Wall clock time and date at job start Tue Mar 31 2020 20:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36926 * 120.00288 * 2 1 4 4 H 1.08001 * 120.00631 * 202.32640 * 3 2 1 5 5 C 1.38812 * 119.99916 * 22.32453 * 3 2 1 6 6 N 1.31617 * 120.00397 * 11.29431 * 5 3 2 7 7 Si 1.86803 * 120.00118 * 191.28794 * 5 3 2 8 8 H 1.48502 * 109.47100 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47036 * 120.00137 * 7 5 3 10 10 H 1.48498 * 109.47371 * 240.00408 * 7 5 3 11 11 C 1.46503 * 119.99562 * 179.97438 * 2 1 3 12 12 N 1.46493 * 109.47349 * 269.99788 * 11 2 1 13 13 C 1.34518 * 124.46234 * 270.04421 * 12 11 2 14 14 O 1.21460 * 125.70218 * 359.97438 * 13 12 11 15 15 C 1.47768 * 108.59714 * 179.97438 * 13 12 11 16 16 C 1.38601 * 134.28554 * 180.30668 * 15 13 12 17 17 C 1.38559 * 119.73722 * 180.17868 * 16 15 13 18 18 C 1.38336 * 120.44887 * 359.45906 * 17 16 15 19 19 Br 1.89097 * 119.78143 * 180.27311 * 18 17 16 20 20 C 1.38744 * 120.43684 * 0.28919 * 18 17 16 21 21 C 1.38525 * 119.70731 * 359.97438 * 20 18 17 22 22 C 1.34529 * 124.45573 * 90.00207 * 12 11 2 23 23 O 1.21445 * 125.71629 * 0.03985 * 22 12 11 24 24 H 1.09007 * 109.47195 * 274.29877 * 1 2 3 25 25 H 1.08997 * 109.46913 * 34.29899 * 1 2 3 26 26 H 1.09002 * 109.47341 * 154.30000 * 1 2 3 27 27 H 0.96994 * 120.00804 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46835 * 149.99833 * 11 2 1 29 29 H 1.09002 * 109.47533 * 30.00433 * 11 2 1 30 30 H 1.08005 * 120.13567 * 359.91160 * 16 15 13 31 31 H 1.07995 * 119.77527 * 179.72382 * 17 16 15 32 32 H 1.07990 * 120.14590 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1690 1.2209 -0.3553 5 6 1.5337 2.3429 0.4566 6 7 0.3833 2.2694 1.0919 7 14 2.3375 4.0046 0.1697 8 1 3.6154 3.8163 -0.5629 9 1 1.4288 4.8619 -0.6332 10 1 2.6069 4.6564 1.4765 11 6 2.1974 -1.2688 0.0006 12 7 2.4416 -1.6911 1.3819 13 6 3.5286 -1.3554 2.0996 14 8 4.4492 -0.6650 1.7109 15 6 3.4156 -1.9668 3.4401 16 6 4.2105 -1.9635 4.5755 17 6 3.8048 -2.6632 5.7006 18 6 2.6071 -3.3553 5.7016 19 35 2.0681 -4.2974 7.2501 20 6 1.7987 -3.3630 4.5740 21 6 2.1949 -2.6721 3.4406 22 6 1.6078 -2.4651 2.0998 23 8 0.5500 -2.9181 1.7115 24 1 -0.3634 0.0770 1.0248 25 1 -0.3633 0.8489 -0.5791 26 1 -0.3634 -0.9260 -0.4457 27 1 -0.0473 3.0779 1.4107 28 1 3.1498 -1.1387 -0.5134 29 1 1.6083 -2.0287 -0.5130 30 1 5.1446 -1.4213 4.5818 31 1 4.4259 -2.6647 6.5840 32 1 0.8648 -3.9052 4.5799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766071221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:39 Heat of formation + Delta-G solvation = -1.063586 kcal Electronic energy + Delta-G solvation = -21060.714253 eV Core-core repulsion = 17647.966453 eV Total energy + Delta-G solvation = -3412.747800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21974 -39.67402 -39.61110 -37.64443 -36.52328 -33.97235 -33.04820 -32.29141 -30.78227 -28.26357 -27.78653 -26.05483 -24.71509 -23.03433 -23.03166 -20.96867 -19.09469 -18.57409 -18.39609 -17.71036 -17.37609 -16.65154 -16.34309 -15.97912 -15.52349 -15.47350 -15.27256 -15.18939 -15.01129 -14.28746 -14.17410 -13.48803 -13.36298 -12.97090 -12.90381 -12.71926 -12.51161 -12.19455 -12.04886 -12.00063 -11.74071 -11.43128 -11.30382 -10.92851 -10.79217 -10.39368 -10.01929 -9.19795 -7.99173 -5.53623 -1.12330 -0.24395 0.32191 0.85422 1.36095 1.42222 1.52309 1.54183 2.00237 2.36135 2.42353 2.62152 3.18292 3.26243 3.46504 3.50684 3.81050 3.95602 4.04715 4.17575 4.37396 4.58560 4.62577 4.70051 4.77103 4.79389 4.90343 5.18732 5.32344 5.50737 5.58105 5.77875 6.13430 6.22750 6.70183 6.95422 7.58508 8.02014 9.03540 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.003439 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.163295 B = 8141.126382 C = 8407.072195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.591 5.591 3 C -0.273 4.273 4 H 0.075 0.925 5 C -0.040 4.040 6 N -0.932 5.932 7 Si 0.972 3.028 8 H -0.266 1.266 9 H -0.283 1.283 10 H -0.291 1.291 11 C 0.341 3.659 12 N -0.585 5.585 13 C 0.567 3.433 14 O -0.490 6.490 15 C -0.136 4.136 16 C -0.036 4.036 17 C -0.050 4.050 18 C -0.079 4.079 19 Br -0.011 7.011 20 C -0.021 4.021 21 C -0.148 4.148 22 C 0.570 3.430 23 O -0.497 6.497 24 H 0.000 1.000 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.253 0.747 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -15.392 14.298 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.312 5.312 3 C -0.403 4.403 4 H 0.092 0.908 5 C -0.237 4.237 6 N -0.576 5.576 7 Si 0.799 3.201 8 H -0.190 1.190 9 H -0.209 1.209 10 H -0.218 1.218 11 C 0.135 3.865 12 N -0.331 5.331 13 C 0.356 3.644 14 O -0.363 6.363 15 C -0.140 4.140 16 C -0.055 4.055 17 C -0.069 4.069 18 C -0.159 4.159 19 Br 0.075 6.925 20 C -0.042 4.042 21 C -0.153 4.153 22 C 0.360 3.640 23 O -0.371 6.371 24 H 0.018 0.982 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.190 0.810 31 H 0.206 0.794 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.145 -15.421 14.330 21.930 hybrid contribution -0.041 1.396 -0.637 1.535 sum 6.104 -14.025 13.693 20.529 Atomic orbital electron populations 1.20621 0.81765 0.96650 0.97678 1.44918 1.02971 1.01932 1.81423 1.19568 0.98327 0.85827 1.36589 0.90762 1.25888 0.97996 1.02252 0.97538 1.70253 1.18874 1.28025 1.40482 0.85142 0.78280 0.79403 0.77255 1.19032 1.20913 1.21769 1.21808 0.97907 0.87306 0.79494 1.49057 1.20359 1.45772 1.17949 1.18865 0.81375 0.78365 0.85828 1.90730 1.34772 1.34630 1.76194 1.20979 0.97278 1.00181 0.95593 1.21127 0.99599 0.95997 0.88825 1.21781 0.93967 0.92117 0.99079 1.22127 0.97976 1.02045 0.93715 1.96814 1.91144 1.73276 1.31303 1.20777 0.99565 0.95109 0.88706 1.20632 0.96918 1.02464 0.95252 1.18810 0.83001 0.76576 0.85647 1.90712 1.20692 1.49485 1.76240 0.98196 0.94945 0.94961 0.93802 0.88925 0.88222 0.81035 0.79401 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 9.01 127.77 1.15 10.27 16 2 N -0.59 -30.34 3.16 -738.77 -2.34 -32.67 16 3 C -0.27 -15.23 9.67 84.04 0.81 -14.42 16 4 H 0.07 4.13 7.84 -2.91 -0.02 4.11 16 5 C -0.04 -2.28 5.13 84.86 0.44 -1.85 16 6 N -0.93 -55.39 10.58 21.65 0.23 -55.16 16 7 Si 0.97 45.64 29.57 68.60 2.03 47.67 16 8 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 C 0.34 14.46 6.31 170.96 1.08 15.54 16 12 N -0.58 -23.96 2.86 -774.03 -2.22 -26.18 16 13 C 0.57 22.42 8.02 86.80 0.70 23.11 16 14 O -0.49 -21.72 17.68 -3.59 -0.06 -21.79 16 15 C -0.14 -4.17 6.40 -20.00 -0.13 -4.30 16 16 C -0.04 -0.76 10.09 22.43 0.23 -0.53 16 17 C -0.05 -0.79 9.76 22.37 0.22 -0.57 16 18 C -0.08 -1.46 6.23 22.41 0.14 -1.33 16 19 Br -0.01 -0.17 33.68 -20.37 -0.69 -0.86 16 20 C -0.02 -0.50 9.83 22.46 0.22 -0.28 16 21 C -0.15 -4.60 6.40 -20.00 -0.13 -4.73 16 22 C 0.57 22.10 8.02 86.82 0.70 22.80 16 23 O -0.50 -20.97 17.68 -3.54 -0.06 -21.04 16 24 H 0.00 -0.02 7.41 -2.38 -0.02 -0.04 16 25 H 0.03 1.75 7.19 -2.39 -0.02 1.73 16 26 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 27 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.09 3.76 7.86 -2.38 -0.02 3.75 16 29 H 0.10 3.77 7.69 -2.39 -0.02 3.76 16 30 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 3.37 8.06 -2.92 -0.02 3.35 16 Total: -1.00 -70.24 309.74 3.48 -66.77 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: 1.17 Total: -0.47 kcal Atomic # 6 Polarization: 38.30 SS G_CDS: 5.42 Total: 43.72 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.32 Total: -114.01 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.13 Total: -42.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -70.24 3.48 -66.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766071221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.702 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds