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.479 -20.408 4.580 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.154 1.154 7 C -0.681 4.681 8 H 0.083 0.917 9 S 0.073 5.927 10 C -0.241 4.241 11 C 0.345 3.655 12 O -0.389 6.389 13 O -0.267 6.267 14 C 0.079 3.921 15 C 0.055 3.945 16 N -0.193 5.193 17 C -0.116 4.116 18 C -0.006 4.006 19 C -0.133 4.133 20 N 0.550 4.450 21 O -0.400 6.400 22 O -0.361 6.361 23 C -0.044 4.044 24 C -0.081 4.081 25 C 0.001 3.999 26 O -0.084 6.084 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.186 0.814 33 H 0.220 0.780 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 22.085 -18.315 4.260 29.006 hybrid contribution -1.072 -0.784 0.004 1.328 sum 21.013 -19.099 4.264 28.714 Atomic orbital electron populations 1.70015 1.07432 1.29160 1.48642 1.25587 0.95285 1.02406 0.92753 0.85868 0.80821 0.79395 0.80299 1.18646 1.18529 1.15394 1.22420 0.89955 0.96885 1.58851 0.91706 1.84598 1.06898 1.03532 1.97701 1.22967 0.90996 1.00864 1.09231 1.22729 0.91083 0.79934 0.71767 1.90708 1.58871 1.44111 1.45185 1.86488 1.24772 1.30673 1.84748 1.21397 0.79106 0.82711 1.08905 1.25871 0.95368 0.95413 0.77843 1.70664 1.17339 1.01793 1.29527 1.19583 1.07482 0.92643 0.91936 1.19992 0.90822 0.87046 1.02712 1.20845 1.14819 0.84395 0.93268 1.43609 0.97551 1.02609 1.01196 1.94604 1.57150 1.92413 0.95821 1.94532 1.50369 1.21269 1.69934 1.21231 0.93028 1.00828 0.89353 1.20321 0.99665 0.84872 1.03280 1.21064 0.99104 0.85724 0.94046 1.84615 1.70131 1.17931 1.35710 0.91287 0.85599 0.85275 0.84474 0.84610 0.81387 0.78019 0.78005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 13.97 21.65 0.30 -53.56 16 2 C 0.05 2.55 5.50 84.86 0.47 3.02 16 3 Si 0.91 42.28 27.74 68.60 1.90 44.19 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.23 -10.36 6.74 99.48 0.67 -9.69 16 7 C -0.53 -29.36 10.04 67.95 0.68 -28.67 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.15 -7.04 18.55 -56.49 -1.05 -8.09 16 10 C -0.09 -3.15 6.27 71.24 0.45 -2.70 16 11 C 0.50 14.93 7.98 71.24 0.57 15.50 16 12 O -0.50 -17.03 15.61 21.97 0.34 -16.69 16 13 O -0.35 -8.33 10.20 -51.42 -0.52 -8.86 16 14 C 0.15 2.65 6.09 71.24 0.43 3.08 16 15 C 0.27 4.93 7.88 88.39 0.70 5.63 16 16 N -0.46 -9.81 11.34 -296.26 -3.36 -13.17 16 17 C 0.00 -0.08 7.24 39.32 0.28 0.21 16 18 C 0.01 0.22 9.59 22.46 0.22 0.43 16 19 C -0.05 -0.66 6.84 36.36 0.25 -0.41 16 20 N 0.03 0.58 4.45 -46.50 -0.21 0.37 16 21 O -0.19 -4.16 18.42 18.89 0.35 -3.81 16 22 O -0.14 -2.46 18.43 18.89 0.35 -2.11 16 23 C -0.03 -0.18 9.53 22.31 0.21 0.04 16 24 C -0.06 -0.39 10.06 22.30 0.22 -0.17 16 25 C 0.05 0.74 7.43 22.88 0.17 0.91 16 26 O -0.19 -3.17 10.77 -10.02 -0.11 -3.28 16 27 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 29 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.14 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.14 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.17 2.55 7.59 -2.91 -0.02 2.52 16 33 H 0.20 0.20 7.59 -2.91 -0.02 0.18 16 34 H 0.20 -0.25 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -71.12 337.02 3.79 -67.32 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.14 Total: 0.83 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.65 Total: -3.14 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -3.26 Total: -66.37 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: 0.41 Total: -34.75 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.90 Total: 44.19 kcal Atomic # 16 Polarization: -7.04 SS G_CDS: -1.05 Total: -8.09 kcal Total: -71.12 3.79 -67.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751644696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.005 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds