Wall clock time and date at job start Tue Mar 31 2020 20:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36926 * 120.00288 * 2 1 4 4 H 1.08001 * 120.00631 * 202.32640 * 3 2 1 5 5 C 1.38812 * 119.99916 * 22.32453 * 3 2 1 6 6 N 1.31617 * 120.00397 * 11.29431 * 5 3 2 7 7 Si 1.86803 * 120.00118 * 191.28794 * 5 3 2 8 8 H 1.48502 * 109.47100 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47036 * 120.00137 * 7 5 3 10 10 H 1.48498 * 109.47371 * 240.00408 * 7 5 3 11 11 C 1.46503 * 119.99562 * 179.97438 * 2 1 3 12 12 N 1.46493 * 109.47349 * 269.99788 * 11 2 1 13 13 C 1.34518 * 124.46234 * 270.04421 * 12 11 2 14 14 O 1.21460 * 125.70218 * 359.97438 * 13 12 11 15 15 C 1.47768 * 108.59714 * 179.97438 * 13 12 11 16 16 C 1.38601 * 134.28554 * 180.30668 * 15 13 12 17 17 C 1.38559 * 119.73722 * 180.17868 * 16 15 13 18 18 C 1.38336 * 120.44887 * 359.45906 * 17 16 15 19 19 Br 1.89097 * 119.78143 * 180.27311 * 18 17 16 20 20 C 1.38744 * 120.43684 * 0.28919 * 18 17 16 21 21 C 1.38525 * 119.70731 * 359.97438 * 20 18 17 22 22 C 1.34529 * 124.45573 * 90.00207 * 12 11 2 23 23 O 1.21445 * 125.71629 * 0.03985 * 22 12 11 24 24 H 1.09007 * 109.47195 * 274.29877 * 1 2 3 25 25 H 1.08997 * 109.46913 * 34.29899 * 1 2 3 26 26 H 1.09002 * 109.47341 * 154.30000 * 1 2 3 27 27 H 0.96994 * 120.00804 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46835 * 149.99833 * 11 2 1 29 29 H 1.09002 * 109.47533 * 30.00433 * 11 2 1 30 30 H 1.08005 * 120.13567 * 359.91160 * 16 15 13 31 31 H 1.07995 * 119.77527 * 179.72382 * 17 16 15 32 32 H 1.07990 * 120.14590 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1690 1.2209 -0.3553 5 6 1.5337 2.3429 0.4566 6 7 0.3833 2.2694 1.0919 7 14 2.3375 4.0046 0.1697 8 1 3.6154 3.8163 -0.5629 9 1 1.4288 4.8619 -0.6332 10 1 2.6069 4.6564 1.4765 11 6 2.1974 -1.2688 0.0006 12 7 2.4416 -1.6911 1.3819 13 6 3.5286 -1.3554 2.0996 14 8 4.4492 -0.6650 1.7109 15 6 3.4156 -1.9668 3.4401 16 6 4.2105 -1.9635 4.5755 17 6 3.8048 -2.6632 5.7006 18 6 2.6071 -3.3553 5.7016 19 35 2.0681 -4.2974 7.2501 20 6 1.7987 -3.3630 4.5740 21 6 2.1949 -2.6721 3.4406 22 6 1.6078 -2.4651 2.0998 23 8 0.5500 -2.9181 1.7115 24 1 -0.3634 0.0770 1.0248 25 1 -0.3633 0.8489 -0.5791 26 1 -0.3634 -0.9260 -0.4457 27 1 -0.0473 3.0779 1.4107 28 1 3.1498 -1.1387 -0.5134 29 1 1.6083 -2.0287 -0.5130 30 1 5.1446 -1.4213 4.5818 31 1 4.4259 -2.6647 6.5840 32 1 0.8648 -3.9052 4.5799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766071221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:39 Heat of formation + Delta-G solvation = 17.744572 kcal Electronic energy + Delta-G solvation = -21059.898670 eV Core-core repulsion = 17647.966453 eV Total energy + Delta-G solvation = -3411.932217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.79383 -38.48594 -38.03475 -35.81931 -34.90526 -32.61144 -31.65678 -30.89391 -29.63685 -26.50896 -25.90626 -24.67630 -23.29853 -21.73767 -21.33108 -19.55452 -17.49409 -16.98164 -16.81731 -16.14698 -16.01890 -15.04605 -14.94767 -14.55751 -14.15941 -14.07998 -13.69699 -13.42492 -13.40525 -13.12426 -12.50303 -12.21453 -11.79969 -11.47733 -11.12072 -11.01692 -10.83389 -10.67260 -10.59761 -10.23493 -10.11560 -10.09244 -9.79786 -9.39486 -9.21275 -8.98725 -8.74576 -7.17251 -5.92706 -3.42734 0.09183 0.79353 1.22385 2.11015 2.93754 3.32826 3.37919 3.41403 3.48968 3.55046 3.84799 4.37498 4.49899 4.57129 4.78496 4.98773 5.05923 5.30600 5.38057 5.54872 5.71661 5.73201 5.80832 5.90379 6.04319 6.29575 6.40637 6.68747 7.24250 7.33007 7.60440 7.70602 7.73823 8.15001 8.26614 9.00548 9.58367 10.04405 11.10487 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.003439 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.163295 B = 8141.126382 C = 8407.072195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.569 5.569 3 C -0.269 4.269 4 H 0.080 0.920 5 C 0.012 3.988 6 N -0.898 5.898 7 Si 0.912 3.088 8 H -0.274 1.274 9 H -0.286 1.286 10 H -0.288 1.288 11 C 0.336 3.664 12 N -0.572 5.572 13 C 0.571 3.429 14 O -0.457 6.457 15 C -0.116 4.116 16 C -0.049 4.049 17 C -0.073 4.073 18 C -0.082 4.082 19 Br -0.038 7.038 20 C -0.026 4.026 21 C -0.130 4.130 22 C 0.573 3.427 23 O -0.472 6.472 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.008 0.992 27 H 0.257 0.743 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -14.217 11.934 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.288 5.288 3 C -0.399 4.399 4 H 0.098 0.902 5 C -0.189 4.189 6 N -0.541 5.541 7 Si 0.741 3.259 8 H -0.198 1.198 9 H -0.213 1.213 10 H -0.214 1.214 11 C 0.130 3.870 12 N -0.321 5.321 13 C 0.357 3.643 14 O -0.328 6.328 15 C -0.121 4.121 16 C -0.069 4.069 17 C -0.093 4.093 18 C -0.162 4.162 19 Br 0.048 6.952 20 C -0.047 4.047 21 C -0.135 4.135 22 C 0.360 3.640 23 O -0.345 6.345 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.678 -14.190 11.941 19.126 hybrid contribution 0.350 1.261 -0.056 1.310 sum 5.028 -12.930 11.885 18.268 Atomic orbital electron populations 1.20977 0.81382 0.96518 1.00020 1.44894 1.03051 1.01211 1.79602 1.19432 0.98595 0.84600 1.37244 0.90197 1.25172 0.97283 0.99180 0.97218 1.70102 1.17475 1.27696 1.38811 0.86075 0.78908 0.83285 0.77668 1.19825 1.21293 1.21440 1.21942 0.97574 0.88116 0.79387 1.49759 1.19368 1.45107 1.17845 1.18426 0.82333 0.79122 0.84384 1.90759 1.33807 1.33049 1.75197 1.21245 0.95904 0.98672 0.96246 1.20767 0.99545 0.96630 0.89913 1.21311 0.94489 0.94764 0.98778 1.21903 0.98121 1.02562 0.93582 1.96755 1.91214 1.73923 1.33328 1.20613 0.98935 0.95980 0.89166 1.20984 0.96632 0.99922 0.95988 1.18461 0.83664 0.77475 0.84358 1.90738 1.19838 1.48521 1.75400 0.94847 0.92834 0.97313 0.93326 0.89478 0.90110 0.83365 0.83580 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 9.01 59.85 0.54 4.39 16 2 N -0.57 -14.21 3.16 -184.86 -0.59 -14.80 16 3 C -0.27 -7.32 9.67 -15.06 -0.15 -7.47 16 4 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 5 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 6 N -0.90 -25.86 10.58 55.49 0.59 -25.28 16 7 Si 0.91 21.81 29.57 -169.99 -5.03 16.78 16 8 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.34 6.99 6.31 -63.76 -0.40 6.59 16 12 N -0.57 -11.51 2.86 -121.12 -0.35 -11.86 16 13 C 0.57 11.19 8.02 -12.48 -0.10 11.09 16 14 O -0.46 -9.99 17.68 5.40 0.10 -9.90 16 15 C -0.12 -1.85 6.40 -104.83 -0.67 -2.52 16 16 C -0.05 -0.59 10.09 -39.33 -0.40 -0.99 16 17 C -0.07 -0.75 9.76 -39.43 -0.39 -1.13 16 18 C -0.08 -0.92 6.23 -39.36 -0.25 -1.16 16 19 Br -0.04 -0.36 33.68 -68.01 -2.29 -2.65 16 20 C -0.03 -0.34 9.83 -39.29 -0.39 -0.73 16 21 C -0.13 -2.08 6.40 -104.83 -0.67 -2.75 16 22 C 0.57 10.98 8.02 -12.45 -0.10 10.88 16 23 O -0.47 -9.81 17.68 5.41 0.10 -9.72 16 24 H 0.03 0.91 7.41 -51.92 -0.39 0.53 16 25 H 0.05 1.40 7.19 -51.93 -0.37 1.02 16 26 H 0.01 0.19 7.84 -51.93 -0.41 -0.22 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.09 1.73 7.86 -51.93 -0.41 1.32 16 29 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 30 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -31.30 309.74 -8.64 -39.95 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -2.79 Total: -3.63 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -3.05 Total: 16.43 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.34 Total: -51.93 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.19 Total: -19.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.30 -8.64 -39.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766071221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.692 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds